Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1096G020 Amborella trichopoda HOM05D002518 ORTHO05D002630 3.9e-147 525.0 312 100.0
ATR0307G086 Amborella trichopoda HOM05D002518 ORTHO05D002630 5.6e-21 105.9 142 45.1
Ciclev10030639m.g Citrus clementina HOM05D002518 ORTHO05D002630 5.3e-19 99.4 138 42.8
QL08p057433 Quercus lobata HOM05D002518 ORTHO05D002630 5.8e-18 95.9 148 38.5
MD07G1183400 Malus domestica HOM05D002518 ORTHO05D002630 7.6e-18 95.5 148 39.2
MBI13_g32814_MAGBIO Magnolia biondii HOM05D002518 ORTHO05D002630 2.2e-17 94.0 148 39.9
Peaxi162Scf00015g00273 Petunia axillaris HOM05D002518 ORTHO05D002630 2.9e-17 93.6 138 42.0
vmacro07106 Vaccinium macrocarpon HOM05D002518 ORTHO05D002630 2.9e-17 93.6 149 36.9
Manes.10G039900 Manihot esculenta HOM05D002518 ORTHO05D002630 3.8e-17 93.2 146 37.7
Hund19284 Selenicereus undatus HOM05D002518 ORTHO05D002630 3.8e-17 93.2 138 41.3
Actinidia03008 Actinidia chinensis HOM05D002518 ORTHO05D002630 4.9e-17 92.8 149 37.6
CSS0012201 Camellia sinensis var. sinensis HOM05D002518 ORTHO05D002630 4.9e-17 92.8 149 37.6
Gohir.D04G081600 Gossypium hirsutum HOM05D002518 ORTHO05D002630 4.9e-17 92.8 146 37.7
Gorai.012G092100 Gossypium raimondii HOM05D002518 ORTHO05D002630 4.9e-17 92.8 146 37.7
MELO3C025489.2 Cucumis melo HOM05D002518 ORTHO05D002630 6.5e-17 92.4 168 33.9
Ah.10g033160 Amaranthus hybridus HOM05D002518 ORTHO05D002630 8.4e-17 92.0 138 39.9
Gohir.A05G343300 Gossypium hirsutum HOM05D002518 ORTHO05D002630 8.4e-17 92.0 146 38.4
CSS0011254 Camellia sinensis var. sinensis HOM05D002518 ORTHO05D002630 1.1e-16 91.7 149 36.9
Sed0025529 Sechium edule HOM05D002518 ORTHO05D002630 1.1e-16 91.7 144 38.2
Actinidia38230 Actinidia chinensis HOM05D002518 ORTHO05D002630 1.4e-16 91.3 149 36.9
Cfa001564 Carpinus fangiana HOM05D002518 ORTHO05D002630 1.4e-16 91.3 148 37.2
Migut.F01537 Erythranthe guttata HOM05D002518 ORTHO05D002630 1.4e-16 91.3 148 36.5
Atru.chr12.601 Acer truncatum HOM05D002518 ORTHO05D002630 2.5e-16 90.5 144 38.9
Haze_16965 Corylus avellana HOM05D002518 ORTHO05D002630 2.5e-16 90.5 144 38.2
Lj1A929T68 Lonicera japonica HOM05D002518 ORTHO05D002630 2.5e-16 90.5 160 35.6
ClCG09G020340 Citrullus lanatus HOM05D002518 ORTHO05D002630 4.2e-16 89.7 146 34.2
HanXRQChr14g0460781 Helianthus annuus HOM05D002518 ORTHO05D002630 4.2e-16 89.7 138 39.9
CiPaw.01G279100 Carya illinoinensis HOM05D002518 ORTHO05D002630 5.5e-16 89.4 148 37.2
Gohir.D06G173800 Gossypium hirsutum HOM05D002518 ORTHO05D002630 5.5e-16 89.4 148 34.5
EL10Ac2g03516 Beta vulgaris HOM05D002518 ORTHO05D002630 7.1e-16 89.0 149 37.6
Duzib114G0996 Durio zibethinus HOM05D002518 ORTHO05D002630 9.3e-16 88.6 146 35.6
TWI15G0312 Tripterygium wilfordii HOM05D002518 ORTHO05D002630 9.3e-16 88.6 148 38.5
Cc02_g08710 Coffea canephora HOM05D002518 ORTHO05D002630 1.2e-15 88.2 144 38.9
Rhsim03G0121000 Rhododendron simsii HOM05D002518 ORTHO05D002630 1.2e-15 88.2 150 34.7
Solyc05g054930.3 Solanum lycopersicum HOM05D002518 ORTHO05D002630 1.2e-15 88.2 138 38.4
Sopen05g033390 Solanum pennellii HOM05D002518 ORTHO05D002630 1.2e-15 88.2 138 38.4
PGSC0003DMG401023504 Solanum tuberosum HOM05D002518 ORTHO05D002630 1.2e-15 88.2 138 38.4
CAN.G1465.17 Capsicum annuum HOM05D002518 ORTHO05D002630 1.6e-15 87.8 138 39.1
Cpa.g.sc10.58 Carica papaya HOM05D002518 ORTHO05D002630 1.6e-15 87.8 148 36.5
Gorai.010G203400 Gossypium raimondii HOM05D002518 ORTHO05D002630 1.6e-15 87.8 148 34.5
HanXRQChr07g0200471 Helianthus annuus HOM05D002518 ORTHO05D002630 2.1e-15 87.4 144 38.2
Oeu050634.1 Olea europaea HOM05D002518 ORTHO05D002630 2.1e-15 87.4 148 35.8
Gorai.011G242500 Gossypium raimondii HOM05D002518 ORTHO05D002630 2.7e-15 87.0 146 34.9
ECA238G0038 Erigeron canadensis HOM05D002518 ORTHO05D002630 3.5e-15 86.7 144 37.5
MSTRG.8231 Avicennia marina HOM05D002518 ORTHO05D002630 4.6e-15 86.3 156 37.2
COL.COLO4_06777 Corchorus olitorius HOM05D002518 ORTHO05D002630 4.6e-15 86.3 146 35.6
DCAR_015261 Daucus carota HOM05D002518 ORTHO05D002630 4.6e-15 86.3 128 37.5
Lj8A93T66 Lonicera japonica HOM05D002518 ORTHO05D002630 4.6e-15 86.3 146 35.6
SGA_v2.0_scaffold8G04439 Striga asiatica HOM05D002518 ORTHO05D002630 4.6e-15 86.3 148 37.8
Hma1.2p1_0207F.1_g088000 Hydrangea macrophylla HOM05D002518 ORTHO05D002630 6.0e-15 85.9 144 35.4
TWI63G1198 Tripterygium wilfordii HOM05D002518 ORTHO05D002630 6.0e-15 85.9 138 37.7
Gohir.A10G208600 Gossypium hirsutum HOM05D002518 ORTHO05D002630 7.9e-15 85.5 146 34.2
Gohir.D10G216901 Gossypium hirsutum HOM05D002518 ORTHO05D002630 7.9e-15 85.5 146 34.2
Potri.008G047200 Populus trichocarpa HOM05D002518 ORTHO05D002630 7.9e-15 85.5 144 38.2
Lsat_1_v5_gn_2_115260 Lactuca sativa HOM05D002518 ORTHO05D002630 1.0e-14 85.1 138 37.7
Nitab4.5_0003965g0010 Nicotiana tabacum HOM05D002518 ORTHO05D002630 1.0e-14 85.1 155 36.1
RcHm_v2.0_Chr1g0364701 Rosa chinensis HOM05D002518 ORTHO05D002630 1.0e-14 85.1 128 36.7
TAR633G0496 Trochodendron aralioides HOM05D002518 ORTHO05D002630 1.0e-14 85.1 146 37.7
TAR633G1082 Trochodendron aralioides HOM05D002518 ORTHO05D002630 1.0e-14 85.1 146 37.7
GSVIVG01032635001 Vitis vinifera HOM05D002518 ORTHO05D002630 1.0e-14 85.1 148 37.2
CsaV3_5G026090 Cucumis sativus L. HOM05D002518 ORTHO05D002630 1.3e-14 84.7 168 31.5
Dinv25940 Davidia involucrata HOM05D002518 ORTHO05D002630 1.3e-14 84.7 144 35.4
Thecc.10G063600 Theobroma cacao HOM05D002518 ORTHO05D002630 1.8e-14 84.3 146 34.2
CAN.G2070.1 Capsicum annuum HOM05D002518 ORTHO05D002630 2.3e-14 84.0 270 29.3
FvH4_7g20660 Fragaria vesca HOM05D002518 ORTHO05D002630 2.3e-14 84.0 149 34.9
FAN03G2748 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.3e-14 84.0 149 34.9
FAN06G4611 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.3e-14 84.0 149 34.9
Sc06g0001850 Simmondsia chinensis HOM05D002518 ORTHO05D002630 2.3e-14 84.0 138 38.4
Phvul.007G007200 Phaseolus vulgaris HOM05D002518 ORTHO05D002630 3.0e-14 83.6 148 37.8
CAN.G710.67 Capsicum annuum HOM05D002518 ORTHO05D002630 3.9e-14 83.2 160 35.6
TAR633G1707 Trochodendron aralioides HOM05D002518 ORTHO05D002630 3.9e-14 83.2 126 41.3
Manes.07G106100 Manihot esculenta HOM05D002518 ORTHO05D002630 5.1e-14 82.8 143 34.3
PSO063G6194 Papaver somniferum HOM05D002518 ORTHO05D002630 5.1e-14 82.8 148 37.2
DCAR_031727 Daucus carota HOM05D002518 ORTHO05D002630 6.7e-14 82.4 148 34.5
Glyma.20G243000 Glycine max HOM05D002518 ORTHO05D002630 6.7e-14 82.4 148 37.2
Prupe.2G222100 Prunus persica HOM05D002518 ORTHO05D002630 6.7e-14 82.4 150 38.0
CANSAT35G0792 Cannabis sativa HOM05D002518 ORTHO05D002630 8.7e-14 82.0 144 35.4
Duzib128G0274 Durio zibethinus HOM05D002518 ORTHO05D002630 8.7e-14 82.0 146 34.9
Oeu058329.1 Olea europaea HOM05D002518 ORTHO05D002630 1.1e-13 81.6 148 35.1
TPR.G10394 Trifolium pratense HOM05D002518 ORTHO05D002630 1.1e-13 81.6 148 35.8
Lj5g0003286 Lotus japonicus HOM05D002518 ORTHO05D002630 1.5e-13 81.3 148 35.1
HPP92_021170 Vanilla planifolia HOM05D002518 ORTHO05D002630 1.5e-13 81.3 144 36.1
CAN.G134.143 Capsicum annuum HOM05D002518 ORTHO05D002630 1.9e-13 80.9 126 37.3
MELO3C011711.2 Cucumis melo HOM05D002518 ORTHO05D002630 2.5e-13 80.5 124 40.3
Glyma.10G292800 Glycine max HOM05D002518 ORTHO05D002630 2.5e-13 80.5 148 36.5
Ca_11341_v3 Cicer arietinum L. HOM05D002518 ORTHO05D002630 3.3e-13 80.1 148 35.1
Ca_30327_v3 Cicer arietinum L. HOM05D002518 ORTHO05D002630 3.3e-13 80.1 148 35.1
Lalb_Chr02g0143821 Lupinus albus HOM05D002518 ORTHO05D002630 5.7e-13 79.3 148 33.1
AT3G55060 Arabidopsis thaliana HOM05D002518 ORTHO05D002630 7.4e-13 79.0 145 37.9
AUR62018473 Chenopodium quinoa HOM05D002518 ORTHO05D002630 7.4e-13 79.0 144 35.4
Potri.010G214300 Populus trichocarpa HOM05D002518 ORTHO05D002630 7.4e-13 79.0 149 32.9
VMungo0720G1865 Vigna mungo HOM05D002518 ORTHO05D002630 7.4e-13 79.0 148 36.5
Lalb_Chr06g0164081 Lupinus albus HOM05D002518 ORTHO05D002630 1.3e-12 78.2 146 33.6
Nn2g14619 Nelumbo nucifera HOM05D002518 ORTHO05D002630 1.3e-12 78.2 144 33.3
CAN.G2026.3 Capsicum annuum HOM05D002518 ORTHO05D002630 1.6e-12 77.8 128 38.3
PSO017G1865 Papaver somniferum HOM05D002518 ORTHO05D002630 2.2e-12 77.4 148 35.8
Sabra08G0033400 Salix brachista HOM05D002518 ORTHO05D002630 2.2e-12 77.4 144 34.7
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 2.2e-12 77.4 144 34.0
CAN.G1579.2 Capsicum annuum HOM05D002518 ORTHO05D002630 2.8e-12 77.0 150 36.0
CAN.G309.108 Capsicum annuum HOM05D002518 ORTHO05D002630 2.8e-12 77.0 125 37.6
Sabra10G0165700 Salix brachista HOM05D002518 ORTHO05D002630 2.8e-12 77.0 149 32.9
THA.LOC104825243 Tarenaya hassleriana HOM05D002518 ORTHO05D002630 4.8e-12 76.3 144 36.8
Carub.0005s2169 Capsella rubella HOM05D002518 ORTHO05D002630 6.3e-12 75.9 144 37.5
Thhalv10010113m.g Eutrema salsugineum HOM05D002518 ORTHO05D002630 6.3e-12 75.9 144 35.4
CAN.G309.119 Capsicum annuum HOM05D002518 ORTHO05D002630 8.2e-12 75.5 122 38.5
CAN.G575.111 Capsicum annuum HOM05D002518 ORTHO05D002630 8.2e-12 75.5 118 38.1
CDE08G0209 Ceratophyllum demersum HOM05D002518 ORTHO05D002630 8.2e-12 75.5 157 33.8
THA.LOC104809994 Tarenaya hassleriana HOM05D002518 ORTHO05D002630 8.2e-12 75.5 146 37.7
EL10Ac3g07389 Beta vulgaris HOM05D002518 ORTHO05D002630 1.1e-11 75.1 166 30.7
Sp5g07360 Schrenkiella parvula HOM05D002518 ORTHO05D002630 1.1e-11 75.1 145 35.2
AUR62020951 Chenopodium quinoa HOM05D002518 ORTHO05D002630 1.4e-11 74.7 157 34.4
Thhalv10016225m.g Eutrema salsugineum HOM05D002518 ORTHO05D002630 1.4e-11 74.7 138 35.5
MSTRG.313 Avicennia marina HOM05D002518 ORTHO05D002630 1.8e-11 74.3 148 33.1
CARHR134050 Cardamine hirsuta HOM05D002518 ORTHO05D002630 1.8e-11 74.3 144 34.7
Hund19043 Selenicereus undatus HOM05D002518 ORTHO05D002630 1.8e-11 74.3 152 32.9
unitig_749.g14015 Utricularia gibba HOM05D002518 ORTHO05D002630 1.8e-11 74.3 137 33.6
BcaC08g44721 Brassica carinata HOM05D002518 ORTHO05D002630 2.4e-11 73.9 148 34.5
C06p22590 Brassica napus HOM05D002518 ORTHO05D002630 2.4e-11 73.9 148 34.5
BolC6t37450H Brassica oleracea HOM05D002518 ORTHO05D002630 2.4e-11 73.9 148 34.5
A07p22420 Brassica napus HOM05D002518 ORTHO05D002630 3.1e-11 73.6 145 34.5
CAN.G1703.7 Capsicum annuum HOM05D002518 ORTHO05D002630 3.1e-11 73.6 118 38.1
PSO063G5989 Papaver somniferum HOM05D002518 ORTHO05D002630 3.1e-11 73.6 148 35.1
BraA07t29918Z Brassica rapa HOM05D002518 ORTHO05D002630 4.1e-11 73.2 145 34.5
CAN.G1579.3 Capsicum annuum HOM05D002518 ORTHO05D002630 6.9e-11 72.4 149 36.2
Sp4g21620 Schrenkiella parvula HOM05D002518 ORTHO05D002630 6.9e-11 72.4 144 34.7
SpUn0018_0050 Schrenkiella parvula HOM05D002518 ORTHO05D002630 6.9e-11 72.4 144 34.7
Sed0009032 Sechium edule HOM05D002518 ORTHO05D002630 6.9e-11 72.4 147 29.3
Aa31LG10G10080 Aethionema arabicum HOM05D002518 ORTHO05D002630 9.0e-11 72.0 151 33.1
CDE09G0657 Ceratophyllum demersum HOM05D002518 ORTHO05D002630 9.0e-11 72.0 152 33.6
PGR142G2021 Punica granatum HOM05D002518 ORTHO05D002630 9.0e-11 72.0 148 34.5
Aqoxy7G03758 Aquilegia oxysepala HOM05D002518 ORTHO05D002630 1.2e-10 71.6 144 32.6
CAN.G309.97 Capsicum annuum HOM05D002518 ORTHO05D002630 1.2e-10 71.6 145 35.2
AL5G36180 Arabidopsis lyrata HOM05D002518 ORTHO05D002630 1.5e-10 71.2 145 36.6
AT2G39300 Arabidopsis thaliana HOM05D002518 ORTHO05D002630 1.5e-10 71.2 126 36.5
Ah.13g077540 Amaranthus hybridus HOM05D002518 ORTHO05D002630 2.0e-10 70.9 148 33.8
SHI28186 Sapria himalayana HOM05D002518 ORTHO05D002630 2.6e-10 70.5 124 36.3
Aa31LG5G20280 Aethionema arabicum HOM05D002518 ORTHO05D002630 4.5e-10 69.7 143 31.5
Ah.04g149920 Amaranthus hybridus HOM05D002518 ORTHO05D002630 4.5e-10 69.7 145 32.4
BraA03t11437Z Brassica rapa HOM05D002518 ORTHO05D002630 4.5e-10 69.7 138 34.8
Carub.0004s2135 Capsella rubella HOM05D002518 ORTHO05D002630 5.9e-10 69.3 145 33.8
BcaB01g03661 Brassica carinata HOM05D002518 ORTHO05D002630 7.6e-10 68.9 138 34.8
A03p22020 Brassica napus HOM05D002518 ORTHO05D002630 7.6e-10 68.9 138 35.5
C03p26100 Brassica napus HOM05D002518 ORTHO05D002630 7.6e-10 68.9 138 34.8
Psat6g239640 Pisum sativum HOM05D002518 ORTHO05D002630 7.6e-10 68.9 148 29.7
BcaB01g03601 Brassica carinata HOM05D002518 ORTHO05D002630 1.0e-09 68.6 144 34.7
A05p07100 Brassica napus HOM05D002518 ORTHO05D002630 1.0e-09 68.6 138 34.8
CAN.G486.4 Capsicum annuum HOM05D002518 ORTHO05D002630 1.0e-09 68.6 276 29.0
CAN.G1353.19 Capsicum annuum HOM05D002496 ORTHO05D002787 1.3e-09 68.2 139 34.5
BcaC02g12048 Brassica carinata HOM05D002518 ORTHO05D002630 1.7e-09 67.8 138 33.3
C04p08480 Brassica napus HOM05D002518 ORTHO05D002630 1.7e-09 67.8 138 33.3
BolC4t22447H Brassica oleracea HOM05D002518 ORTHO05D002630 2.2e-09 67.4 138 33.3
FAN06G0455 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.2e-09 67.4 181 28.7
FAN10G2555 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.2e-09 67.4 181 28.7
FAN01G2220 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.9e-09 67.0 181 28.7
FAN01G2755 Fragaria x ananassa HOM05D002518 ORTHO05D002630 2.9e-09 67.0 181 28.7
BraA05t19675Z Brassica rapa HOM05D002518 ORTHO05D002630 5.0e-09 66.2 138 33.3
Zm00001eb399770 Zea mays HOM05D002518 ORTHO05D002630 5.0e-09 66.2 130 31.5
CAN.G1579.7 Capsicum annuum HOM05D002496 ORTHO05D002787 6.5e-09 65.9 116 37.1
Nitab4.5_0000914g0070 Nicotiana tabacum HOM05D002518 ORTHO05D002630 6.5e-09 65.9 202 28.2
CAN.G1751.10 Capsicum annuum HOM05D002518 ORTHO05D002630 8.5e-09 65.5 159 32.7
Os07g0686400 Oryza sativa ssp. japonica HOM05D002518 ORTHO05D002630 8.5e-09 65.5 130 29.2
Zm00001eb399780 Zea mays HOM05D002518 ORTHO05D002630 8.5e-09 65.5 149 30.9
CAN.G1563.4 Capsicum annuum HOM05D002518 ORTHO05D002630 1.1e-08 65.1 302 28.5
AL4G36640 Arabidopsis lyrata HOM05D002518 ORTHO05D002630 1.4e-08 64.7 144 32.6
CAN.G575.132 Capsicum annuum HOM05D002496 ORTHO05D002787 4.2e-08 63.2 295 25.4
BcaB02g09136 Brassica carinata HOM05D002518 ORTHO05D002630 5.5e-08 62.8 158 30.4
CARHR165080 Cardamine hirsuta HOM05D002518 ORTHO05D002630 7.2e-08 62.4 144 34.7
CAN.G2802.1 Capsicum annuum HOM05D002496 ORTHO05D002787 9.3e-08 62.0 108 35.2
BcaB02g07700 Brassica carinata HOM05D002518 ORTHO05D002630 1.6e-07 61.2 120 32.5
CAN.G2026.6 Capsicum annuum HOM05D002518 ORTHO05D002630 1.6e-07 61.2 118 35.6
CAN.G309.125 Capsicum annuum HOM05D002496 ORTHO05D002787 1.6e-07 61.2 139 34.5
Medtr1g116070 Medicago truncatula HOM05D002518 ORTHO05D002630 1.6e-07 61.2 108 36.1
CAN.G134.146 Capsicum annuum HOM05D002518 ORTHO05D002630 4.6e-07 59.7 271 28.4
CsaV3_5G006490 Cucumis sativus L. HOM05D002518 ORTHO05D002630 1.3e-06 58.2 96 38.5
CAN.G1669.10 Capsicum annuum HOM05D002496 ORTHO05D002787 1.8e-06 57.8 125 32.0
SEGI_21585 Sequoiadendron giganteum HOM05D002518 ORTHO05D002630 1.8e-06 57.8 116 31.0
Gohir.A06G179010 Gossypium hirsutum HOM05D002518 ORTHO05D002630 8.7e-06 55.5 130 27.7
PSO421G0235 Papaver somniferum HOM05D002518 ORTHO05D002630 8.7e-06 55.5 148 29.7


User provided reference genes

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