Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.9e-197 691.8 376 100.0
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.1e-103 380.9 370 59.5
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 2.5e-100 369.8 374 57.0
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 5.6e-100 368.6 374 58.3
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 8.1e-99 364.8 373 57.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 4.0e-98 362.5 370 58.1
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 1.3e-96 357.5 352 57.7
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 2.2e-96 356.7 348 57.5
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 4.9e-96 355.5 361 56.5
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 1.9e-95 353.6 367 55.0
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 3.2e-95 352.8 361 57.3
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 7.1e-95 351.7 348 57.2
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.1e-95 351.7 362 57.5
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.6e-94 350.5 367 56.1
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.1e-94 350.1 368 55.2
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 2.7e-94 349.7 351 56.4
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 3.5e-94 349.4 385 54.8
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 4.6e-94 349.0 375 54.4
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 6.0e-94 348.6 348 56.6
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.8e-93 347.1 400 51.2
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 5.1e-93 345.5 373 54.2
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-92 344.4 348 56.3
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.9e-92 343.6 368 54.9
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 7.4e-92 341.7 368 54.9
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.6e-92 341.3 348 55.7
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.3e-91 340.9 365 54.2
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 2.1e-91 340.1 374 53.5
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.1e-91 340.1 370 54.9
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.4e-90 337.4 348 55.2
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-90 337.4 367 53.7
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.8e-90 337.0 368 55.2
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 2.4e-90 336.7 348 56.6
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 3.1e-90 336.3 365 53.4
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 4.0e-90 335.9 370 54.9
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.0e-90 335.9 348 55.7
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 4.0e-90 335.9 367 54.2
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 9.0e-90 334.7 376 52.9
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 9.0e-90 334.7 362 53.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.2e-89 334.3 362 54.1
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 1.2e-89 334.3 410 49.5
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.0e-89 333.6 362 54.1
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 2.0e-89 333.6 350 54.9
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 2.6e-89 333.2 367 53.7
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 3.4e-89 332.8 372 52.7
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.7e-88 330.5 350 54.6
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.9e-88 329.7 424 49.3
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 3.8e-88 329.3 363 52.6
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 6.5e-88 328.6 348 55.5
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.4e-87 327.4 348 54.6
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 3.2e-87 326.2 389 51.9
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 4.2e-87 325.9 358 55.0
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 5.5e-87 325.5 348 54.6
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 7.1e-87 325.1 361 54.3
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 9.3e-87 324.7 367 51.5
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 2.1e-86 323.6 362 53.6
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 2.7e-86 323.2 348 54.0
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 4.6e-86 322.4 371 52.0
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 7.9e-86 321.6 370 52.2
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.0e-85 321.2 392 51.8
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 2.3e-85 320.1 367 52.3
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 2.3e-85 320.1 365 52.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 5.1e-85 318.9 348 53.4
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 8.7e-85 318.2 365 52.3
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-84 315.8 348 53.4
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 4.3e-84 315.8 362 52.8
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.6e-83 313.9 365 51.2
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 2.8e-83 313.2 362 51.1
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 4.8e-83 312.4 345 53.3
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 8.2e-83 311.6 362 50.8
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 1.1e-82 311.2 362 50.8
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.1e-82 311.2 350 50.0
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 2.4e-82 310.1 365 50.4
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 6.9e-82 308.5 381 48.0
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 1.5e-81 307.4 366 48.9
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 2.0e-81 307.0 366 49.2
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 4.5e-81 305.8 366 50.3
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.3e-80 304.3 334 53.0
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.7e-80 303.9 348 49.4
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 1.7e-80 303.9 290 56.9
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 5.5e-79 298.9 366 50.5
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 5.5e-79 298.9 366 50.5
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 7.2e-79 298.5 388 47.2
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 9.3e-79 298.1 366 50.5
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.2e-78 297.7 371 47.4
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 2.1e-78 297.0 368 50.0
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.1e-78 297.0 371 49.3
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 2.1e-78 297.0 367 49.0
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 2.7e-78 296.6 355 49.3
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 2.7e-78 296.6 334 53.0
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 6.1e-78 295.4 330 53.0
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.8e-77 293.9 323 54.2
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.8e-77 293.9 308 54.5
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 3.0e-77 293.1 366 47.3
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 3.9e-77 292.7 366 49.5
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 8.7e-77 291.6 315 55.2
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 4.3e-76 289.3 482 41.5
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 5.7e-76 288.9 385 47.3
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 5.7e-76 288.9 473 42.5
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 5.7e-76 288.9 330 53.3
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.6e-75 287.3 348 47.1
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.2e-75 287.0 308 54.2
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 6.3e-75 285.4 312 54.5
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 1.4e-74 284.3 312 55.4
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 7.7e-73 278.5 362 48.3
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.2e-72 276.9 362 48.1
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.4e-71 274.2 311 52.1
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 3.2e-71 273.1 311 52.1
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 9.4e-71 271.6 311 51.4
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 6.1e-70 268.9 367 47.7
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.0e-69 266.5 355 49.3
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.5e-68 264.2 283 53.0
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.8e-67 260.0 312 51.0
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 3.4e-65 253.1 303 48.5
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 3.4e-65 253.1 308 48.7
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 5.0e-64 249.2 274 53.6
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.0e-64 249.2 238 58.8
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 1.1e-63 248.1 331 44.7
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 7.2e-63 245.4 580 34.8
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 5.7e-60 235.7 338 44.7
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 1.6e-54 217.6 334 45.8
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 2.7e-49 200.3 172 63.4
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 5.9e-49 199.1 281 45.9
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 5.9e-49 199.1 241 49.8
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 7.7e-49 198.7 217 52.1
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.0e-48 198.4 355 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.9e-48 196.8 338 36.7
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 8.5e-48 195.3 344 38.7
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.5e-47 194.5 374 35.8
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 2.1e-46 190.7 260 45.4
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.7e-46 189.5 152 65.8
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 8.0e-46 188.7 128 74.2
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.2e-41 174.9 320 37.2
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 5.9e-41 172.6 152 63.8
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.6e-36 157.1 113 69.9
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.6e-36 157.1 114 73.7
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.6e-36 157.1 114 73.7
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 9.8e-36 155.2 186 46.2
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 3.1e-34 150.2 187 48.1
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.0e-32 145.2 237 41.8
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.5e-31 141.4 183 47.5
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 2.2e-27 127.5 100 68.0
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-26 123.6 153 46.4
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 6.2e-22 109.4 130 50.8
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 6.4e-19 99.4 128 46.9
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 9.2e-18 95.5 135 45.2
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.2e-17 95.1 135 45.2
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 2.3e-16 90.9 157 41.4
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 3.9e-16 90.1 303 29.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.1e-14 84.3 106 45.3
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.9e-07 61.2 243 24.7
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 5.6e-07 59.7 66 57.6


User provided reference genes

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