Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G030 Amborella trichopoda HOM05D007318 ORTHO05D009289 9.1e-147 523.5 249 100.0
Nn7g37225 Nelumbo nucifera HOM05D007318 ORTHO05D009289 8.3e-84 314.3 239 58.2
Dinv09616 Davidia involucrata HOM05D007318 ORTHO05D009289 6.0e-82 308.1 236 60.6
MBI13_g32993_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.9e-81 305.4 239 59.8
MBI13_g44214_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 6.6e-81 304.7 231 61.0
Rhsim03G0098000 Rhododendron simsii HOM05D007318 ORTHO05D009289 1.1e-80 303.9 236 58.9
Actinidia18618 Actinidia chinensis HOM05D007318 ORTHO05D009289 1.5e-80 303.5 237 58.2
Atru.chr12.1022 Acer truncatum HOM05D007318 ORTHO05D009289 2.8e-79 299.3 231 60.2
Haze_02511 Corylus avellana HOM05D007318 ORTHO05D009289 4.7e-79 298.5 230 59.6
Sabra10G0186800 Salix brachista HOM05D007318 ORTHO05D009289 4.7e-79 298.5 238 57.1
Ciclev10016201m.g Citrus clementina HOM05D007318 ORTHO05D009289 6.2e-79 298.1 231 58.0
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 1.4e-78 297.0 231 58.0
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 8.9e-78 294.3 233 58.4
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 8.9e-78 294.3 231 58.0
Gohir.D02G016400 Gossypium hirsutum HOM05D007318 ORTHO05D009289 4.4e-77 292.0 231 58.9
Gorai.005G019900 Gossypium raimondii HOM05D007318 ORTHO05D009289 9.9e-77 290.8 231 58.4
GSVIVG01001002001 Vitis vinifera HOM05D007318 ORTHO05D009289 2.2e-76 289.7 239 55.6
CSS0001089 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 2.9e-76 289.3 235 57.0
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 2.9e-76 289.3 236 55.1
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 3.8e-76 288.9 231 55.0
Duzib151G0977 Durio zibethinus HOM05D007318 ORTHO05D009289 3.8e-76 288.9 229 59.0
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 8.4e-76 287.7 236 54.2
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 1.1e-75 287.3 236 54.2
CSS0042589 Camellia sinensis var. sinensis HOM05D007318 ORTHO05D009289 1.9e-75 286.6 235 57.0
Migut.F01608 Erythranthe guttata HOM05D007318 ORTHO05D009289 1.9e-75 286.6 231 55.4
Manes.03G085100 Manihot esculenta HOM05D007318 ORTHO05D009289 5.4e-75 285.0 231 56.7
MD02G1257000 Malus domestica HOM05D007318 ORTHO05D009289 2.1e-74 283.1 231 55.4
Oeu026589.2 Olea europaea HOM05D007318 ORTHO05D009289 2.1e-74 283.1 231 55.0
CAN.G645.12 Capsicum annuum HOM05D007318 ORTHO05D009289 7.8e-74 281.2 236 52.5
TWI63G0749 Tripterygium wilfordii HOM05D007318 ORTHO05D009289 7.8e-74 281.2 231 56.7
CANSAT56G0802 Cannabis sativa HOM05D007318 ORTHO05D009289 3.0e-73 279.3 249 54.2
CsaV3_5G035390 Cucumis sativus L. HOM05D007318 ORTHO05D009289 5.1e-73 278.5 230 55.7
ECA238G4459 Erigeron canadensis HOM05D007318 ORTHO05D009289 6.6e-73 278.1 229 55.9
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 8.7e-73 277.7 223 56.1
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.9e-72 276.6 233 54.1
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 2.5e-72 276.2 229 56.8
Sopen11g002850 Solanum pennellii HOM05D007318 ORTHO05D009289 3.3e-72 275.8 240 52.5
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 4.3e-72 275.4 231 55.0
HanXRQChr07g0194021 Helianthus annuus HOM05D007318 ORTHO05D009289 7.3e-72 274.6 229 55.5
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.2e-71 273.9 231 56.3
Glyma.15G117500 Glycine max HOM05D007318 ORTHO05D009289 1.2e-71 273.9 232 56.5
Lj6g0015884 Lotus japonicus HOM05D007318 ORTHO05D009289 1.6e-71 273.5 230 55.2
Cpa.g.sc5.264 Carica papaya HOM05D007318 ORTHO05D009289 2.1e-71 273.1 228 56.1
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 2.1e-71 273.1 231 56.3
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 2.1e-71 273.1 231 56.7
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 2.8e-71 272.7 231 55.8
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 2.8e-71 272.7 231 56.7
COL.COLO4_33011 Corchorus olitorius HOM05D007318 ORTHO05D009289 8.1e-71 271.2 227 55.9
SalBow6G3105 Salvia bowleyana HOM05D007318 ORTHO05D009289 1.4e-70 270.4 238 52.9
Cc02_g09660 Coffea canephora HOM05D007318 ORTHO05D009289 1.8e-70 270.0 234 52.6
PSO384G0062 Papaver somniferum HOM05D007318 ORTHO05D009289 4.0e-70 268.9 241 54.4
MELO3C012351.2 Cucumis melo HOM05D007318 ORTHO05D009289 1.2e-69 267.3 234 53.8
Hund22276 Selenicereus undatus HOM05D007318 ORTHO05D009289 1.7e-68 263.5 231 52.8
Aqoxy1G02095 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 8.4e-68 261.2 240 51.7
Aqoxy1G02117 Aquilegia oxysepala HOM05D007318 ORTHO05D009289 1.4e-67 260.4 237 52.3
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-67 259.6 231 54.5
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-67 259.6 231 54.5
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 2.4e-67 259.6 231 54.5
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.4e-67 259.6 228 51.8
Zm00001eb196200 Zea mays HOM05D007318 ORTHO05D009289 7.1e-67 258.1 229 52.8
Lsat_1_v5_gn_2_104460 Lactuca sativa HOM05D007318 ORTHO05D009289 3.9e-65 252.3 239 52.3
SGA_v2.0_scaffold13G06456 Striga asiatica HOM05D007318 ORTHO05D009289 8.7e-65 251.1 231 50.2
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.1e-63 246.5 228 49.6
EL10Ac4g08684 Beta vulgaris HOM05D007318 ORTHO05D009289 3.6e-63 245.7 232 48.7
TPR.G10614 Trifolium pratense HOM05D007318 ORTHO05D009289 1.1e-62 244.2 236 53.0
Medtr1g050425 Medicago truncatula HOM05D007318 ORTHO05D009289 2.4e-62 243.0 238 51.3
Mapoly0020s0170 Marchantia polymorpha HOM05D007318 ORTHO05D009289 5.3e-62 241.9 247 47.0
Potri.010G238500 Populus trichocarpa HOM05D007318 ORTHO05D009289 5.3e-62 241.9 183 57.9
Cfa011269 Carpinus fangiana HOM05D007318 ORTHO05D009289 1.5e-61 240.4 182 59.3
PGR044G0176 Punica granatum HOM05D007318 ORTHO05D009289 2.6e-61 239.6 188 58.0
unitig_0.g1560 Utricularia gibba HOM05D007318 ORTHO05D009289 4.5e-61 238.8 231 48.5
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 3.8e-60 235.7 241 50.6
ClCG05G021760 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.8e-60 235.7 182 59.9
Solyc11g006930.3 Solanum lycopersicum HOM05D007318 ORTHO05D009289 4.9e-60 235.3 185 58.9
Lj2A32G32 Lonicera japonica HOM05D007318 ORTHO05D009289 1.1e-59 234.2 234 47.4
ClCG05G018410 Citrullus lanatus HOM05D007318 ORTHO05D009289 3.2e-59 232.6 226 49.6
HPP92_018209 Vanilla planifolia HOM05D007318 ORTHO05D009289 3.2e-59 232.6 231 48.5
Psat2g020440 Pisum sativum HOM05D007318 ORTHO05D009289 2.5e-56 223.0 286 43.4
AagrBONN_evm.TU.Sc2ySwM_368.1913 Anthoceros agrestis HOM05D007318 ORTHO05D009289 3.3e-56 222.6 244 44.7
TAR636G1683 Trochodendron aralioides HOM05D007318 ORTHO05D009289 1.1e-51 207.6 142 66.9
AUR62042079 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.0e-49 201.1 182 49.5
AUR62043602 Chenopodium quinoa HOM05D007318 ORTHO05D009289 1.0e-49 201.1 182 49.5
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 2.3e-49 199.9 188 52.1
ClCG00G005260 Citrullus lanatus HOM05D007318 ORTHO05D009289 2.1e-42 176.8 133 58.6
Glyma.02G164100 Glycine max HOM05D007318 ORTHO05D009289 6.0e-42 175.3 138 58.7
MBI13_g43865_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 3.0e-41 172.9 112 72.3
MSTRG.421 Avicennia marina HOM05D007318 ORTHO05D009289 1.3e-39 167.5 130 61.5
Thecc.03G070600 Theobroma cacao HOM05D007318 ORTHO05D009289 2.8e-39 166.4 124 62.9
Pp3c5_16220 Physcomitrium patens HOM05D007318 ORTHO05D009289 4.8e-39 165.6 194 45.4
SEGI_17929 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 9.0e-38 161.4 126 61.1
Gohir.A02G015000 Gossypium hirsutum HOM05D007318 ORTHO05D009289 2.6e-37 159.8 134 51.5
PRCOL_00002097 Prasinoderma coloniale HOM05D007318 ORTHO05D009289 1.1e-35 154.5 248 32.7
MCO07G233 Micromonas commoda HOM05D007318 ORTHO05D009289 2.2e-31 140.2 279 31.9
Psat6g095000 Pisum sativum HOM05D007318 ORTHO05D009289 1.2e-29 134.4 246 36.2
SEGI_12071 Sequoiadendron giganteum HOM05D007318 ORTHO05D009289 7.9e-26 121.7 164 39.0
Dinv09612 Davidia involucrata HOM05D007318 ORTHO05D009289 1.4e-22 110.9 84 63.1
Lsat_1_v5_gn_5_177140 Lactuca sativa HOM05D007318 ORTHO05D009289 1.1e-19 101.3 108 49.1
Cre07.g323750 Chlamydomonas reinhardtii HOM05D007318 ORTHO05D009289 1.9e-19 100.5 224 33.5
PGSC0003DMG400023973 Solanum tuberosum HOM05D007318 ORTHO05D009289 9.4e-11 71.6 42 73.8
TAR636G1493 Trochodendron aralioides HOM05D007318 ORTHO05D009289 2.7e-10 70.1 57 54.4
Glyma.20G074100 Glycine max HOM05D007318 ORTHO05D009289 1.0e-09 68.2 82 41.5
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.4e-09 67.8 208 24.5
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 4.0e-09 66.2 213 24.4
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 5.2e-09 65.9 204 26.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 1.5e-08 64.3 201 26.4
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.5e-08 64.3 209 28.7
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.6e-08 63.5 202 25.2
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 2.6e-08 63.5 190 27.4
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.3e-08 63.2 202 25.2
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 4.4e-08 62.8 213 23.5
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.4e-08 62.8 174 25.3
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 5.7e-08 62.4 193 25.9
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 5.7e-08 62.4 195 25.1
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 5.7e-08 62.4 199 25.6
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 7.5e-08 62.0 195 25.6
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.5e-08 62.0 224 22.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 7.5e-08 62.0 198 26.8
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 7.5e-08 62.0 213 27.7
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 9.7e-08 61.6 215 24.7
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 9.7e-08 61.6 214 25.7
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 9.7e-08 61.6 178 25.3
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.7e-07 60.8 171 26.3
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 1.7e-07 60.8 210 24.8
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 2.8e-07 60.1 174 25.3
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 2.8e-07 60.1 168 26.8
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.8e-07 60.1 218 24.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 3.7e-07 59.7 139 29.5
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.8e-07 59.3 180 25.0
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.3e-07 58.9 139 29.5
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 6.3e-07 58.9 209 26.8
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 8.2e-07 58.5 139 28.8
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 8.2e-07 58.5 148 29.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 1.4e-06 57.8 205 26.3
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.4e-06 57.8 214 24.8
MBI13_g44208_MAGBIO Magnolia biondii HOM05D007318 ORTHO05D009289 1.8e-06 57.4 32 75.0
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.4e-06 57.0 204 25.5
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 2.4e-06 57.0 221 27.1
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.4e-06 57.0 205 26.3
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.1e-06 56.6 203 26.1
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 4.1e-06 56.2 211 24.6
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 5.3e-06 55.8 181 26.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 5.3e-06 55.8 205 23.9
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 7.0e-06 55.5 202 24.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 9.1e-06 55.1 200 24.5
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 9.1e-06 55.1 140 28.6
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 9.1e-06 55.1 207 23.7
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 9.1e-06 55.1 138 29.7


User provided reference genes

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