Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 4.0e-162 574.7 291 100.0
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 4.0e-77 292.4 201 71.6
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 5.2e-77 292.0 254 61.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.3e-75 287.3 262 59.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.2e-75 286.6 204 70.6
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 2.8e-75 286.2 235 63.0
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.8e-75 286.2 242 62.8
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 3.7e-75 285.8 204 70.6
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 4.8e-75 285.4 235 62.6
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 4.8e-75 285.4 233 63.5
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.1e-74 284.3 201 70.1
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.4e-74 283.9 252 60.3
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.4e-74 283.9 263 59.3
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 3.1e-74 282.7 236 61.4
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 4.1e-74 282.3 203 70.0
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 7.0e-74 281.6 213 67.6
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 7.0e-74 281.6 202 67.8
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 9.1e-74 281.2 236 60.6
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 9.1e-74 281.2 274 57.7
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.2e-73 280.8 206 68.9
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 2.0e-73 280.0 202 68.3
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 4.5e-73 278.9 236 59.7
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.5e-73 278.9 199 69.3
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 4.5e-73 278.9 206 68.9
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 4.5e-73 278.9 204 69.1
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.5e-73 278.9 205 69.3
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 4.5e-73 278.9 205 69.3
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 5.9e-73 278.5 204 68.1
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 5.9e-73 278.5 205 67.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 5.9e-73 278.5 230 63.9
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 5.9e-73 278.5 239 61.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 5.9e-73 278.5 239 61.9
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 7.7e-73 278.1 201 69.7
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 1.0e-72 277.7 199 69.3
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.3e-72 277.3 202 67.3
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.3e-72 277.3 264 58.7
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 1.3e-72 277.3 205 68.3
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 2.3e-72 276.6 199 68.8
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 2.3e-72 276.6 199 68.8
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 2.3e-72 276.6 205 67.3
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.3e-72 276.6 205 67.3
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.3e-72 276.6 223 61.9
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.9e-72 276.2 202 68.3
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 3.8e-72 275.8 204 68.6
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 3.8e-72 275.8 204 68.6
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.6e-72 275.0 201 69.7
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 6.6e-72 275.0 274 56.2
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 8.6e-72 274.6 256 58.6
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 8.6e-72 274.6 256 59.0
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 8.6e-72 274.6 256 59.0
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 8.6e-72 274.6 278 56.5
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 1.1e-71 274.2 228 64.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 1.1e-71 274.2 254 58.7
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.5e-71 273.9 202 68.3
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 1.9e-71 273.5 201 68.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.9e-71 273.5 205 67.3
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.9e-71 273.5 205 67.3
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.9e-71 273.5 200 67.5
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 1.9e-71 273.5 266 57.5
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 2.5e-71 273.1 204 68.1
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.3e-71 272.7 205 66.8
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.2e-71 272.3 205 66.8
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.2e-71 272.3 207 66.7
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.2e-71 272.3 265 56.6
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 5.5e-71 271.9 264 58.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 5.5e-71 271.9 265 56.6
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 5.5e-71 271.9 214 65.0
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 5.5e-71 271.9 280 55.7
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 7.2e-71 271.6 224 62.9
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 7.2e-71 271.6 201 68.7
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 7.2e-71 271.6 266 57.1
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 9.5e-71 271.2 261 57.1
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 9.5e-71 271.2 254 60.2
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-70 270.8 256 58.2
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 1.2e-70 270.8 262 57.6
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 2.8e-70 269.6 204 67.2
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.8e-70 269.6 287 56.4
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.6e-70 269.2 201 66.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 4.7e-70 268.9 193 69.4
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 6.1e-70 268.5 276 55.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 8.0e-70 268.1 193 69.4
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.0e-69 267.7 275 56.0
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.4e-69 267.3 276 54.7
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.4e-69 267.3 191 68.6
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 1.8e-69 266.9 255 55.3
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 3.0e-69 266.2 260 57.3
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 4.0e-69 265.8 201 66.7
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 6.8e-69 265.0 266 55.3
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 8.9e-69 264.6 217 62.2
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-68 263.8 217 61.8
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.5e-68 263.8 218 61.9
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 2.0e-68 263.5 243 58.8
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 2.0e-68 263.5 239 56.9
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-68 263.5 217 61.3
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.6e-68 263.1 201 66.2
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 9.8e-68 261.2 197 64.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-67 260.8 253 57.3
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 4.9e-67 258.8 295 50.2
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 4.9e-67 258.8 197 63.5
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 8.3e-67 258.1 257 55.6
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 1.1e-66 257.7 201 62.7
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 1.4e-66 257.3 197 62.9
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.8e-66 256.9 193 68.4
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 5.4e-66 255.4 193 67.4
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 9.2e-66 254.6 193 66.3
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 1.6e-65 253.8 273 51.3
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.9e-65 251.9 279 51.6
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 7.8e-65 251.5 228 58.8
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.9e-63 246.9 177 70.1
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 2.5e-63 246.5 189 65.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 3.3e-63 246.1 272 50.7
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 1.6e-62 243.8 194 64.4
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 8.0e-62 241.5 177 70.1
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.0e-61 241.1 185 65.4
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 4.4e-60 235.7 194 62.9
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 5.8e-60 235.3 220 57.7
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 6.4e-59 231.9 176 68.2
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 3.2e-58 229.6 212 54.7
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 3.2e-58 229.6 207 56.0
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 7.0e-58 228.4 167 70.1
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.6e-57 227.3 179 64.2
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 1.0e-56 224.6 184 62.5
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 6.6e-56 221.9 269 46.8
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 8.6e-56 221.5 177 63.3
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.1e-55 221.1 177 61.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.2e-53 212.2 201 57.7
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 9.2e-50 201.4 165 62.4
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 9.2e-50 201.4 165 62.4
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 1.6e-49 200.7 201 54.7
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 3.6e-46 189.5 188 56.4
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.8e-45 187.2 206 52.9
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.7e-43 180.6 196 47.4
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.9e-43 179.9 168 54.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 8.3e-43 178.3 131 67.2
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-42 177.9 177 55.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.1e-39 167.9 205 49.8
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 3.6e-38 162.9 106 73.6
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.6e-33 147.5 106 67.0
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 9.0e-29 131.7 232 42.2
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 5.8e-28 129.0 85 70.6
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.2e-27 127.1 88 65.9
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.4e-27 125.6 203 38.4
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 2.7e-25 120.2 156 42.9
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 1.7e-24 117.5 236 34.7
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.1e-23 114.8 196 39.3
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 4.3e-23 112.8 208 32.7
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 8.4e-19 98.6 70 67.1
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 1.2e-17 94.7 75 64.0
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 3.0e-16 90.1 162 43.8
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 7.4e-15 85.5 59 66.1
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 3.7e-14 83.2 120 41.7
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 1.7e-11 74.3 111 42.3
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.3e-08 64.7 65 55.4
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 4.3e-07 59.7 36 75.0
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 6.2e-06 55.8 65 49.2


User provided reference genes

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