Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 2.0e-164 582.4 297 100.0
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.3e-131 473.4 294 79.9
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.3e-131 473.4 294 79.9
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 6.4e-131 471.1 293 80.2
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 1.3e-128 463.4 297 77.8
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.9e-127 459.5 296 76.4
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.5e-127 459.1 295 77.3
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 1.2e-126 456.8 293 77.5
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.8e-126 455.7 296 76.4
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 6.2e-126 454.5 293 77.1
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.8e-125 453.0 294 76.9
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.3e-125 452.6 294 75.9
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.8e-125 451.1 292 74.7
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 6.8e-125 451.1 293 76.8
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 1.3e-123 446.8 296 74.0
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 1.7e-123 446.4 296 73.6
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.2e-123 446.0 299 74.2
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 6.4e-123 444.5 293 75.8
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.9e-122 443.0 292 76.0
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 4.1e-122 441.8 295 75.3
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 7.0e-122 441.0 296 74.3
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 7.0e-122 441.0 295 74.6
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 9.2e-122 440.7 296 73.0
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 9.2e-122 440.7 295 75.3
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 1.2e-121 440.3 290 74.1
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 1.2e-121 440.3 295 72.2
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.7e-121 439.1 301 73.8
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 4.6e-121 438.3 301 73.8
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.7e-120 436.4 296 73.0
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 3.0e-120 435.6 296 72.6
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 6.6e-120 434.5 292 73.3
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 6.6e-120 434.5 292 73.3
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 8.6e-120 434.1 297 70.4
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.1e-119 433.7 296 74.0
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.5e-119 433.3 296 74.3
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 1.9e-119 433.0 298 73.5
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 2.5e-119 432.6 291 74.6
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.5e-119 432.6 296 74.0
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 3.3e-119 432.2 295 73.2
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 4.3e-119 431.8 297 75.1
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 4.3e-119 431.8 340 65.3
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 7.3e-119 431.0 293 73.7
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 9.5e-119 430.6 296 73.0
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 1.2e-118 430.3 297 71.0
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 2.1e-118 429.5 295 72.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 2.8e-118 429.1 296 72.6
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 2.8e-118 429.1 296 72.3
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 2.8e-118 429.1 296 73.6
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 3.6e-118 428.7 295 71.5
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 4.7e-118 428.3 299 71.9
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 6.2e-118 427.9 294 73.1
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 1.1e-117 427.2 293 72.7
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 1.4e-117 426.8 297 72.4
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 1.4e-117 426.8 293 72.4
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 1.4e-117 426.8 293 72.4
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 2.3e-117 426.0 295 70.2
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 3.1e-117 425.6 293 72.4
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 6.8e-117 424.5 293 70.3
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.2e-116 423.7 282 75.2
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.2e-116 423.7 293 72.0
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.2e-116 423.7 295 70.5
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.5e-116 423.3 293 69.6
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.5e-116 423.3 292 70.9
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.5e-116 423.3 296 72.0
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 2.6e-116 422.5 297 72.7
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 7.5e-116 421.0 297 71.4
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.3e-115 420.2 296 70.3
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 2.9e-115 419.1 293 70.0
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 3.7e-115 418.7 296 70.6
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 6.4e-115 417.9 296 70.6
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 8.3e-115 417.5 292 71.6
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.4e-114 416.8 296 70.3
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.4e-114 416.8 296 69.9
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 5.4e-114 414.8 295 70.2
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 9.2e-114 414.1 297 69.4
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 1.2e-113 413.7 292 68.8
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 2.7e-113 412.5 296 68.9
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.5e-113 412.1 270 75.2
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.6e-113 411.8 311 66.6
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 4.6e-113 411.8 311 66.2
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 7.8e-113 411.0 261 76.2
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.0e-112 410.6 293 71.0
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.3e-112 410.2 293 70.6
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.7e-112 409.8 310 65.2
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.7e-112 409.8 299 68.9
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 5.1e-112 408.3 282 72.3
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 5.1e-112 408.3 296 68.2
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 8.6e-112 407.5 290 70.0
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 8.6e-112 407.5 281 72.6
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 8.6e-112 407.5 294 69.0
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 1.9e-111 406.4 296 68.2
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 9.5e-111 404.1 294 67.3
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 9.5e-111 404.1 291 68.7
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.6e-110 403.3 289 69.6
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 2.8e-110 402.5 294 66.7
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 3.6e-110 402.1 294 67.0
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 4.7e-110 401.7 294 67.0
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 1.4e-109 400.2 294 67.7
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 1.4e-109 400.2 294 67.7
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.2e-109 398.3 277 72.6
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.5e-108 396.7 294 67.0
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 9.9e-108 394.0 293 67.6
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 2.2e-107 392.9 294 66.7
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 2.9e-107 392.5 293 67.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 6.4e-107 391.3 294 66.3
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.2e-106 389.0 294 67.0
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.3e-104 383.6 292 64.7
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.2e-102 377.1 249 74.7
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.8e-99 365.5 289 61.9
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 3.8e-99 365.5 293 66.2
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.5e-95 352.8 222 77.9
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 8.1e-94 347.8 319 58.3
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.9e-93 344.7 294 59.2
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 9.0e-93 344.4 225 76.9
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.2e-92 344.0 294 57.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 4.9e-91 338.6 219 72.1
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 2.4e-90 336.3 294 57.8
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 1.8e-88 330.1 223 73.1
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.8e-88 330.1 293 58.0
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 3.0e-88 329.3 261 61.7
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.5e-87 327.0 222 70.7
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 2.6e-84 316.2 295 56.3
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 2.2e-83 313.2 223 66.8
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.9e-83 312.8 279 59.5
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 4.9e-83 312.0 296 56.1
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.9e-82 310.1 274 62.4
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 2.3e-72 276.6 255 56.9
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-68 263.1 252 56.3
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 3.8e-67 259.2 176 73.3
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.7e-65 253.1 150 84.0
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 9.7e-63 244.6 165 73.9
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 5.3e-61 238.8 223 56.1
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.1e-55 221.1 203 59.1
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 3.1e-53 213.0 143 65.7
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 5.9e-52 208.8 135 74.1
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-51 208.0 149 67.8
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 3.8e-43 179.5 267 36.3
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 5.7e-39 165.6 181 50.3
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-37 161.0 138 60.1
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 4.1e-37 159.5 309 35.3
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 7.7e-36 155.2 105 70.5
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 2.0e-31 140.6 101 62.4
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 2.6e-31 140.2 106 67.0
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 3.8e-27 126.3 132 54.5
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 1.7e-22 110.9 271 27.7
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 2.3e-19 100.5 81 61.7
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 5.0e-19 99.4 113 51.3
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 1.5e-18 97.8 126 47.6
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 5.2e-16 89.4 65 69.2
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-13 79.7 106 47.2
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-11 75.1 106 45.3
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 2.1e-09 67.4 112 42.0
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 1.2e-07 61.6 45 60.0
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.6e-07 60.5 54 53.7
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 5.8e-07 59.3 76 44.7
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.9e-06 57.0 54 50.0
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.9e-06 57.0 54 50.0


User provided reference genes

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