Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1098G084 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.8e-111 406.0 208 100.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.3e-85 320.1 240 73.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 5.2e-55 218.4 204 61.3
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 1.2e-54 217.2 177 67.8
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 2.0e-54 216.5 237 54.4
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.4e-54 215.3 208 61.5
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 9.8e-54 214.2 208 61.1
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 1.4e-52 210.3 176 66.5
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.9e-52 209.9 177 65.5
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.9e-52 209.9 240 54.6
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 1.9e-52 209.9 240 54.6
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 2.4e-52 209.5 237 55.3
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 5.4e-52 208.4 236 54.2
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 7.0e-52 208.0 177 64.4
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 7.0e-52 208.0 177 65.0
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 7.0e-52 208.0 227 57.3
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 7.0e-52 208.0 242 54.5
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 9.2e-52 207.6 177 65.0
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 1.2e-51 207.2 177 64.4
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.7e-51 206.1 222 57.2
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 3.5e-51 205.7 186 61.3
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 4.6e-51 205.3 177 64.4
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 4.6e-51 205.3 184 62.0
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.3e-50 203.8 207 58.9
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.3e-50 203.8 183 62.3
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 5.0e-50 201.8 218 57.8
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.0e-50 201.8 244 54.1
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 5.0e-50 201.8 231 55.4
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.6e-50 201.1 176 64.2
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 8.6e-50 201.1 176 63.6
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 2.5e-49 199.5 185 63.2
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.3e-49 198.7 177 63.3
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 9.5e-49 197.6 221 53.8
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 1.6e-48 196.8 195 57.9
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 2.1e-48 196.4 179 63.1
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 2.8e-48 196.1 205 57.6
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 3.6e-48 195.7 199 56.8
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 3.6e-48 195.7 198 58.6
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.7e-48 195.3 195 57.4
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 4.7e-48 195.3 176 62.5
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 6.2e-48 194.9 240 52.5
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 8.0e-48 194.5 177 62.1
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-47 194.1 195 57.4
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 1.1e-47 194.1 195 57.4
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.4e-47 193.7 179 62.0
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 1.4e-47 193.7 183 61.7
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 1.8e-47 193.4 177 62.1
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 3.1e-47 192.6 177 61.0
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.1e-47 192.6 195 56.9
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 4.0e-47 192.2 237 52.7
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 4.0e-47 192.2 198 58.1
Oeu043710.2 Olea europaea HOM05D002352 ORTHO05D003724 4.0e-47 192.2 198 58.1
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 4.0e-47 192.2 219 54.3
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 5.2e-47 191.8 221 54.3
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 5.2e-47 191.8 222 54.1
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 5.2e-47 191.8 222 54.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 6.8e-47 191.4 229 51.5
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 6.8e-47 191.4 183 58.5
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 6.8e-47 191.4 177 61.0
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 6.8e-47 191.4 179 61.5
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 8.9e-47 191.0 235 52.3
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 1.2e-46 190.7 177 61.0
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.2e-46 190.7 226 52.2
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 1.5e-46 190.3 177 60.5
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 2.0e-46 189.9 177 60.5
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.0e-46 189.9 177 60.5
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.0e-46 189.9 177 60.5
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.0e-46 189.9 177 60.5
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 2.6e-46 189.5 177 60.5
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.6e-46 189.5 177 60.5
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 2.6e-46 189.5 229 52.4
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 3.4e-46 189.1 215 54.4
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 1.3e-45 187.2 177 59.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 1.7e-45 186.8 177 60.5
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.7e-45 186.8 174 62.6
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 1.7e-45 186.8 177 60.5
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 2.9e-45 186.0 177 59.9
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.9e-45 185.3 177 60.5
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 8.3e-45 184.5 177 59.9
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 8.3e-45 184.5 177 59.3
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 8.3e-45 184.5 177 59.3
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 8.3e-45 184.5 177 59.3
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 1.1e-44 184.1 177 58.8
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.1e-44 184.1 177 59.3
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.4e-44 183.7 183 57.4
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.9e-44 183.3 176 59.7
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 1.9e-44 183.3 176 59.7
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 1.9e-44 183.3 176 59.7
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 4.1e-44 182.2 178 58.4
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 7.0e-44 181.4 177 59.3
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 7.0e-44 181.4 177 58.8
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 9.2e-44 181.0 179 58.7
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 2.7e-43 179.5 177 58.2
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 2.7e-43 179.5 179 58.1
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 3.5e-43 179.1 177 58.8
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 3.5e-43 179.1 177 58.8
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 4.6e-43 178.7 204 53.9
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 6.0e-43 178.3 178 58.4
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 1.7e-42 176.8 239 46.4
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.3e-42 176.4 183 54.6
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 2.3e-42 176.4 217 48.4
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 3.0e-42 176.0 170 57.6
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 3.0e-42 176.0 183 54.6
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 3.9e-42 175.6 183 54.6
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 5.1e-42 175.3 177 57.6
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 6.6e-42 174.9 176 55.1
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 8.6e-42 174.5 170 57.1
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 8.6e-42 174.5 170 57.1
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 8.6e-42 174.5 170 57.1
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 8.6e-42 174.5 170 57.1
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 8.6e-42 174.5 176 58.0
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 1.5e-41 173.7 170 57.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 1.9e-41 173.3 163 58.3
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 4.3e-41 172.2 170 56.5
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 4.3e-41 172.2 170 56.5
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 4.3e-41 172.2 170 56.5
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 7.3e-41 171.4 170 55.9
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 1.2e-40 170.6 170 56.5
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 1.2e-40 170.6 170 56.5
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.6e-40 170.2 170 56.5
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 5.2e-39 165.2 178 59.0
ATR1081G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 7.5e-38 161.4 82 96.3
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.3e-37 160.6 190 51.6
ATR0757G041 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.2e-37 159.8 99 88.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.2e-35 154.1 176 55.1
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.0e-34 151.0 145 62.8
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 2.5e-33 146.4 188 49.5
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 5.2e-31 138.7 162 51.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 1.5e-30 137.1 194 46.4
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 1.5e-30 137.1 162 51.9
Lsat_1_v5_gn_5_24520 Lactuca sativa HOM05D002352 ORTHO05D003724 2.0e-30 136.7 97 73.2
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.3e-29 134.0 139 56.8
MBI13_g10046_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.7e-29 133.7 83 79.5
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 1.9e-28 130.2 108 66.7
Lsat_1_v5_gn_8_88460 Lactuca sativa HOM05D002352 ORTHO05D003724 9.2e-28 127.9 82 78.0
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.6e-27 127.1 85 78.8
Cpa.g.c36687 Carica papaya HOM05D002352 ORTHO05D003724 3.6e-24 115.9 172 43.0
SHI23485 Sapria himalayana HOM05D002352 ORTHO05D003724 2.4e-23 113.2 147 42.9
Lsat_1_v5_gn_8_115100 Lactuca sativa HOM05D002352 ORTHO05D003724 6.9e-23 111.7 73 72.6
Hma1.2p1_0617F.1_g190130 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 1.7e-21 107.1 65 81.5
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 2.9e-21 106.3 187 40.1
Nn1g03998 Nelumbo nucifera HOM05D002352 ORTHO05D003724 6.4e-21 105.1 188 41.0
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.4e-20 103.2 60 81.7
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 7.1e-20 101.7 65 76.9
ATR0589G098 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.6e-18 95.1 60 83.3
Actinidia05606 Actinidia chinensis HOM05D002352 ORTHO05D003724 9.6e-17 91.3 129 44.2
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 2.8e-16 89.7 167 41.3
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 1.4e-15 87.4 55 80.0
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 4.9e-13 79.0 49 81.6
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 6.4e-13 78.6 84 56.0
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 1.8e-10 70.5 52 67.3
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 2.3e-10 70.1 45 77.8
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 8.1e-08 61.6 139 34.5
Eucgr.D00654 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.8e-07 60.5 62 51.6
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.5e-06 55.8 38 73.7


User provided reference genes

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