Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 1.1e-65 253.1 125 100.0
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 3.1e-10 68.9 91 53.8
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 5.2e-10 68.2 44 81.8
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 3.4e-09 65.5 51 70.6
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.4e-09 65.1 51 70.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 7.5e-09 64.3 50 72.0
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.3e-08 63.5 49 73.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.7e-08 63.2 84 53.6
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.7e-08 63.2 48 66.7
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.7e-08 63.2 56 64.3
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.7e-08 63.2 52 63.5
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.9e-08 62.4 59 62.7
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 3.7e-08 62.0 54 66.7
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 4.9e-08 61.6 49 71.4
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 4.9e-08 61.6 49 71.4
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 4.9e-08 61.6 52 63.5
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 4.9e-08 61.6 65 60.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 6.4e-08 61.2 52 65.4
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 8.3e-08 60.8 54 66.7
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 1.1e-07 60.5 65 60.0
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.1e-07 60.5 52 69.2
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 1.4e-07 60.1 54 66.7
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 1.4e-07 60.1 67 55.2
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.4e-07 60.1 52 63.5
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.9e-07 59.7 49 67.3
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.9e-07 59.7 62 61.3
Manes.08G137100 Manihot esculenta HOM05D011447 ORTHO05D010069 1.9e-07 59.7 58 58.6
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 1.9e-07 59.7 46 71.7
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 2.4e-07 59.3 57 63.2
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-07 59.3 59 62.7
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 3.2e-07 58.9 107 42.1
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 3.2e-07 58.9 55 65.5
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.1e-07 58.5 59 55.9
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.1e-07 58.5 68 57.4
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 4.1e-07 58.5 54 63.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 4.1e-07 58.5 51 66.7
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 4.1e-07 58.5 51 66.7
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 4.1e-07 58.5 54 61.1
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 5.4e-07 58.2 48 64.6
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 5.4e-07 58.2 68 58.8
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 5.4e-07 58.2 52 61.5
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.4e-07 58.2 68 58.8
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 5.4e-07 58.2 52 61.5
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 5.4e-07 58.2 58 62.1
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 5.4e-07 58.2 52 67.3
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 7.1e-07 57.8 59 62.7
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 7.1e-07 57.8 46 69.6
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 9.2e-07 57.4 62 58.1
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 9.2e-07 57.4 52 65.4
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 9.2e-07 57.4 58 60.3
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 9.2e-07 57.4 45 71.1
Sabra19G0026400 Salix brachista HOM05D011447 ORTHO05D010069 9.2e-07 57.4 50 60.0
TAR633G0725 Trochodendron aralioides HOM05D001496 ORTHO05D007453 9.2e-07 57.4 105 37.1
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.2e-06 57.0 49 63.3
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.2e-06 57.0 49 63.3
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 1.2e-06 57.0 45 64.4
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 1.2e-06 57.0 51 56.9
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 1.2e-06 57.0 51 56.9
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.2e-06 57.0 63 58.7
BcaC02g09866 Brassica carinata HOM05D002974 ORTHO05D002992 1.6e-06 56.6 138 37.0
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.6e-06 56.6 54 61.1
CDE09G1110 Ceratophyllum demersum HOM05D002974 ORTHO05D002992 1.6e-06 56.6 49 61.2
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.6e-06 56.6 53 60.4
Sabra19G0016700 Salix brachista HOM05D011447 ORTHO05D010069 1.6e-06 56.6 50 60.0
Sabra19G0016800 Salix brachista HOM05D001365 ORTHO05D010069 1.6e-06 56.6 50 60.0
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 2.1e-06 56.2 130 37.7
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.1e-06 56.2 43 67.4
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.1e-06 56.2 53 60.4
Sabra19G0016900 Salix brachista HOM05D011447 ORTHO05D010069 2.1e-06 56.2 86 41.9
Sabra19G0026300 Salix brachista HOM05D011447 ORTHO05D010069 2.1e-06 56.2 86 41.9
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.1e-06 56.2 49 65.3
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.7e-06 55.8 54 61.1
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 2.7e-06 55.8 46 67.4
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 2.7e-06 55.8 51 60.8
SGA_v2.0_scaffold69G23150 Striga asiatica HOM05D002974 ORTHO05D002992 2.7e-06 55.8 52 61.5
Cpa.g.sc162.8 Carica papaya HOM05D009218 ORTHO05D010069 3.5e-06 55.5 45 66.7
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.5e-06 55.5 44 70.5
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 3.5e-06 55.5 38 78.9
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.5e-06 55.5 54 61.1
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.5e-06 55.5 54 61.1
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 3.5e-06 55.5 39 76.9
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 4.6e-06 55.1 63 55.6
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 4.6e-06 55.1 49 63.3
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 4.6e-06 55.1 68 57.4
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 4.6e-06 55.1 53 60.4
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.0e-06 54.7 78 48.7
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 6.0e-06 54.7 52 61.5
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 7.8e-06 54.3 54 59.3
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 7.8e-06 54.3 44 63.6


User provided reference genes

Program Settings