Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 0.0e+00 1634.0 812 100.0
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 4.9e-266 921.4 819 58.9
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 1.7e-263 912.9 816 56.7
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 7.0e-257 891.0 818 56.4
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 1.2e-256 890.2 818 55.4
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.6e-256 888.3 818 56.8
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.3e-254 881.7 813 56.7
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 7.3e-254 880.9 817 57.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.1e-253 879.4 818 56.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 8.9e-252 874.0 814 56.5
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 1.5e-251 873.2 815 56.0
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 4.4e-251 871.7 819 56.3
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 7.5e-251 870.9 822 56.1
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 9.8e-251 870.5 824 55.6
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 3.2e-249 865.5 816 55.5
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 4.1e-249 865.1 815 54.8
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 4.1e-249 865.1 813 54.9
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.7e-248 862.4 813 54.7
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 4.6e-248 861.7 813 55.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 7.8e-248 860.9 818 55.0
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 5.1e-247 858.2 818 55.5
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 3.3e-246 855.5 818 55.4
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 4.3e-246 855.1 816 54.9
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 4.3e-246 855.1 813 54.7
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 9.5e-246 854.0 815 54.5
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 4.0e-244 848.6 810 53.5
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.8e-244 847.8 810 54.8
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.5e-243 846.7 813 53.8
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 3.4e-243 845.5 818 54.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 3.4e-243 845.5 819 53.1
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 7.6e-243 844.3 811 55.4
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 9.9e-243 844.0 810 54.7
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 1.3e-242 843.6 812 51.7
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.4e-241 840.1 837 54.2
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.9e-241 839.7 819 53.6
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 3.2e-241 839.0 877 51.8
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 9.2e-241 837.4 818 54.3
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.1e-240 836.3 811 54.7
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 3.5e-240 835.5 815 54.6
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 4.6e-240 835.1 814 53.6
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 7.8e-240 834.3 818 52.9
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 1.3e-239 833.6 813 54.2
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 1.7e-239 833.2 819 53.6
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 3.9e-239 832.0 826 53.4
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 3.3e-238 828.9 820 53.3
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 7.3e-238 827.8 817 52.5
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 9.6e-238 827.4 812 53.9
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 2.8e-237 825.9 824 54.1
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 4.7e-237 825.1 818 53.2
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 3.1e-236 822.4 819 53.6
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 1.2e-235 820.5 816 52.7
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 3.4e-235 818.9 813 53.0
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 5.8e-235 818.1 859 51.0
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 9.9e-235 817.4 818 52.0
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 1.3e-234 817.0 822 53.3
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 3.8e-234 815.5 791 54.7
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 3.2e-233 812.4 814 51.8
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 5.4e-233 811.6 814 53.2
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 5.4e-233 811.6 811 52.0
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.1e-232 809.7 811 53.1
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 6.0e-232 808.1 813 52.5
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.0e-232 808.1 873 50.3
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 7.8e-232 807.7 813 52.5
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 1.1e-230 803.9 816 52.0
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 6.2e-229 798.1 810 51.9
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 9.9e-227 790.8 822 51.7
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 1.7e-226 790.0 814 52.1
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.9e-226 789.3 825 51.0
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 1.9e-225 786.6 818 51.5
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 9.3e-225 784.3 825 51.2
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 1.2e-224 783.9 825 51.2
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.2e-224 783.9 821 50.9
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.6e-224 783.5 815 50.9
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 2.7e-224 782.7 833 50.4
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.7e-224 782.7 807 49.3
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 4.6e-224 781.9 825 51.0
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 7.9e-224 781.2 827 50.3
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.0e-223 780.8 828 51.1
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 5.1e-223 778.5 810 49.4
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 8.7e-223 777.7 811 51.7
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 2.5e-222 776.2 829 50.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 2.5e-222 776.2 811 50.7
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.3e-222 775.8 823 50.2
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.4e-217 760.4 818 49.4
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 1.9e-217 760.0 814 50.9
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 2.4e-217 759.6 838 49.4
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 4.6e-216 755.4 827 48.5
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 4.6e-216 755.4 814 51.0
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 6.0e-216 755.0 832 49.0
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 6.9e-212 741.5 821 49.2
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 2.5e-206 723.0 740 52.4
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 2.8e-205 719.5 815 48.2
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 1.2e-203 714.1 819 46.5
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 4.2e-201 705.7 821 46.7
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 1.2e-200 704.1 629 56.1
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 6.1e-200 701.8 825 47.5
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 1.5e-198 697.2 831 47.3
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 3.3e-198 696.0 581 61.6
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.8e-180 637.1 563 57.4
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 2.0e-179 633.6 902 43.5
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 5.0e-178 629.0 813 41.6
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 1.0e-151 541.6 841 37.1
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 3.0e-151 540.0 820 39.9
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.0e-147 527.3 822 39.4
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 3.5e-147 526.6 851 39.2
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 3.9e-146 523.1 839 38.3
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 5.6e-145 519.2 855 38.0
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 6.2e-144 515.8 464 57.8
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 9.5e-137 491.9 830 37.8
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.1e-128 464.2 481 53.0
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 2.2e-125 454.1 821 36.5
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 4.9e-125 453.0 850 35.1
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.5e-118 431.4 590 43.4
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 4.9e-117 426.4 819 37.2
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 6.0e-115 419.5 682 37.2
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 3.9e-106 390.2 825 34.8
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 5.5e-100 369.8 340 57.9
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 2.2e-93 347.8 401 48.4
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 4.3e-89 333.6 636 33.8
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 7.7e-70 269.6 744 30.6
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 8.8e-66 256.1 369 42.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.6e-54 218.8 157 66.9
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 3.0e-50 204.5 276 44.6
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 5.7e-49 200.3 271 44.6
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 4.8e-48 197.2 274 44.2
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 7.7e-46 189.9 843 24.2
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.1e-39 169.5 160 56.2
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 3.1e-39 167.9 187 47.6
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 1.9e-36 158.7 472 29.9
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 3.4e-33 147.9 211 41.7
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 1.6e-30 139.0 107 62.6
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.3e-21 109.4 136 42.6
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 7.5e-17 93.6 116 44.0
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 9.9e-17 93.2 133 39.8
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.1e-12 79.7 72 50.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 7.3e-12 77.0 63 58.7
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 4.7e-11 74.3 115 39.1
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 8.9e-10 70.1 115 38.3
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 1.5e-09 69.3 80 43.8
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 9.9e-09 66.6 64 48.4
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 1.2e-06 59.7 97 37.1
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 6.0e-06 57.4 92 42.4
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 7.8e-06 57.0 46 58.7


User provided reference genes

Program Settings