Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G100 Amborella trichopoda HOM05D005152 ORTHO05D006162 0.0e+00 1245.0 637 100.0
Nn7g36798 Nelumbo nucifera HOM05D005152 ORTHO05D006162 3.9e-117 426.4 650 41.5
Actinidia24470 Actinidia chinensis HOM05D005152 ORTHO05D006162 3.6e-107 393.3 652 39.7
vmacro12803 Vaccinium macrocarpon HOM05D005152 ORTHO05D006162 5.2e-106 389.4 642 39.6
Lj2C487T6 Lonicera japonica HOM05D005152 ORTHO05D006162 4.3e-100 369.8 651 37.6
CAN.G1514.1 Capsicum annuum HOM05D005152 ORTHO05D006162 3.1e-98 363.6 647 36.9
Prupe.4G267500 Prunus persica HOM05D005152 ORTHO05D006162 3.1e-98 363.6 656 37.7
LjContig00564g0003451 Lotus japonicus HOM05D005152 ORTHO05D006162 4.0e-98 363.2 653 38.6
Sopen07g023910 Solanum pennellii HOM05D005152 ORTHO05D006162 8.9e-98 362.1 649 36.2
PGSC0003DMG400017379 Solanum tuberosum HOM05D005152 ORTHO05D006162 8.9e-98 362.1 640 36.2
QL01p016753 Quercus lobata HOM05D005152 ORTHO05D006162 2.6e-97 360.5 650 38.6
MSTRG.20931 Avicennia marina HOM05D005152 ORTHO05D006162 4.4e-97 359.8 641 37.6
MBI19_g42986_MAGBIO Magnolia biondii HOM05D005152 ORTHO05D006162 2.9e-96 357.1 660 37.7
Solyc07g045370.3 Solanum lycopersicum HOM05D005152 ORTHO05D006162 2.9e-96 357.1 649 36.1
RcHm_v2.0_Chr7g0223811 Rosa chinensis HOM05D005152 ORTHO05D006162 1.1e-95 355.1 668 37.1
Haze_23256 Corylus avellana HOM05D005152 ORTHO05D006162 5.4e-95 352.8 653 39.1
Thecc.03G310200 Theobroma cacao HOM05D005152 ORTHO05D006162 5.4e-95 352.8 656 37.3
Ciclev10014592m.g Citrus clementina HOM05D005152 ORTHO05D006162 7.1e-95 352.4 659 37.5
Lsat_1_v5_gn_2_33000 Lactuca sativa HOM05D005152 ORTHO05D006162 1.6e-94 351.3 627 37.0
FvH4_5g29960 Fragaria vesca HOM05D005152 ORTHO05D006162 2.7e-94 350.5 666 35.4
Peaxi162Scf00014g00212 Petunia axillaris HOM05D005152 ORTHO05D006162 2.3e-93 347.4 657 35.9
Ca_06203_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 3.0e-93 347.1 648 37.2
Ca_06206_v3 Cicer arietinum L. HOM05D005152 ORTHO05D006162 3.0e-93 347.1 648 37.2
Eucgr.J00691 Eucalyptus grandis HOM05D005152 ORTHO05D006162 5.1e-93 346.3 636 37.4
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.5e-92 344.7 601 38.6
PSO339G4523 Papaver somniferum HOM05D005152 ORTHO05D006162 1.5e-92 344.7 646 36.8
SalBow4G0649 Salvia bowleyana HOM05D005152 ORTHO05D006162 1.5e-92 344.7 636 37.3
Nitab4.5_0000236g0070 Nicotiana tabacum HOM05D005152 ORTHO05D006162 1.9e-92 344.4 635 35.7
FAN13G1175 Fragaria x ananassa HOM05D005152 ORTHO05D006162 2.5e-92 344.0 674 34.6
Lalb_Chr10g0106191 Lupinus albus HOM05D005152 ORTHO05D006162 2.5e-92 344.0 661 36.9
MD15G1434100 Malus domestica HOM05D005152 ORTHO05D006162 2.5e-92 344.0 642 38.0
arahy.Tifrunner.gnm1.ann1.3CD1QA Arachis hypogaea HOM05D005152 ORTHO05D006162 5.6e-92 342.8 642 36.8
arahy.Tifrunner.gnm1.ann1.NHHR58 Arachis hypogaea HOM05D005152 ORTHO05D006162 5.6e-92 342.8 658 36.6
Aqoxy1G00386 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 7.3e-92 342.4 670 34.5
FAN08G2618 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.2e-91 341.7 661 34.5
Gohir.D03G176100 Gossypium hirsutum HOM05D005152 ORTHO05D006162 1.2e-91 341.7 636 37.7
TWI75G0576 Tripterygium wilfordii HOM05D005152 ORTHO05D006162 6.2e-91 339.3 664 36.1
FAN04G0382 Fragaria x ananassa HOM05D005152 ORTHO05D006162 8.1e-91 339.0 667 35.4
Cfa009894 Carpinus fangiana HOM05D005152 ORTHO05D006162 1.8e-90 337.8 664 37.0
MELO3C014552.2 Cucumis melo HOM05D005152 ORTHO05D006162 1.8e-90 337.8 652 39.1
Aqoxy7G02965 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 4.0e-90 336.7 660 35.0
CsaV3_6G038870 Cucumis sativus L. HOM05D005152 ORTHO05D006162 4.0e-90 336.7 654 38.7
PSO384G2750 Papaver somniferum HOM05D005152 ORTHO05D006162 4.0e-90 336.7 644 36.3
Hund07432 Selenicereus undatus HOM05D005152 ORTHO05D006162 4.0e-90 336.7 669 36.5
Gorai.003G185300 Gossypium raimondii HOM05D005152 ORTHO05D006162 6.8e-90 335.9 637 37.8
ClCG02G022750 Citrullus lanatus HOM05D005152 ORTHO05D006162 3.4e-89 333.6 662 37.9
HanXRQChr14g0432261 Helianthus annuus HOM05D005152 ORTHO05D006162 3.4e-89 333.6 626 35.3
Phvul.008G202300 Phaseolus vulgaris HOM05D005152 ORTHO05D006162 3.4e-89 333.6 657 36.2
TAR636G3031 Trochodendron aralioides HOM05D005152 ORTHO05D006162 4.4e-89 333.2 491 42.8
Psat2g020920 Pisum sativum HOM05D005152 ORTHO05D006162 5.8e-89 332.8 645 37.1
CANSAT11G0534 Cannabis sativa HOM05D005152 ORTHO05D006162 7.6e-89 332.4 544 40.1
Migut.A00480 Erythranthe guttata HOM05D005152 ORTHO05D006162 9.9e-89 332.0 642 36.4
Potri.009G067800 Populus trichocarpa HOM05D005152 ORTHO05D006162 2.9e-88 330.5 643 35.8
Gohir.A03G000034 Gossypium hirsutum HOM05D005152 ORTHO05D006162 3.8e-88 330.1 638 36.4
Sed0006572 Sechium edule HOM05D005152 ORTHO05D006162 6.4e-88 329.3 660 37.1
Glyma.02G278500 Glycine max HOM05D005152 ORTHO05D006162 3.2e-87 327.0 653 35.2
COL.COLO4_16941 Corchorus olitorius HOM05D005152 ORTHO05D006162 4.2e-87 326.6 636 34.9
Glyma.14G036100 Glycine max HOM05D005152 ORTHO05D006162 1.2e-86 325.1 650 36.5
Potri.001G273600 Populus trichocarpa HOM05D005152 ORTHO05D006162 4.6e-86 323.2 642 35.8
DCAR_002098 Daucus carota HOM05D005152 ORTHO05D006162 7.8e-86 322.4 628 36.5
Medtr5g089190 Medicago truncatula HOM05D005152 ORTHO05D006162 1.1e-84 318.5 631 36.8
TPR.G16391 Trifolium pratense HOM05D005152 ORTHO05D006162 4.3e-84 316.6 630 36.7
ECA238G0396 Erigeron canadensis HOM05D005152 ORTHO05D006162 3.6e-83 313.5 643 33.7
Manes.02G136600 Manihot esculenta HOM05D005152 ORTHO05D006162 6.2e-83 312.8 635 35.4
VMungo0647G0059 Vigna mungo HOM05D005152 ORTHO05D006162 6.2e-83 312.8 657 35.0
EL10Ac4g10101 Beta vulgaris HOM05D005152 ORTHO05D006162 1.8e-82 311.2 667 35.8
Duzib205G1611 Durio zibethinus HOM05D005152 ORTHO05D006162 4.0e-82 310.1 659 34.4
AUR62006555 Chenopodium quinoa HOM05D005152 ORTHO05D006162 1.2e-81 308.5 651 35.3
Os12g0189900 Oryza sativa ssp. japonica HOM05D005152 ORTHO05D006162 1.3e-80 305.1 638 36.1
Sabra09G0050800 Salix brachista HOM05D005152 ORTHO05D006162 3.8e-80 303.5 691 33.9
AUR62000209 Chenopodium quinoa HOM05D005152 ORTHO05D006162 6.4e-80 302.8 651 35.2
SEGI_04037 Sequoiadendron giganteum HOM05D005152 ORTHO05D006162 6.4e-80 302.8 581 36.3
FAN18G0878 Fragaria x ananassa HOM05D005152 ORTHO05D006162 1.9e-79 301.2 710 32.1
Zm00001eb150380 Zea mays HOM05D005152 ORTHO05D006162 2.4e-79 300.8 629 35.8
HPP92_019896 Vanilla planifolia HOM05D005152 ORTHO05D006162 1.2e-78 298.5 613 33.9
Sc09g0005710 Simmondsia chinensis HOM05D005152 ORTHO05D006162 3.5e-78 297.0 685 34.5
Prupe.3G132200 Prunus persica HOM05D005152 ORTHO05D006162 5.1e-77 293.1 425 43.3
CDE04G1157 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 1.5e-76 291.6 646 32.5
THA.LOC104799141 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.8e-75 287.3 639 34.1
Thhalv10012989m.g Eutrema salsugineum HOM05D005152 ORTHO05D006162 3.6e-75 287.0 636 34.0
Cc02_g30140 Coffea canephora HOM05D005152 ORTHO05D006162 6.2e-75 286.2 338 48.5
Rhsim13G0207600 Rhododendron simsii HOM05D005152 ORTHO05D006162 8.1e-75 285.8 331 48.0
THA.LOC104816332 Tarenaya hassleriana HOM05D005152 ORTHO05D006162 2.0e-73 281.2 644 34.8
Oeu046802.1 Olea europaea HOM05D005152 ORTHO05D006162 2.6e-73 280.8 557 37.5
GSVIVG01029300001 Vitis vinifera HOM05D005152 ORTHO05D006162 2.6e-73 280.8 573 37.7
Carub.0006s1072 Capsella rubella HOM05D005152 ORTHO05D006162 7.6e-73 279.3 643 32.7
Aa31LG3G15010 Aethionema arabicum HOM05D005152 ORTHO05D006162 3.8e-72 276.9 636 33.6
Sp6g31420 Schrenkiella parvula HOM05D005152 ORTHO05D006162 1.2e-70 271.9 639 33.3
AT5G12220 Arabidopsis thaliana HOM05D005152 ORTHO05D006162 3.5e-70 270.4 644 31.7
Nitab4.5_0000975g0020 Nicotiana tabacum HOM05D005152 ORTHO05D006162 3.0e-69 267.3 637 32.2
PGR119G0699 Punica granatum HOM05D005152 ORTHO05D006162 3.9e-69 266.9 515 35.5
CiPaw.14G111400 Carya illinoinensis HOM05D005152 ORTHO05D006162 1.9e-68 264.6 556 36.7
MD08G1241200 Malus domestica HOM05D005152 ORTHO05D006162 9.6e-68 262.3 347 42.9
BraA03t09884Z Brassica rapa HOM05D005152 ORTHO05D006162 2.8e-67 260.8 638 30.9
AL6G23010 Arabidopsis lyrata HOM05D005152 ORTHO05D006162 8.1e-67 259.2 645 31.3
CDE07G1900 Ceratophyllum demersum HOM05D005152 ORTHO05D006162 8.1e-67 259.2 438 38.1
CARHR200900 Cardamine hirsuta HOM05D005152 ORTHO05D006162 4.0e-66 256.9 642 31.6
A03p05460 Brassica napus HOM05D005152 ORTHO05D006162 5.8e-65 253.1 638 30.4
BolC3t13143H Brassica oleracea HOM05D005152 ORTHO05D006162 7.6e-65 252.7 639 30.4
BcaB01g05418 Brassica carinata HOM05D005152 ORTHO05D006162 1.0e-64 252.3 642 31.0
C03p06370 Brassica napus HOM05D005152 ORTHO05D006162 1.7e-64 251.5 638 30.3
unitig_748.g8148 Utricularia gibba HOM05D005152 ORTHO05D006162 1.8e-58 231.5 589 32.1
Dinv36154 Davidia involucrata HOM05D005152 ORTHO05D006162 8.7e-53 212.6 516 33.7
Oeu022376.1 Olea europaea HOM05D005152 ORTHO05D006162 2.2e-51 208.0 570 32.6
Atru.chr11.1399 Acer truncatum HOM05D005152 ORTHO05D006162 3.7e-51 207.2 223 48.9
TAR633G1644 Trochodendron aralioides HOM05D005152 ORTHO05D006162 6.3e-51 206.5 151 66.2
Pp3c25_13080 Physcomitrium patens HOM05D005152 ORTHO05D006162 3.1e-42 177.6 409 28.9
Pp3c5_25710 Physcomitrium patens HOM05D005152 ORTHO05D006162 1.2e-41 175.6 561 27.1
SMO361G0105 Selaginella moellendorffii HOM05D005152 ORTHO05D006162 8.5e-40 169.5 553 26.0
Sc09g0005740 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.5e-39 167.9 155 50.3
AagrBONN_evm.TU.Sc2ySwM_228.1465 Anthoceros agrestis HOM05D005152 ORTHO05D006162 3.2e-39 167.5 445 28.1
Mapoly0027s0150 Marchantia polymorpha HOM05D005152 ORTHO05D006162 4.7e-38 163.7 175 46.9
SGA_v2.0_scaffold96G29125 Striga asiatica HOM05D005152 ORTHO05D006162 2.5e-31 141.4 130 51.5
Sc09g0005650 Simmondsia chinensis HOM05D005152 ORTHO05D006162 4.0e-29 134.0 276 34.4
Atru.chr11.1591 Acer truncatum HOM05D005152 ORTHO05D006162 7.5e-28 129.8 426 30.0
MCO05G618 Micromonas commoda HOM05D005152 ORTHO05D006162 1.3e-27 129.0 186 38.7
CAN.G437.19 Capsicum annuum HOM05D005152 ORTHO05D006162 9.1e-26 122.9 106 57.5
SGA_v2.0_scaffold79G25574 Striga asiatica HOM05D005152 ORTHO05D006162 3.2e-23 114.4 97 54.6
Cpa.g.c26789.2 Carica papaya HOM05D005152 ORTHO05D006162 8.0e-22 109.8 430 27.7
Rhsim13G0207500 Rhododendron simsii HOM05D005152 ORTHO05D006162 2.3e-21 108.2 301 31.2
Oeu046803.1 Olea europaea HOM05D005152 ORTHO05D006162 1.4e-18 99.0 80 52.5
Cre01.g002201 Chlamydomonas reinhardtii HOM05D005152 ORTHO05D006162 2.4e-18 98.2 243 27.2
GSVIVG01029301001 Vitis vinifera HOM05D005152 ORTHO05D006162 3.5e-17 94.4 70 58.6
Sc09g0005660 Simmondsia chinensis HOM05D005152 ORTHO05D006162 1.5e-15 89.0 65 58.5
A02p39210 Brassica napus HOM05D005152 ORTHO05D006162 2.7e-14 84.7 369 25.2
Sc09g0005720 Simmondsia chinensis HOM05D005152 ORTHO05D006162 2.6e-12 78.2 68 51.5
Aqoxy4G01955 Aquilegia oxysepala HOM05D005152 ORTHO05D006162 5.7e-12 77.0 67 59.7
MD08G1241100 Malus domestica HOM05D005152 ORTHO05D006162 1.3e-11 75.9 241 28.6
Atru.chr10.529 Acer truncatum HOM05D005152 ORTHO05D006162 1.7e-11 75.5 410 26.6
CBR_g41105 Chara braunii HOM05D001740 ORTHO05D001468 9.2e-10 69.7 145 30.3
Atru.chr11.1397 Acer truncatum HOM05D005152 ORTHO05D006162 1.2e-09 69.3 194 30.9
Hma1.2p1_0460F.1_g157490 Hydrangea macrophylla HOM05D005152 ORTHO05D006162 1.6e-09 68.9 186 29.6
Hund07429 Selenicereus undatus HOM05D005152 ORTHO05D006162 1.0e-08 66.2 104 34.6
Sabra16G0168500 Salix brachista HOM05D005152 ORTHO05D006162 6.6e-08 63.5 374 27.8
Sc09g0005670 Simmondsia chinensis HOM05D005152 ORTHO05D006162 6.6e-08 63.5 137 28.5
Cfa025982 Carpinus fangiana HOM05D005152 ORTHO05D006162 4.7e-06 57.4 124 25.8


User provided reference genes

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