Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G048 Amborella trichopoda HOM05D005755 ORTHO05D007006 5.0e-54 214.2 106 100.0
Cpa.g.sc53.20 Carica papaya HOM05D005755 ORTHO05D007006 3.8e-38 161.4 106 72.6
TAR381G1573 Trochodendron aralioides HOM05D005755 ORTHO05D007006 1.1e-37 159.8 106 71.7
HPP92_016041 Vanilla planifolia HOM05D005755 ORTHO05D007006 1.5e-37 159.5 106 68.9
Ciclev10033129m.g Citrus clementina HOM05D005755 ORTHO05D007006 7.3e-37 157.1 106 71.7
FAN10G3796 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.6e-36 156.0 106 69.8
Eucgr.G02800 Eucalyptus grandis HOM05D005755 ORTHO05D007006 4.7e-36 154.5 106 67.9
Nn5g30302 Nelumbo nucifera HOM05D005755 ORTHO05D007006 4.7e-36 154.5 106 69.8
FvH4_7g20160 Fragaria vesca HOM05D005755 ORTHO05D007006 8.0e-36 153.7 106 68.9
MBI19_g25006_MAGBIO Magnolia biondii HOM05D005755 ORTHO05D007006 1.4e-35 152.9 106 70.8
FAN01G0677 Fragaria x ananassa HOM05D005755 ORTHO05D007006 1.8e-35 152.5 106 69.8
Manes.10G042600 Manihot esculenta HOM05D005755 ORTHO05D007006 1.8e-35 152.5 104 71.2
Prupe.2G218600 Prunus persica HOM05D005755 ORTHO05D007006 1.8e-35 152.5 106 66.0
Thecc.10G068000 Theobroma cacao HOM05D005755 ORTHO05D007006 1.8e-35 152.5 106 68.9
Atru.chr12.636 Acer truncatum HOM05D005755 ORTHO05D007006 3.0e-35 151.8 104 70.2
Dinv04676 Davidia involucrata HOM05D005755 ORTHO05D007006 3.0e-35 151.8 106 67.0
RcHm_v2.0_Chr1g0364121 Rosa chinensis HOM05D005755 ORTHO05D007006 3.0e-35 151.8 106 66.0
Dinv11808 Davidia involucrata HOM05D005755 ORTHO05D007006 4.0e-35 151.4 106 66.0
Duzib106G1131 Durio zibethinus HOM05D005755 ORTHO05D007006 5.2e-35 151.0 106 67.9
Sc05g0001890 Simmondsia chinensis HOM05D005755 ORTHO05D007006 6.8e-35 150.6 106 65.1
Hund18453 Selenicereus undatus HOM05D005755 ORTHO05D007006 1.2e-34 149.8 108 67.6
Glyma.08G121800 Glycine max HOM05D005755 ORTHO05D007006 2.6e-34 148.7 100 73.0
Ca_19066_v3 Cicer arietinum L. HOM05D005755 ORTHO05D007006 3.4e-34 148.3 103 66.0
PGR142G0594 Punica granatum HOM05D005755 ORTHO05D007006 3.4e-34 148.3 104 68.3
TPR.G12499 Trifolium pratense HOM05D005755 ORTHO05D007006 3.4e-34 148.3 98 70.4
Aqoxy3G01116 Aquilegia oxysepala HOM05D005755 ORTHO05D007006 4.4e-34 147.9 103 67.0
Glyma.05G164400 Glycine max HOM05D005755 ORTHO05D007006 4.4e-34 147.9 100 72.0
MD01G1131200 Malus domestica HOM05D005755 ORTHO05D007006 4.4e-34 147.9 106 66.0
Potri.008G044200 Populus trichocarpa HOM05D005755 ORTHO05D007006 4.4e-34 147.9 106 64.2
FAN06G3582 Fragaria x ananassa HOM05D005755 ORTHO05D007006 5.7e-34 147.5 104 65.4
Hma1.2p1_0157F.1_g068960 Hydrangea macrophylla HOM05D005755 ORTHO05D007006 5.7e-34 147.5 106 68.9
vmacro04890 Vaccinium macrocarpon HOM05D005755 ORTHO05D007006 7.5e-34 147.1 104 68.3
Gohir.A01G133200 Gossypium hirsutum HOM05D005755 ORTHO05D007006 9.8e-34 146.7 106 65.1
Gorai.002G143500 Gossypium raimondii HOM05D005755 ORTHO05D007006 9.8e-34 146.7 106 65.1
QL08p056843 Quercus lobata HOM05D005755 ORTHO05D007006 9.8e-34 146.7 105 65.7
EL10Ac3g06003 Beta vulgaris HOM05D005755 ORTHO05D007006 1.3e-33 146.4 104 63.5
MD07G1179300 Malus domestica HOM05D005755 ORTHO05D007006 1.3e-33 146.4 106 64.2
Medtr6g068850 Medicago truncatula HOM05D005755 ORTHO05D007006 1.3e-33 146.4 103 64.1
Peaxi162Scf00373g00210 Petunia axillaris HOM05D005755 ORTHO05D007006 2.9e-33 145.2 104 69.2
CiPaw.15G145100 Carya illinoinensis HOM05D005755 ORTHO05D007006 4.9e-33 144.4 106 66.0
CDE10G1261 Ceratophyllum demersum HOM05D005755 ORTHO05D007006 4.9e-33 144.4 100 68.0
AUR62037483 Chenopodium quinoa HOM05D005755 ORTHO05D007006 4.9e-33 144.4 104 63.5
Ah.04g160050 Amaranthus hybridus HOM05D005755 ORTHO05D007006 6.4e-33 144.1 102 61.8
EL10Ac7g15953 Beta vulgaris HOM05D005755 ORTHO05D007006 6.4e-33 144.1 104 62.5
CANSAT11G0923 Cannabis sativa HOM05D005755 ORTHO05D007006 6.4e-33 144.1 100 69.0
FAN03G2322 Fragaria x ananassa HOM05D005755 ORTHO05D007006 6.4e-33 144.1 101 66.3
Phvul.002G244400 Phaseolus vulgaris HOM05D005755 ORTHO05D007006 8.3e-33 143.7 100 68.0
AUR62004768 Chenopodium quinoa HOM05D005755 ORTHO05D007006 1.1e-32 143.3 104 63.5
EL10Ac7g17935 Beta vulgaris HOM05D005755 ORTHO05D007006 1.4e-32 142.9 97 67.0
Peaxi162Scf00111g00718 Petunia axillaris HOM05D005755 ORTHO05D007006 1.4e-32 142.9 105 67.6
Sed0018161 Sechium edule HOM05D005755 ORTHO05D007006 1.4e-32 142.9 106 62.3
Lalb_Chr07g0186081 Lupinus albus HOM05D005755 ORTHO05D007006 1.8e-32 142.5 102 67.6
TWI15G0398 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.8e-32 142.5 104 64.4
Actinidia38859 Actinidia chinensis HOM05D005755 ORTHO05D007006 2.4e-32 142.1 106 64.2
Lj4g0006534 Lotus japonicus HOM05D005755 ORTHO05D007006 2.4e-32 142.1 105 65.7
GSVIVG01016339001 Vitis vinifera HOM05D005755 ORTHO05D007006 2.4e-32 142.1 106 63.2
EL10Ac6g13227 Beta vulgaris HOM05D005755 ORTHO05D007006 3.2e-32 141.7 104 61.5
Cfa019629 Carpinus fangiana HOM05D005755 ORTHO05D007006 3.2e-32 141.7 104 64.4
CsaV3_3G030820 Cucumis sativus L. HOM05D005755 ORTHO05D007006 3.2e-32 141.7 106 64.2
SEGI_41538 Sequoiadendron giganteum HOM05D005755 ORTHO05D007006 4.1e-32 141.4 104 62.5
Cc00_g19060 Coffea canephora HOM05D005755 ORTHO05D007006 5.4e-32 141.0 107 68.2
DCAR_015273 Daucus carota HOM05D005755 ORTHO05D007006 5.4e-32 141.0 106 63.2
Duzib114G0063 Durio zibethinus HOM05D005755 ORTHO05D007006 5.4e-32 141.0 104 64.4
Sabra08G0030600 Salix brachista HOM05D005755 ORTHO05D007006 7.0e-32 140.6 104 60.6
THA.LOC104799357 Tarenaya hassleriana HOM05D005755 ORTHO05D007006 1.2e-31 139.8 106 64.2
Psat1g119080 Pisum sativum HOM05D005755 ORTHO05D007006 1.6e-31 139.4 98 65.3
Lsat_1_v5_gn_2_46180 Lactuca sativa HOM05D005755 ORTHO05D007006 2.0e-31 139.0 105 65.7
PSO675G6920 Papaver somniferum HOM05D005755 ORTHO05D007006 2.0e-31 139.0 104 60.6
Gohir.D01G118000 Gossypium hirsutum HOM05D005755 ORTHO05D007006 7.8e-31 137.1 124 56.5
ECA238G0308 Erigeron canadensis HOM05D005755 ORTHO05D007006 1.3e-30 136.3 104 64.4
TWI38G1562 Tripterygium wilfordii HOM05D005755 ORTHO05D007006 1.7e-30 136.0 103 64.1
EL10Ac5g11654 Beta vulgaris HOM05D005755 ORTHO05D007006 2.3e-30 135.6 96 64.6
CSS0044562 Camellia sinensis var. sinensis HOM05D005755 ORTHO05D007006 3.0e-30 135.2 104 62.5
Sopen04g020610 Solanum pennellii HOM05D005755 ORTHO05D007006 3.9e-30 134.8 101 64.4
Nitab4.5_0001721g0080 Nicotiana tabacum HOM05D005755 ORTHO05D007006 5.0e-30 134.4 104 62.5
Potri.010G217300 Populus trichocarpa HOM05D005755 ORTHO05D007006 5.0e-30 134.4 104 58.7
VMungo0251G2378 Vigna mungo HOM05D001210 ORTHO05D001036 5.0e-30 134.4 95 68.4
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 6.6e-30 134.0 106 64.2
CAN.G79.77 Capsicum annuum HOM05D005755 ORTHO05D007006 1.1e-29 133.3 106 60.4
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 1.5e-29 132.9 129 55.0
Solyc04g049970.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 1.5e-29 132.9 100 64.0
Nitab4.5_0000061g0170 Nicotiana tabacum HOM05D005755 ORTHO05D007006 1.9e-29 132.5 101 63.4
MSTRG.8164 Avicennia marina HOM05D005755 ORTHO05D007006 3.3e-29 131.7 100 66.0
PGSC0003DMG400022164 Solanum tuberosum HOM05D005755 ORTHO05D007006 1.2e-28 129.8 104 60.6
CARHR264900 Cardamine hirsuta HOM05D005755 ORTHO05D007006 1.6e-28 129.4 104 64.4
Sp6g14210 Schrenkiella parvula HOM05D005755 ORTHO05D007006 3.6e-28 128.3 104 62.5
Oeu057236.1 Olea europaea HOM05D005755 ORTHO05D007006 4.7e-28 127.9 100 64.0
Sopen07g033930 Solanum pennellii HOM05D005755 ORTHO05D007006 4.7e-28 127.9 104 59.6
Zm00001eb235420 Zea mays HOM05D005755 ORTHO05D007006 4.7e-28 127.9 104 59.6
Thhalv10015092m.g Eutrema salsugineum HOM05D005755 ORTHO05D007006 6.2e-28 127.5 104 61.5
Solyc07g065720.4 Solanum lycopersicum HOM05D005755 ORTHO05D007006 8.0e-28 127.1 103 60.2
Aa31LG7G12880 Aethionema arabicum HOM05D005755 ORTHO05D007006 1.4e-27 126.3 103 59.2
AT5G51960 Arabidopsis thaliana HOM05D005755 ORTHO05D007006 1.8e-27 125.9 104 60.6
arahy.Tifrunner.gnm1.ann1.FL0JYU Arachis hypogaea HOM05D005755 ORTHO05D007006 3.1e-27 125.2 102 59.8
arahy.Tifrunner.gnm1.ann1.QA5RE0 Arachis hypogaea HOM05D005755 ORTHO05D007006 3.1e-27 125.2 102 59.8
SalBow1G5334 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.1e-27 125.2 102 59.8
SalBow1G7067 Salvia bowleyana HOM05D005755 ORTHO05D007006 3.1e-27 125.2 102 59.8
Oeu017232.1 Olea europaea HOM05D005755 ORTHO05D007006 6.8e-27 124.0 98 63.3
Os11g0133900 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 6.8e-27 124.0 98 60.2
SalBow3G2244 Salvia bowleyana HOM05D005755 ORTHO05D007006 8.9e-27 123.6 102 58.8
SalBow3G3619 Salvia bowleyana HOM05D005755 ORTHO05D007006 8.9e-27 123.6 102 58.8
BcaB08g35550 Brassica carinata HOM05D005755 ORTHO05D007006 1.5e-26 122.9 105 59.0
AL8G32330 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.0e-26 122.5 104 59.6
BcaC03g14561 Brassica carinata HOM05D005755 ORTHO05D007006 2.0e-26 122.5 104 60.6
C02p20090 Brassica napus HOM05D005755 ORTHO05D007006 2.0e-26 122.5 104 60.6
Migut.F01798 Erythranthe guttata HOM05D005755 ORTHO05D007006 2.0e-26 122.5 101 63.4
BolC2t08139H Brassica oleracea HOM05D005755 ORTHO05D007006 2.6e-26 122.1 104 59.6
BraA02t06267Z Brassica rapa HOM05D005755 ORTHO05D007006 2.6e-26 122.1 104 60.6
Carub.0008s1205 Capsella rubella HOM05D005755 ORTHO05D007006 2.6e-26 122.1 102 60.8
BcaB05g23952 Brassica carinata HOM05D005755 ORTHO05D007006 7.5e-26 120.6 104 58.7
A10p09750 Brassica napus HOM05D005755 ORTHO05D007006 1.3e-25 119.8 105 57.1
Zm00001eb163500 Zea mays HOM05D005755 ORTHO05D007006 1.7e-25 119.4 104 55.8
AL8G26290 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 2.9e-25 118.6 102 58.8
BraA10t43055Z Brassica rapa HOM05D005755 ORTHO05D007006 3.7e-25 118.2 105 56.2
BcaC04g20616 Brassica carinata HOM05D005755 ORTHO05D007006 6.4e-25 117.5 105 56.2
C09p41470 Brassica napus HOM05D005755 ORTHO05D007006 6.4e-25 117.5 105 56.2
BolC9t57024H Brassica oleracea HOM05D005755 ORTHO05D007006 6.4e-25 117.5 105 56.2
unitig_8.g3685 Utricularia gibba HOM05D005755 ORTHO05D007006 2.4e-24 115.5 104 57.7
SMO207G0003 Selaginella moellendorffii HOM05D005755 ORTHO05D007006 7.8e-23 110.5 104 51.0
Mapoly0006s0175 Marchantia polymorpha HOM05D005755 ORTHO05D007006 1.1e-21 106.7 102 48.0
Glyma.19G087500 Glycine max HOM05D005755 ORTHO05D007006 1.9e-21 105.9 76 67.1
Os12g0131266 Oryza sativa ssp. japonica HOM05D005755 ORTHO05D007006 1.9e-21 105.9 82 62.2
SGA_v2.0_scaffold71G24037 Striga asiatica HOM05D005755 ORTHO05D007006 1.9e-21 105.9 99 54.5
AagrBONN_evm.TU.Sc2ySwM_362.2659 Anthoceros agrestis HOM05D005755 ORTHO05D007006 3.6e-20 101.7 100 48.0
TPR.G31353 Trifolium pratense HOM05D005755 ORTHO05D007006 2.2e-17 92.4 95 51.6
Haze_18895 Corylus avellana HOM05D005755 ORTHO05D007006 9.2e-16 87.0 81 53.1
Pp3c3_10790 Physcomitrium patens HOM05D005755 ORTHO05D007006 1.2e-15 86.7 98 45.9
Lj3g0006677 Lotus japonicus HOM05D005755 ORTHO05D007006 2.1e-15 85.9 68 55.9
HanXRQChr14g0436521 Helianthus annuus HOM05D005755 ORTHO05D007006 9.5e-13 77.0 68 50.0
Lj3g0023846 Lotus japonicus HOM05D005755 ORTHO05D007006 4.7e-12 74.7 67 53.7
Oeu057237.1 Olea europaea HOM05D005755 ORTHO05D007006 1.2e-10 70.1 66 51.5
SEGI_15077 Sequoiadendron giganteum HOM05D002017 ORTHO05D007006 2.0e-10 69.3 52 59.6
CBR_g23899 Chara braunii HOM05D005755 ORTHO05D007006 9.9e-10 67.0 103 38.8
AL792U10010 Arabidopsis lyrata HOM05D005755 ORTHO05D007006 1.1e-08 63.5 66 48.5
A02p12030 Brassica napus HOM05D005755 ORTHO05D007006 2.4e-08 62.4 68 47.1
Prupe.2G218400 Prunus persica HOM05D005755 ORTHO05D007006 9.2e-08 60.5 113 39.8
ClCG08G001190 Citrullus lanatus HOM05D005755 ORTHO05D007006 4.6e-07 58.2 55 47.3


User provided reference genes

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