Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 2.0e-136 489.2 262 100.0
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 7.6e-120 434.1 262 86.6
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.0
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.0
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 87.0
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 86.3
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 86.3
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 3.8e-119 431.8 262 85.9
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 1.4e-118 429.9 262 86.3
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 84.4
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.9
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 84.7
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.5
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.1
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.7
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.7
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 85.1
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 84.4
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.7
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 84.7
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 4.6e-117 424.9 262 85.1
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 85.1
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 85.1
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 83.2
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 82.4
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.4
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 82.8
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 3.9e-116 421.8 263 86.3
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 82.1
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 84.4
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.7
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 82.1
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 81.7
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 6.7e-116 421.0 264 84.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 8.7e-116 420.6 262 82.1
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 82.1
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.4
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 1.9e-115 419.5 262 81.3
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 3.3e-115 418.7 263 85.6
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 81.7
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 82.8
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 84.0
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.3e-115 418.3 262 82.4
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 82.8
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 81.3
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.6e-115 417.9 262 81.3
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 7.4e-115 417.5 263 85.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 9.6e-115 417.2 261 82.0
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 9.6e-115 417.2 262 83.6
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 83.6
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 83.6
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 80.9
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 83.2
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 2.8e-114 415.6 262 81.3
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.2
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 82.8
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 80.2
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 81.7
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 83.2
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.4e-113 412.5 262 82.4
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 3.1e-113 412.1 263 83.3
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 4.0e-113 411.8 262 82.4
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 81.7
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 82.1
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 80.5
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 1.5e-112 409.8 262 82.4
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 81.3
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 3.4e-112 408.7 259 82.2
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 3.4e-112 408.7 262 80.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 4.5e-112 408.3 262 80.9
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 82.8
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 80.2
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 7.6e-112 407.5 262 79.8
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 7.6e-112 407.5 262 79.8
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 9.9e-112 407.1 262 81.3
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 81.3
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 1.3e-111 406.8 262 81.3
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 2.9e-111 405.6 262 80.5
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 2.9e-111 405.6 253 83.0
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 79.0
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 3.8e-111 405.2 262 79.0
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 4.9e-111 404.8 262 80.2
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 80.9
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 6.4e-111 404.4 262 79.4
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 7.1e-110 401.0 263 82.1
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 9.3e-110 400.6 262 79.0
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 9.3e-110 400.6 264 80.3
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 3.5e-109 398.7 262 77.9
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 3.5e-109 398.7 262 82.4
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.0e-108 395.6 270 78.9
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 77.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 3.9e-108 395.2 263 82.1
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 3.9e-108 395.2 264 79.5
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 6.7e-108 394.4 263 82.1
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 5.6e-107 391.3 246 83.3
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 5.6e-107 391.3 246 83.7
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 7.4e-107 391.0 252 84.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 77.9
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 1.6e-106 389.8 270 77.8
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 78.6
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 1.8e-105 386.3 263 81.7
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 3.1e-105 385.6 262 77.9
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 3.1e-105 385.6 263 80.6
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 5.3e-105 384.8 260 78.5
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.0e-104 382.9 263 80.2
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 75.2
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 75.2
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 75.2
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 75.2
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 75.2
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 75.2
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 3.4e-104 382.1 262 74.8
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 75.2
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 4.5e-104 381.7 262 75.2
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 7.6e-104 380.9 262 74.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 74.8
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.0e-103 380.6 262 74.8
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 1.7e-103 379.8 262 75.2
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 2.2e-103 379.4 262 74.4
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 2.9e-103 379.0 262 74.4
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 4.9e-103 378.3 262 74.8
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 4.9e-103 378.3 262 74.4
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 6.5e-103 377.9 262 74.8
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 74.9
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 74.9
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 8.4e-103 377.5 263 74.9
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 9.3e-102 374.0 247 81.0
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 4.6e-101 371.7 263 78.7
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 8.2e-98 360.9 264 73.5
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 8.2e-98 360.9 248 74.6
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 3.1e-97 359.0 262 74.4
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.5e-96 356.7 262 72.5
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.5e-96 356.7 241 81.7
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.1e-94 350.5 218 84.4
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 3.2e-94 349.0 234 77.4
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 1.8e-92 343.2 231 76.6
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.5e-91 339.3 263 67.7
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 1.3e-90 337.0 210 83.8
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.1e-89 332.4 263 66.5
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 6.9e-89 331.3 214 82.7
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 1.2e-88 330.5 219 76.7
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 5.9e-88 328.2 262 69.5
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 2.5e-86 322.8 265 66.4
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 1.5e-83 313.5 267 64.8
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 5.3e-81 305.1 218 71.1
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 6.5e-79 298.1 232 64.2
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 8.8e-76 287.7 204 76.5
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.1e-75 287.3 250 65.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 7.4e-75 284.6 246 64.6
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 1.2e-72 277.3 208 69.2
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.5e-72 275.8 250 61.6
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 7.2e-70 268.1 263 58.9
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.0e-68 262.3 211 66.4
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 8.8e-68 261.2 270 56.7
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 1.3e-66 257.3 262 59.2
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.0e-57 224.9 235 58.3
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 1.0e-55 221.1 244 50.0
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 4.7e-53 212.2 130 83.8
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 9.8e-51 204.5 247 47.8
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 2.8e-50 203.0 138 77.5
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.1e-49 199.1 120 84.2
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.4e-44 184.1 118 80.5
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.3e-42 177.6 179 57.0
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 3.2e-33 146.4 191 48.7
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 5.4e-33 145.6 127 66.1
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 3.6e-29 132.9 96 68.8
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 1.3e-23 114.4 69 85.5


User provided reference genes

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