Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1100G030 Amborella trichopoda HOM05D005463 ORTHO05D006900 2.1e-177 625.5 310 100.0
ATR0709G016 Amborella trichopoda HOM05D005463 ORTHO05D006900 1.4e-136 490.0 339 77.9
QL04p003263 Quercus lobata HOM05D005463 ORTHO05D006900 1.6e-100 370.2 291 67.0
TAR623G0821 Trochodendron aralioides HOM05D005463 ORTHO05D006900 1.6e-100 370.2 295 65.8
Dinv43914 Davidia involucrata HOM05D005463 ORTHO05D006900 3.6e-100 369.0 308 62.7
Nitab4.5_0006866g0010 Nicotiana tabacum HOM05D005463 ORTHO05D006900 1.0e-99 367.5 298 63.8
CAN.G1393.12 Capsicum annuum HOM05D005463 ORTHO05D006900 1.3e-99 367.1 291 65.3
Solyc01g086650.3 Solanum lycopersicum HOM05D005463 ORTHO05D006900 1.8e-99 366.7 292 64.7
Sopen01g033670 Solanum pennellii HOM05D005463 ORTHO05D006900 1.8e-99 366.7 292 64.7
PGSC0003DMG400025254 Solanum tuberosum HOM05D005463 ORTHO05D006900 3.9e-99 365.5 298 63.4
RcHm_v2.0_Chr6g0277781 Rosa chinensis HOM05D005463 ORTHO05D006900 5.1e-99 365.2 323 61.0
Lsat_1_v5_gn_4_46300 Lactuca sativa HOM05D005463 ORTHO05D006900 8.7e-99 364.4 285 65.6
RcHm_v2.0_Chr1g0314251 Rosa chinensis HOM05D005463 ORTHO05D006900 8.7e-99 364.4 328 60.4
FAN06G3192 Fragaria x ananassa HOM05D005463 ORTHO05D006900 2.5e-98 362.8 327 60.2
TAR369G0415 Trochodendron aralioides HOM05D005463 ORTHO05D006900 2.5e-98 362.8 312 62.8
Nitab4.5_0002239g0050 Nicotiana tabacum HOM05D005463 ORTHO05D006900 4.3e-98 362.1 299 63.5
TPR.G12169 Trifolium pratense HOM05D005463 ORTHO05D006900 4.3e-98 362.1 299 64.2
Psat5g207280 Pisum sativum HOM05D005463 ORTHO05D006900 5.7e-98 361.7 292 65.4
CSS0041052 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.7e-97 360.1 306 62.4
Ciclev10031826m.g Citrus clementina HOM05D005463 ORTHO05D006900 1.7e-97 360.1 295 63.4
Lj7A567T29 Lonicera japonica HOM05D005463 ORTHO05D006900 2.2e-97 359.8 290 64.5
Manes.10G148700 Manihot esculenta HOM05D005463 ORTHO05D006900 4.8e-97 358.6 348 56.9
Migut.B01346 Erythranthe guttata HOM05D005463 ORTHO05D006900 6.3e-97 358.2 294 62.9
Haze_03251 Corylus avellana HOM05D005463 ORTHO05D006900 8.2e-97 357.8 292 64.0
PSO541G2837 Papaver somniferum HOM05D005463 ORTHO05D006900 1.1e-96 357.5 332 60.5
CiPaw.13G001800 Carya illinoinensis HOM05D005463 ORTHO05D006900 1.4e-96 357.1 314 61.1
CSS0012415 Camellia sinensis var. sinensis HOM05D005463 ORTHO05D006900 1.8e-96 356.7 299 62.9
ClCG09G003850 Citrullus lanatus HOM05D005463 ORTHO05D006900 1.8e-96 356.7 295 63.1
Prupe.2G005900 Prunus persica HOM05D005463 ORTHO05D006900 1.8e-96 356.7 337 58.8
SGA_v2.0_scaffold4G02241 Striga asiatica HOM05D005463 ORTHO05D006900 1.8e-96 356.7 288 65.3
THA.LOC104819056 Tarenaya hassleriana HOM05D005463 ORTHO05D006900 2.4e-96 356.3 317 60.9
TWI77G0271 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 3.1e-96 355.9 317 60.9
Cc02_g27320 Coffea canephora HOM05D005463 ORTHO05D006900 4.1e-96 355.5 313 60.7
DCAR_006305 Daucus carota HOM05D005463 ORTHO05D006900 4.1e-96 355.5 293 64.2
Thecc.01G415300 Theobroma cacao HOM05D005463 ORTHO05D006900 4.1e-96 355.5 306 61.8
Cfa010722 Carpinus fangiana HOM05D005463 ORTHO05D006900 5.3e-96 355.1 292 63.7
Lalb_Chr25g0283441 Lupinus albus HOM05D005463 ORTHO05D006900 6.9e-96 354.8 313 60.7
MBI19_g42082_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 6.9e-96 354.8 294 64.6
Ca_22203_v3 Cicer arietinum L. HOM05D005463 ORTHO05D006900 9.1e-96 354.4 283 65.0
MELO3C023520.2 Cucumis melo HOM05D005463 ORTHO05D006900 9.1e-96 354.4 309 60.5
FAN03G0244 Fragaria x ananassa HOM05D005463 ORTHO05D006900 9.1e-96 354.4 323 59.8
Eucgr.H00541 Eucalyptus grandis HOM05D005463 ORTHO05D006900 1.2e-95 354.0 311 60.5
MBI07_g21780_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 1.2e-95 354.0 330 59.7
SalBow4G1191 Salvia bowleyana HOM05D005463 ORTHO05D006900 1.2e-95 354.0 287 63.8
Medtr7g034345 Medicago truncatula HOM05D005463 ORTHO05D006900 1.5e-95 353.6 298 64.1
A04p13900 Brassica napus HOM05D005463 ORTHO05D006900 2.0e-95 353.2 327 60.9
BraA04t17055Z Brassica rapa HOM05D005463 ORTHO05D006900 2.0e-95 353.2 327 60.9
FvH4_7g00480 Fragaria vesca HOM05D005463 ORTHO05D006900 2.0e-95 353.2 322 59.6
PGR083G1038 Punica granatum HOM05D005463 ORTHO05D006900 2.0e-95 353.2 292 62.7
Sp7g01080 Schrenkiella parvula HOM05D005463 ORTHO05D006900 2.0e-95 353.2 305 61.6
Thhalv10027799m.g Eutrema salsugineum HOM05D005463 ORTHO05D006900 2.6e-95 352.8 289 64.7
Lj3g0018047 Lotus japonicus HOM05D005463 ORTHO05D006900 2.6e-95 352.8 312 61.2
CsaV3_7G031380 Cucumis sativus L. HOM05D005463 ORTHO05D006900 3.4e-95 352.4 309 60.2
Glyma.15G270200 Glycine max HOM05D005463 ORTHO05D006900 4.5e-95 352.1 336 58.3
BcaC02g08999 Brassica carinata HOM05D005463 ORTHO05D006900 1.0e-94 350.9 323 60.1
C04p47660 Brassica napus HOM05D005463 ORTHO05D006900 1.0e-94 350.9 327 59.6
BolC4t26367H Brassica oleracea HOM05D005463 ORTHO05D006900 1.0e-94 350.9 323 60.1
Duzib114G0804 Durio zibethinus HOM05D005463 ORTHO05D006900 1.0e-94 350.9 308 61.7
Glyma.08G150800 Glycine max HOM05D005463 ORTHO05D006900 1.3e-94 350.5 312 60.3
Sed0008391 Sechium edule HOM05D005463 ORTHO05D006900 1.3e-94 350.5 305 61.0
BcaB06g27564 Brassica carinata HOM05D005463 ORTHO05D006900 1.7e-94 350.1 334 59.0
FAN10G2111 Fragaria x ananassa HOM05D005463 ORTHO05D006900 1.7e-94 350.1 322 59.3
GSVIVG01032030001 Vitis vinifera HOM05D005463 ORTHO05D006900 1.7e-94 350.1 222 77.9
BcaB02g07924 Brassica carinata HOM05D005463 ORTHO05D006900 2.2e-94 349.7 306 62.1
CANSAT11G2548 Cannabis sativa HOM05D005463 ORTHO05D006900 2.9e-94 349.4 340 56.8
Carub.0007s3465 Capsella rubella HOM05D005463 ORTHO05D006900 3.8e-94 349.0 289 64.4
Nn7g36051 Nelumbo nucifera HOM05D005463 ORTHO05D006900 3.8e-94 349.0 298 62.8
Gohir.D10G064800 Gossypium hirsutum HOM05D005463 ORTHO05D006900 5.0e-94 348.6 308 60.7
Actinidia32326 Actinidia chinensis HOM05D005463 ORTHO05D006900 6.5e-94 348.2 283 65.0
AL7G48760 Arabidopsis lyrata HOM05D005463 ORTHO05D006900 6.5e-94 348.2 289 64.4
ECA234G3252 Erigeron canadensis HOM05D005463 ORTHO05D006900 8.5e-94 347.8 280 64.6
AT5G40850 Arabidopsis thaliana HOM05D005463 ORTHO05D006900 1.1e-93 347.4 318 59.4
CARHR213670 Cardamine hirsuta HOM05D005463 ORTHO05D006900 1.4e-93 347.1 307 62.2
vmacro13633 Vaccinium macrocarpon HOM05D005463 ORTHO05D006900 1.4e-93 347.1 291 63.9
COL.COLO4_23908 Corchorus olitorius HOM05D000259 ORTHO05D000155 2.5e-93 346.3 301 61.5
VMungo1080G0018 Vigna mungo HOM05D005463 ORTHO05D006900 3.2e-93 345.9 300 62.7
Rhsim07G0052500 Rhododendron simsii HOM05D005463 ORTHO05D006900 4.2e-93 345.5 294 64.3
Aqoxy2G00060 Aquilegia oxysepala HOM05D005463 ORTHO05D006900 9.4e-93 344.4 331 57.1
Phvul.005G038200 Phaseolus vulgaris HOM05D005463 ORTHO05D006900 9.4e-93 344.4 318 60.7
Potri.001G226900 Populus trichocarpa HOM05D005463 ORTHO05D006900 9.4e-93 344.4 310 58.4
Aa31sc48G90 Aethionema arabicum HOM05D005463 ORTHO05D006900 1.2e-92 344.0 342 57.0
Manes.07G002600 Manihot esculenta HOM05D005463 ORTHO05D006900 1.6e-92 343.6 331 58.0
Sabra16G0135300 Salix brachista HOM05D005463 ORTHO05D006900 1.6e-92 343.6 310 58.4
TWI74G0716 Tripterygium wilfordii HOM05D005463 ORTHO05D006900 1.6e-92 343.6 309 60.2
Oeu047540.1 Olea europaea HOM05D005463 ORTHO05D006900 3.6e-92 342.4 288 63.2
Gorai.011G068800 Gossypium raimondii HOM05D005463 ORTHO05D006900 7.9e-92 341.3 309 59.5
Hund11459 Selenicereus undatus HOM05D005463 ORTHO05D006900 1.0e-91 340.9 301 60.5
MD07G1002800 Malus domestica HOM05D005463 ORTHO05D006900 1.4e-91 340.5 291 62.2
Sc20g0006350 Simmondsia chinensis HOM05D005463 ORTHO05D006900 1.8e-91 340.1 290 62.1
HanXRQChr16g0520501 Helianthus annuus HOM05D005463 ORTHO05D006900 2.3e-91 339.7 297 59.9
arahy.Tifrunner.gnm1.ann1.35ND81 Arachis hypogaea HOM05D005463 ORTHO05D006900 3.0e-91 339.3 330 56.7
Peaxi162Scf00058g00512 Petunia axillaris HOM05D005463 ORTHO05D006900 3.3e-90 335.9 284 61.6
CDE09G0814 Ceratophyllum demersum HOM05D005463 ORTHO05D006900 9.7e-90 334.3 302 59.6
SGA_v2.0_scaffold95G28785 Striga asiatica HOM05D005463 ORTHO05D006900 1.7e-89 333.6 352 53.4
Ah.05g166840 Amaranthus hybridus HOM05D005463 ORTHO05D006900 2.8e-89 332.8 332 54.2
Duzib138G0896 Durio zibethinus HOM05D005463 ORTHO05D006900 4.5e-87 325.5 326 58.6
EL10Ac1g02324 Beta vulgaris HOM05D005463 ORTHO05D006900 1.0e-86 324.3 330 54.2
Medtr3g026780 Medicago truncatula HOM05D005463 ORTHO05D006900 1.0e-86 324.3 202 78.7
Zm00001eb159150 Zea mays HOM05D005463 ORTHO05D006900 1.7e-86 323.6 288 62.8
AUR62034961 Chenopodium quinoa HOM05D005463 ORTHO05D006900 3.8e-86 322.4 337 52.8
Pp3c10_8730 Physcomitrium patens HOM05D005463 ORTHO05D006900 5.0e-86 322.0 231 69.7
AUR62035771 Chenopodium quinoa HOM05D005463 ORTHO05D006900 1.1e-85 320.9 302 56.3
Mapoly0087s0054 Marchantia polymorpha HOM05D005463 ORTHO05D006900 2.5e-85 319.7 245 66.5
MBI19_g47932_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 9.4e-85 317.8 294 60.2
SMO174G0240 Selaginella moellendorffii HOM05D005463 ORTHO05D006900 1.6e-84 317.0 217 71.4
CBR_g4488 Chara braunii HOM05D005463 ORTHO05D006900 5.2e-83 312.0 242 65.7
unitig_61.g26444 Utricularia gibba HOM05D005463 ORTHO05D006900 6.7e-83 311.6 243 65.4
HPP92_020287 Vanilla planifolia HOM05D005463 ORTHO05D006900 1.5e-82 310.5 224 68.8
Zm00001eb358930 Zea mays HOM05D005463 ORTHO05D006900 2.4e-80 303.1 227 70.0
Os01g0631200 Oryza sativa ssp. japonica HOM05D005463 ORTHO05D006900 3.6e-68 262.7 176 74.4
Cpa.g.sc1133.2 Carica papaya HOM05D005463 ORTHO05D006900 8.0e-68 261.5 297 50.5
Cre09.g396401 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D006900 5.7e-66 255.4 219 60.7
PRCOL_00005728 Prasinoderma coloniale HOM05D005463 ORTHO05D006900 4.8e-65 252.3 226 58.0
MCO12G109 Micromonas commoda HOM05D005463 ORTHO05D006900 5.0e-62 242.3 225 54.2
MBI10_g23170_MAGBIO Magnolia biondii HOM05D005463 ORTHO05D006900 4.2e-61 239.2 183 67.8
SEGI_24059 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 8.3e-57 224.9 150 75.3
TPR.G33976 Trifolium pratense HOM05D005463 ORTHO05D006900 2.0e-55 220.3 218 56.0
Gohir.A10G063300 Gossypium hirsutum HOM05D005463 ORTHO05D006900 7.0e-48 195.3 217 50.7
AagrBONN_evm.TU.Sc2ySwM_344.3224 Anthoceros agrestis HOM05D005463 ORTHO05D006900 1.8e-43 180.6 176 52.8
RcHm_v2.0_Chr4g0408791 Rosa chinensis HOM05D005463 ORTHO05D006900 3.4e-42 176.4 115 77.4
Dinv43913 Davidia involucrata HOM05D005463 ORTHO05D006900 4.4e-42 176.0 186 52.2
RcHm_v2.0_Chr6g0260851 Rosa chinensis HOM05D005463 ORTHO05D006900 1.3e-41 174.5 134 67.9
Prupe.I005100 Prunus persica HOM05D005463 ORTHO05D006900 8.3e-41 171.8 114 72.8
arahy.Tifrunner.gnm1.ann1.UWT5DF Arachis hypogaea HOM05D005463 ORTHO05D006900 2.1e-39 167.2 110 74.5
Hma1.2p1_1089F.1_g255720 Hydrangea macrophylla HOM05D005463 ORTHO05D006900 8.6e-30 135.2 166 46.4
Oeu010361.1 Olea europaea HOM05D005463 ORTHO05D006900 2.8e-28 130.2 138 51.4
MSTRG.17019 Avicennia marina HOM05D005463 ORTHO05D006900 9.9e-26 121.7 142 46.5
MSTRG.17060 Avicennia marina HOM05D005463 ORTHO05D006900 6.4e-25 119.0 142 45.8
Cfa024173 Carpinus fangiana HOM05D005463 ORTHO05D006900 3.2e-24 116.7 220 34.1
Cre12.g538650 Chlamydomonas reinhardtii HOM05D005463 ORTHO05D044100 2.7e-23 113.6 218 31.7
ATR0709G040 Amborella trichopoda HOM05D005463 ORTHO05D006900 5.6e-21 105.9 65 81.5
SEGI_02284 Sequoiadendron giganteum HOM05D005463 ORTHO05D006900 3.1e-19 100.1 80 62.5
ATR0709G026 Amborella trichopoda HOM05D005463 ORTHO05D068740 5.2e-19 99.4 63 81.0
MCO11G851 Micromonas commoda HOM05D005463 ORTHO05D044100 2.0e-18 97.4 200 31.5
Haze_27481 Corylus avellana HOM05D005463 ORTHO05D006900 1.3e-17 94.7 123 41.5
CAN.G762.7 Capsicum annuum HOM05D005463 ORTHO05D006900 2.2e-17 94.0 71 64.8
RcHm_v2.0_Chr1g0375041 Rosa chinensis HOM05D005463 ORTHO05D006900 1.7e-14 84.3 49 81.6
Nn3g19661 Nelumbo nucifera HOM05D005463 ORTHO05D006900 1.8e-11 74.3 108 44.4


User provided reference genes

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