Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 5.2e-148 527.7 272 100.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.0e-111 407.1 272 76.1
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 7.7e-107 391.0 272 72.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.3e-106 390.2 259 74.9
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.7e-106 389.8 272 73.5
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.2e-106 389.4 266 74.4
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 2.2e-106 389.4 272 72.4
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.2e-104 383.6 267 73.8
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.7e-104 382.5 267 72.3
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 6.1e-104 381.3 273 71.1
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 7.9e-104 380.9 272 71.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 3.0e-103 379.0 270 71.5
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 5.1e-103 378.3 263 73.4
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 6.7e-103 377.9 278 69.8
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 8.8e-103 377.5 277 71.5
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.0e-102 376.3 246 75.2
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 2.0e-102 376.3 257 73.5
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.3e-102 375.2 252 72.2
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 4.3e-102 375.2 272 71.0
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 7.4e-102 374.4 258 72.9
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 7.4e-102 374.4 257 73.2
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.3e-101 373.6 281 68.3
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.7e-101 373.2 251 74.9
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.7e-101 373.2 252 75.0
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.7e-101 373.2 280 70.0
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.7e-101 373.2 257 72.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 2.8e-101 372.5 273 71.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.7e-101 372.1 273 71.1
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 4.8e-101 371.7 257 73.9
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 6.3e-101 371.3 276 69.6
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 8.2e-101 370.9 260 72.7
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 1.4e-100 370.2 295 66.8
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.4e-100 369.4 275 70.2
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 2.4e-100 369.4 269 71.4
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.1e-100 368.6 268 72.8
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 4.1e-100 368.6 276 68.1
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 4.1e-100 368.6 252 73.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 6.9e-100 367.9 266 71.4
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 6.9e-100 367.9 275 67.6
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 9.1e-100 367.5 258 73.3
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 9.1e-100 367.5 238 76.9
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-99 366.7 251 70.9
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.6e-99 365.9 283 68.6
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.5e-99 365.2 272 68.4
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 4.5e-99 365.2 268 69.8
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 5.9e-99 364.8 277 69.0
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 5.9e-99 364.8 266 68.0
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 7.7e-99 364.4 277 66.4
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 7.7e-99 364.4 256 72.7
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 1.7e-98 363.2 245 71.4
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 2.2e-98 362.8 278 66.9
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 2.9e-98 362.5 278 68.3
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.8e-98 362.1 297 63.3
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.1e-97 360.5 262 71.4
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.4e-97 360.1 248 71.4
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.9e-97 359.8 241 75.1
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 9.4e-97 357.5 237 75.9
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.4e-97 357.5 271 66.4
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 9.4e-97 357.5 240 75.4
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.7e-96 355.9 242 73.6
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 3.6e-96 355.5 286 65.7
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 4.7e-96 355.1 249 72.3
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 6.1e-96 354.8 252 70.6
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 1.4e-95 353.6 247 71.3
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 2.3e-95 352.8 271 67.2
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 2.3e-95 352.8 259 68.7
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 3.0e-95 352.4 271 66.8
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 3.0e-95 352.4 274 66.8
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 6.7e-95 351.3 271 67.2
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 8.8e-95 350.9 268 67.9
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 8.8e-95 350.9 273 66.7
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 8.8e-95 350.9 266 68.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 2.0e-94 349.7 266 68.0
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 2.6e-94 349.4 298 63.4
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.6e-94 349.4 238 72.7
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 4.4e-94 348.6 223 77.6
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 5.7e-94 348.2 266 68.0
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 9.7e-94 347.4 266 68.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 1.1e-92 344.0 223 75.3
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 1.8e-92 343.2 223 75.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 9.1e-92 340.9 240 72.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.0e-91 339.7 273 65.2
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.0e-87 325.9 279 62.0
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 5.2e-87 325.1 238 68.5
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 1.5e-86 323.6 239 71.1
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 2.6e-86 322.8 252 65.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.4e-86 322.0 255 66.7
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.2e-85 319.7 223 72.6
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.1e-84 315.8 272 64.0
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.2e-83 313.9 286 59.4
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.7e-83 312.8 262 61.8
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 3.6e-80 302.4 196 74.5
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 4.7e-80 302.0 217 67.7
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-79 300.1 280 59.6
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 6.8e-79 298.1 272 59.9
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.8e-79 298.1 198 75.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 1.0e-74 284.3 324 50.6
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 3.2e-73 279.3 233 61.4
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 7.2e-73 278.1 172 77.9
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 4.7e-72 275.4 197 68.5
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.2e-70 270.8 273 55.3
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 1.2e-70 270.8 195 69.7
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 3.4e-70 269.2 208 68.3
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 7.5e-70 268.1 249 56.2
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 5.4e-68 261.9 230 60.9
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.3e-66 256.5 176 72.7
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 3.0e-58 229.6 245 47.3
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 2.5e-57 226.5 223 55.6
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 7.3e-57 224.9 241 48.5
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 4.0e-55 219.2 231 49.8
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-49 201.1 167 58.7
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 2.8e-48 196.4 199 53.8
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.9e-45 185.7 225 48.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.0e-39 166.0 122 68.9
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 3.2e-36 156.4 223 43.0
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 3.3e-33 146.4 91 74.7
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 8.4e-29 131.7 96 69.8
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-27 127.5 117 60.7
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-24 117.5 117 56.4
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.1e-23 113.2 78 71.8
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.5e-22 110.9 168 41.1
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 2.9e-21 106.7 73 74.0
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.9e-21 106.7 117 52.1
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 3.2e-20 103.2 123 48.0
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 1.6e-19 100.9 88 54.5
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 3.3e-17 93.2 82 58.5
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 1.4e-15 87.8 59 71.2
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 4.0e-15 86.3 285 29.5
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 1.7e-13 80.9 231 28.1
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.2e-13 80.5 50 76.0
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 4.9e-13 79.3 57 64.9
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 8.4e-13 78.6 143 37.8
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 8.4e-13 78.6 93 49.5
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.1e-12 78.2 59 59.3
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-12 77.4 55 65.5
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-12 77.4 55 65.5
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 9.3e-12 75.1 51 66.7
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 2.1e-11 73.9 102 43.1
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.8e-10 70.9 102 42.2
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 3.9e-10 69.7 82 51.2
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.5e-09 67.8 211 26.5
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 2.5e-09 67.0 234 23.5
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.6e-09 65.9 56 64.3
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 9.6e-09 65.1 37 83.8
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 4.8e-08 62.8 40 77.5
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.4e-07 61.2 93 40.9
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 3.1e-07 60.1 244 23.0
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 4.0e-07 59.7 216 21.8
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 4.5e-06 56.2 213 26.8


User provided reference genes

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