Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1100G039 Amborella trichopoda HOM05D006919 ORTHO05D008705 9.9e-178 626.7 324 100.0
TAR629G0573 Trochodendron aralioides HOM05D006919 ORTHO05D008705 7.2e-128 461.1 317 72.2
Nn4g24311 Nelumbo nucifera HOM05D006919 ORTHO05D008705 2.0e-122 443.0 317 67.8
Gorai.001G068200 Gossypium raimondii HOM05D006919 ORTHO05D008705 2.5e-120 436.0 315 66.3
Dinv08205 Davidia involucrata HOM05D006919 ORTHO05D008705 4.2e-120 435.3 317 69.1
Gohir.D07G064700 Gossypium hirsutum HOM05D006919 ORTHO05D008705 5.5e-120 434.9 315 66.3
Gohir.A07G060000 Gossypium hirsutum HOM05D006919 ORTHO05D008705 1.2e-119 433.7 315 65.7
CANSAT80G0223 Cannabis sativa HOM05D006919 ORTHO05D008705 3.6e-119 432.2 317 66.9
GSVIVG01008449001 Vitis vinifera HOM05D006919 ORTHO05D008705 1.8e-118 429.9 317 66.9
Actinidia18895 Actinidia chinensis HOM05D006919 ORTHO05D008705 2.3e-118 429.5 317 66.9
Thecc.03G055400 Theobroma cacao HOM05D006919 ORTHO05D008705 3.0e-118 429.1 314 66.6
Duzib205G1348 Durio zibethinus HOM05D006919 ORTHO05D008705 3.9e-118 428.7 316 66.1
Potri.015G037600 Populus trichocarpa HOM05D006919 ORTHO05D008705 5.2e-118 428.3 315 67.3
Aqoxy3G04092 Aquilegia oxysepala HOM05D006919 ORTHO05D008705 2.0e-117 426.4 316 67.1
Lalb_Chr24g0398171 Lupinus albus HOM05D006919 ORTHO05D008705 3.3e-117 425.6 318 66.7
CSS0007871 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 4.4e-117 425.2 319 67.4
Prupe.5G234100 Prunus persica HOM05D006919 ORTHO05D008705 7.4e-117 424.5 317 67.5
QL10p029823 Quercus lobata HOM05D006919 ORTHO05D008705 1.7e-116 423.3 317 66.6
COL.COLO4_04912 Corchorus olitorius HOM05D006919 ORTHO05D008705 2.2e-116 422.9 315 65.1
Glyma.07G102800 Glycine max HOM05D006919 ORTHO05D008705 2.2e-116 422.9 321 67.9
PGR083G2730 Punica granatum HOM05D006919 ORTHO05D008705 2.8e-116 422.5 316 64.9
arahy.Tifrunner.gnm1.ann1.CTKR59 Arachis hypogaea HOM05D006919 ORTHO05D008705 4.8e-116 421.8 317 65.3
Phvul.004G150300 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 6.3e-116 421.4 318 67.0
Atru.chr9.1714 Acer truncatum HOM05D006919 ORTHO05D008705 8.2e-116 421.0 316 64.9
TWI81G0447 Tripterygium wilfordii HOM05D006919 ORTHO05D008705 1.1e-115 420.6 317 65.9
Phvul.004G149400 Phaseolus vulgaris HOM05D006919 ORTHO05D008705 1.4e-115 420.2 318 67.0
TPR.G8644 Trifolium pratense HOM05D006919 ORTHO05D008705 1.4e-115 420.2 317 67.2
MD06G1227700 Malus domestica HOM05D006919 ORTHO05D008705 3.1e-115 419.1 317 65.3
Sp1g35490 Schrenkiella parvula HOM05D006919 ORTHO05D008705 5.3e-115 418.3 319 64.9
BcaB07g33748 Brassica carinata HOM05D006919 ORTHO05D008705 7.0e-115 417.9 319 64.6
CiPaw.15G143800 Carya illinoinensis HOM05D006919 ORTHO05D008705 1.2e-114 417.2 317 65.0
Psat1g030800 Pisum sativum HOM05D006919 ORTHO05D008705 1.6e-114 416.8 316 66.1
CAN.G843.52 Capsicum annuum HOM05D006919 ORTHO05D008705 2.6e-114 416.0 317 64.7
C06p03070 Brassica napus HOM05D006919 ORTHO05D008705 3.5e-114 415.6 319 63.9
BolC6t35427H Brassica oleracea HOM05D006919 ORTHO05D008705 3.5e-114 415.6 319 63.9
Carub.0001s3766 Capsella rubella HOM05D006919 ORTHO05D008705 4.5e-114 415.2 319 64.3
A06p04410 Brassica napus HOM05D006919 ORTHO05D008705 7.7e-114 414.5 317 64.4
Thhalv10012210m.g Eutrema salsugineum HOM05D006919 ORTHO05D008705 7.7e-114 414.5 319 64.6
Medtr6g069620 Medicago truncatula HOM05D006919 ORTHO05D008705 7.7e-114 414.5 317 66.6
Sopen03g037620 Solanum pennellii HOM05D006919 ORTHO05D008705 1.3e-113 413.7 317 65.0
AL1G55190 Arabidopsis lyrata HOM05D006919 ORTHO05D008705 1.7e-113 413.3 319 64.6
BraA06t23646Z Brassica rapa HOM05D006919 ORTHO05D008705 2.2e-113 412.9 321 64.2
THA.LOC104820349 Tarenaya hassleriana HOM05D006919 ORTHO05D008705 2.2e-113 412.9 317 65.6
AT1G48550 Arabidopsis thaliana HOM05D006919 ORTHO05D008705 2.9e-113 412.5 319 64.3
Aa31LG10G5250 Aethionema arabicum HOM05D006919 ORTHO05D008705 5.0e-113 411.8 318 64.5
RcHm_v2.0_Chr7g0178261 Rosa chinensis HOM05D006919 ORTHO05D008705 5.0e-113 411.8 317 64.4
PSO063G3076 Papaver somniferum HOM05D006919 ORTHO05D008705 1.5e-112 410.2 317 65.9
BcaC08g43045 Brassica carinata HOM05D006919 ORTHO05D008705 7.2e-112 407.9 325 62.5
Atru.chr9.1680 Acer truncatum HOM05D006919 ORTHO05D008705 9.4e-112 407.5 323 62.8
AUR62020416 Chenopodium quinoa HOM05D006919 ORTHO05D008705 9.4e-112 407.5 315 62.5
PGSC0003DMG402005674 Solanum tuberosum HOM05D006919 ORTHO05D008705 1.2e-111 407.1 317 64.0
CsaV3_1G007200 Cucumis sativus L. HOM05D006919 ORTHO05D008705 2.1e-111 406.4 315 63.8
FvH4_5g17430 Fragaria vesca HOM05D006919 ORTHO05D008705 4.7e-111 405.2 318 64.2
MSTRG.9306 Avicennia marina HOM05D006919 ORTHO05D008705 2.6e-109 399.4 316 63.0
arahy.Tifrunner.gnm1.ann1.95HZXM Arachis hypogaea HOM05D006919 ORTHO05D008705 5.7e-109 398.3 360 57.8
Lj2g0027212 Lotus japonicus HOM05D006919 ORTHO05D008705 7.5e-109 397.9 307 65.8
PSO754G0044 Papaver somniferum HOM05D006919 ORTHO05D008705 2.2e-108 396.4 317 62.5
Migut.D01529 Erythranthe guttata HOM05D006919 ORTHO05D008705 1.1e-107 394.0 317 61.2
Solyc03g118660.3 Solanum lycopersicum HOM05D006919 ORTHO05D008705 1.4e-107 393.7 304 64.1
FAN13G2797 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.8e-107 393.3 305 64.6
Hund01978 Selenicereus undatus HOM05D006919 ORTHO05D008705 1.8e-107 393.3 309 62.1
Migut.D01538 Erythranthe guttata HOM05D006919 ORTHO05D008705 2.4e-107 392.9 317 61.5
Cc04_g06200 Coffea canephora HOM05D006919 ORTHO05D008705 5.3e-107 391.7 324 59.0
VMungo0464G0753 Vigna mungo HOM05D006919 ORTHO05D008705 1.6e-106 390.2 318 63.5
FAN08G0969 Fragaria x ananassa HOM05D006919 ORTHO05D008705 4.5e-106 388.7 305 63.9
Sed0003421 Sechium edule HOM05D006919 ORTHO05D008705 1.7e-105 386.7 304 64.5
CSS0013537 Camellia sinensis var. sinensis HOM05D006919 ORTHO05D008705 8.5e-105 384.4 319 63.6
AUR62015799 Chenopodium quinoa HOM05D006919 ORTHO05D008705 1.1e-104 384.0 296 62.8
Oeu026273.1 Olea europaea HOM05D006919 ORTHO05D008705 2.5e-104 382.9 303 62.4
FAN04G0116 Fragaria x ananassa HOM05D006919 ORTHO05D008705 4.2e-104 382.1 306 63.4
Ciclev10010588m.g Citrus clementina HOM05D006919 ORTHO05D008705 4.7e-103 378.6 312 61.5
HanXRQChr05g0142681 Helianthus annuus HOM05D006919 ORTHO05D008705 4.7e-103 378.6 317 58.4
arahy.Tifrunner.gnm1.ann1.2R737Y Arachis hypogaea HOM05D006919 ORTHO05D008705 8.8e-102 374.4 317 60.6
HPP92_023812 Vanilla planifolia HOM05D006919 ORTHO05D008705 8.8e-102 374.4 316 61.4
Cpa.g.sc3.392 Carica papaya HOM05D006919 ORTHO05D008705 2.0e-101 373.2 337 59.1
Lsat_1_v5_gn_8_720 Lactuca sativa HOM05D006919 ORTHO05D008705 2.0e-101 373.2 317 59.9
ECA233G0189 Erigeron canadensis HOM05D006919 ORTHO05D008705 2.6e-101 372.9 314 58.6
Manes.06G005400 Manihot esculenta HOM05D006919 ORTHO05D008705 1.3e-100 370.5 269 68.4
arahy.Tifrunner.gnm1.ann1.54PB3V Arachis hypogaea HOM05D006919 ORTHO05D008705 1.3e-97 360.5 338 56.8
EL10Ac4g07782 Beta vulgaris HOM05D006919 ORTHO05D008705 1.8e-94 350.1 317 57.4
QL10p030230 Quercus lobata HOM05D006919 ORTHO05D008705 3.0e-94 349.4 298 60.4
Nitab4.5_0013135g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 5.2e-94 348.6 284 62.7
FAN18G1663 Fragaria x ananassa HOM05D006919 ORTHO05D008705 1.2e-93 347.4 305 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2286 Anthoceros agrestis HOM05D006919 ORTHO05D008705 3.9e-89 332.4 317 52.4
ClCG04G010590 Citrullus lanatus HOM05D006919 ORTHO05D008705 3.1e-86 322.8 320 54.1
Peaxi162Scf00314g00331 Petunia axillaris HOM05D006919 ORTHO05D008705 4.0e-86 322.4 247 64.0
MELO3C002137.2 Cucumis melo HOM05D006919 ORTHO05D008705 2.9e-84 316.2 255 63.5
Mapoly0012s0164 Marchantia polymorpha HOM05D006919 ORTHO05D008705 2.9e-84 316.2 322 50.3
Eucgr.B00878 Eucalyptus grandis HOM05D006919 ORTHO05D008705 4.9e-84 315.5 229 67.2
Ca_25336_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 1.1e-83 314.3 271 62.4
Ca_29640_v3 Cicer arietinum L. HOM05D002609 ORTHO05D008705 1.1e-83 314.3 271 62.4
CDE08G0345 Ceratophyllum demersum HOM05D006919 ORTHO05D008705 1.9e-80 303.5 317 49.5
MBI09_g15241_MAGBIO Magnolia biondii HOM05D006919 ORTHO05D008705 8.0e-79 298.1 216 69.0
Pp3c1_6570 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.2e-77 294.3 315 47.3
Pp3c2_29770 Physcomitrium patens HOM05D006919 ORTHO05D008705 1.3e-76 290.8 315 45.7
vmacro16410 Vaccinium macrocarpon HOM05D006919 ORTHO05D008705 2.1e-74 283.5 256 58.2
Nitab4.5_0012026g0010 Nicotiana tabacum HOM05D006919 ORTHO05D008705 2.8e-71 273.1 226 59.7
AagrBONN_evm.TU.Sc2ySwM_228.5103 Anthoceros agrestis HOM05D006919 ORTHO05D008705 2.3e-70 270.0 305 44.9
CARHR038160 Cardamine hirsuta HOM05D006919 ORTHO05D008705 3.1e-70 269.6 198 65.7
Glyma.U031615 Glycine max HOM05D006919 ORTHO05D008705 4.4e-69 265.8 180 73.3
Eucgr.B00996 Eucalyptus grandis HOM05D006919 ORTHO05D008705 2.5e-64 250.0 229 56.8
SMO143G0218 Selaginella moellendorffii HOM05D006919 ORTHO05D008705 2.5e-64 250.0 268 48.9
CBR_g44935 Chara braunii HOM05D006919 ORTHO05D008705 5.1e-57 225.7 345 39.7
Haze_18872 Corylus avellana HOM05D006919 ORTHO05D008705 6.6e-57 225.3 331 43.8
Cfa019651 Carpinus fangiana HOM05D006919 ORTHO05D008705 2.2e-44 183.7 146 62.3
Rhsim12G0138200 Rhododendron simsii HOM05D006919 ORTHO05D008705 5.8e-37 159.1 228 40.8
RcHm_v2.0_Chr5g0035741 Rosa chinensis HOM05D006919 ORTHO05D008705 1.1e-35 154.8 144 56.9
RcHm_v2.0_Chr7g0224581 Rosa chinensis HOM05D006919 ORTHO05D008705 4.6e-34 149.4 129 57.4
arahy.Tifrunner.gnm1.ann1.248BIT Arachis hypogaea HOM05D006919 ORTHO05D008705 9.0e-30 135.2 103 64.1
SEGI_02358 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 1.3e-23 114.8 93 60.2
Lj9A419G30 Lonicera japonica HOM05D006919 ORTHO05D008705 9.0e-22 108.6 246 29.7
RcHm_v2.0_Chr7g0212051 Rosa chinensis HOM05D006919 ORTHO05D008705 5.9e-21 105.9 88 62.5
CBR_g74660 Chara braunii HOM05D006919 ORTHO05D008705 2.5e-19 100.5 211 32.2
Lj9C419T19 Lonicera japonica HOM05D006919 ORTHO05D008705 2.3e-17 94.0 70 65.7
SEGI_39350 Sequoiadendron giganteum HOM05D006919 ORTHO05D008705 5.5e-11 72.8 72 51.4


User provided reference genes

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