Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G122 Amborella trichopoda HOM05D007581 ORTHO05D009250 1.2e-39 166.8 137 100.0
Dinv37395 Davidia involucrata HOM05D007581 ORTHO05D009250 2.8e-25 119.0 137 72.3
TAR628G1203 Trochodendron aralioides HOM05D007581 ORTHO05D009250 1.4e-24 116.7 131 79.4
CSS0015328 Camellia sinensis var. sinensis HOM05D007581 ORTHO05D009250 2.6e-23 112.5 132 61.4
Eucgr.F04100 Eucalyptus grandis HOM05D007581 ORTHO05D009250 2.9e-22 109.0 130 67.7
Nn5g27166 Nelumbo nucifera HOM05D007581 ORTHO05D009250 2.9e-22 109.0 129 80.6
Peaxi162Scf00078g01222 Petunia axillaris HOM05D007581 ORTHO05D009250 3.8e-22 108.6 136 58.1
MSTRG.25512 Avicennia marina HOM05D007581 ORTHO05D009250 6.5e-22 107.8 136 73.5
GSVIVG01037110001 Vitis vinifera HOM05D007581 ORTHO05D009250 1.5e-21 106.7 133 63.9
MBI06_g43033_MAGBIO Magnolia biondii HOM05D007581 ORTHO05D009250 3.2e-21 105.5 136 72.1
Nitab4.5_0000079g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 5.5e-21 104.8 135 57.0
Nitab4.5_0006526g0010 Nicotiana tabacum HOM05D000128 ORTHO05D000059 5.5e-21 104.8 135 56.3
ECA247G3877 Erigeron canadensis HOM05D007581 ORTHO05D009250 1.6e-20 103.2 136 58.1
EL10Ac1g01297 Beta vulgaris HOM05D007581 ORTHO05D009250 2.1e-20 102.8 135 63.0
Haze_14032 Corylus avellana HOM05D007581 ORTHO05D009250 4.7e-20 101.7 133 66.9
Medtr6g060172 Medicago truncatula HOM05D007581 ORTHO05D009250 8.0e-20 100.9 135 62.2
Aqoxy6G00030 Aquilegia oxysepala HOM05D007581 ORTHO05D009250 1.0e-19 100.5 129 61.2
Manes.15G183800 Manihot esculenta HOM05D007581 ORTHO05D009250 1.8e-19 99.8 136 62.5
Lsat_1_v5_gn_1_24761 Lactuca sativa HOM05D007581 ORTHO05D009250 2.3e-19 99.4 129 67.4
HPP92_009197 Vanilla planifolia HOM05D007581 ORTHO05D009250 2.3e-19 99.4 129 67.4
Phvul.004G128300 Phaseolus vulgaris HOM05D007581 ORTHO05D009250 8.8e-19 97.4 137 57.7
Hund16921 Selenicereus undatus HOM05D007581 ORTHO05D009250 8.8e-19 97.4 135 72.6
ClCG08G001940 Citrullus lanatus HOM05D007581 ORTHO05D009250 1.2e-18 97.1 130 63.8
SGA_v2.0_scaffold118G32651 Striga asiatica HOM05D007581 ORTHO05D009250 1.2e-18 97.1 128 53.9
Ca_02136_v3 Cicer arietinum L. HOM05D007581 ORTHO05D009250 1.5e-18 96.7 130 72.3
MD00G1103300 Malus domestica HOM05D007581 ORTHO05D009250 1.5e-18 96.7 144 57.6
QL09p000889 Quercus lobata HOM05D007581 ORTHO05D009250 2.0e-18 96.3 128 72.7
TWI18G0093 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 3.4e-18 95.5 129 62.8
CiPaw.04G007300 Carya illinoinensis HOM05D007581 ORTHO05D009250 4.4e-18 95.1 134 64.2
Atru.chr13.2628 Acer truncatum HOM05D007581 ORTHO05D009250 5.7e-18 94.7 136 64.0
Glyma.09G154800 Glycine max HOM05D007581 ORTHO05D009250 5.7e-18 94.7 137 66.4
PSO210G2853 Papaver somniferum HOM05D007581 ORTHO05D009250 7.5e-18 94.4 130 67.7
Sed0022412 Sechium edule HOM05D007581 ORTHO05D009250 7.5e-18 94.4 130 65.4
Prupe.8G001100 Prunus persica HOM05D007581 ORTHO05D009250 9.7e-18 94.0 136 60.3
Potri.019G063300 Populus trichocarpa HOM05D007581 ORTHO05D009250 1.7e-17 93.2 129 59.7
Lalb_Chr01g0008751 Lupinus albus HOM05D007581 ORTHO05D009250 2.2e-17 92.8 129 69.8
Glyma.16G205300 Glycine max HOM05D007581 ORTHO05D009250 2.8e-17 92.4 137 58.4
CANSAT25G1375 Cannabis sativa HOM05D007581 ORTHO05D009250 6.3e-17 91.3 129 63.6
CANSAT25G2017 Cannabis sativa HOM05D007581 ORTHO05D009250 6.3e-17 91.3 129 63.6
MELO3C022112.2 Cucumis melo HOM05D007581 ORTHO05D009250 6.3e-17 91.3 137 61.3
FvH4_2g00130 Fragaria vesca HOM05D007581 ORTHO05D009250 6.3e-17 91.3 137 59.9
FAN24G1736 Fragaria x ananassa HOM05D007581 ORTHO05D009250 6.3e-17 91.3 137 59.9
Sabra19G0076500 Salix brachista HOM05D007581 ORTHO05D009250 6.3e-17 91.3 129 65.9
Sabra19G0080300 Salix brachista HOM05D007581 ORTHO05D009250 6.3e-17 91.3 129 65.9
CsaV3_5G039340 Cucumis sativus L. HOM05D007581 ORTHO05D009250 1.4e-16 90.1 137 61.3
Migut.C01409 Erythranthe guttata HOM05D007581 ORTHO05D009250 1.4e-16 90.1 141 62.4
PGSC0003DMG400016228 Solanum tuberosum HOM05D007581 ORTHO05D009250 1.4e-16 90.1 136 55.1
TPR.G20128 Trifolium pratense HOM05D007581 ORTHO05D009250 3.1e-16 89.0 131 69.5
Sc26g0002080 Simmondsia chinensis HOM05D007581 ORTHO05D009250 4.1e-16 88.6 131 58.8
CAN.G630.61 Capsicum annuum HOM05D007581 ORTHO05D009250 7.0e-16 87.8 128 56.2
Ciclev10022815m.g Citrus clementina HOM05D007581 ORTHO05D009250 7.0e-16 87.8 137 65.0
Lj2g0009073 Lotus japonicus HOM05D007581 ORTHO05D009250 7.0e-16 87.8 131 58.8
Gohir.D08G248900 Gossypium hirsutum HOM05D007581 ORTHO05D009250 2.7e-15 85.9 129 52.7
Gorai.004G265500 Gossypium raimondii HOM05D007581 ORTHO05D009250 2.7e-15 85.9 129 60.5
RcHm_v2.0_Chr6g0249391 Rosa chinensis HOM05D007581 ORTHO05D009250 2.7e-15 85.9 134 68.7
Sopen11g004800 Solanum pennellii HOM05D007581 ORTHO05D009250 3.5e-15 85.5 136 52.9
FAN19G1324 Fragaria x ananassa HOM05D007581 ORTHO05D009250 1.3e-14 83.6 134 55.2
Gohir.A08G228600 Gossypium hirsutum HOM05D007581 ORTHO05D009250 1.3e-14 83.6 129 59.7
Duzib116G0131 Durio zibethinus HOM05D007581 ORTHO05D009250 1.7e-14 83.2 137 50.4
AUR62013400 Chenopodium quinoa HOM05D007581 ORTHO05D009250 3.8e-14 82.0 165 59.4
Zm00001eb168090 Zea mays HOM05D007581 ORTHO05D009250 8.5e-14 80.9 134 67.9
DCAR_014049 Daucus carota HOM05D000133 ORTHO05D000259 1.9e-13 79.7 162 41.4
Lalb_Chr02g0149891 Lupinus albus HOM05D007581 ORTHO05D009250 5.5e-13 78.2 135 56.3
Cc10_g16220 Coffea canephora HOM05D007581 ORTHO05D009250 7.2e-13 77.8 127 59.8
BcaB05g23909 Brassica carinata HOM05D007581 ORTHO05D009250 9.4e-13 77.4 134 57.5
Os11g0242700 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 9.4e-13 77.4 133 68.4
THA.LOC104815611 Tarenaya hassleriana HOM05D007581 ORTHO05D009250 9.4e-13 77.4 134 64.2
BcaC03g16403 Brassica carinata HOM05D007581 ORTHO05D009250 1.2e-12 77.0 134 63.4
A02p26660 Brassica napus HOM05D007581 ORTHO05D009250 1.2e-12 77.0 134 63.4
C02p42350 Brassica napus HOM05D007581 ORTHO05D009250 1.2e-12 77.0 134 63.4
BraA02t07670Z Brassica rapa HOM05D007581 ORTHO05D009250 1.2e-12 77.0 134 63.4
Os01g0886500 Oryza sativa ssp. japonica HOM05D007581 ORTHO05D009250 1.2e-12 77.0 123 51.2
Solyc11g009030.1 Solanum lycopersicum HOM05D007581 ORTHO05D009250 1.6e-12 76.6 136 52.2
BolC2t10277H Brassica oleracea HOM05D007581 ORTHO05D009250 3.6e-12 75.5 132 58.3
Zm00001eb145430 Zea mays HOM05D007581 ORTHO05D009250 6.1e-12 74.7 130 62.3
Sp6g07100 Schrenkiella parvula HOM05D007581 ORTHO05D009250 8.0e-12 74.3 135 56.3
Thhalv10029062m.g Eutrema salsugineum HOM05D007581 ORTHO05D009250 1.0e-11 73.9 134 54.5
Carub.0006s2893 Capsella rubella HOM05D007581 ORTHO05D009250 3.0e-11 72.4 132 57.6
unitig_578.g16109 Utricularia gibba HOM05D007581 ORTHO05D009250 4.0e-11 72.0 137 65.0
Oeu028611.1 Olea europaea HOM05D007581 ORTHO05D009250 8.8e-11 70.9 98 73.5
AL6G44200 Arabidopsis lyrata HOM05D007581 ORTHO05D009250 1.5e-10 70.1 132 61.4
AT4G10330 Arabidopsis thaliana HOM05D007581 ORTHO05D009250 1.5e-10 70.1 135 49.6
Psat1g111920 Pisum sativum HOM05D007581 ORTHO05D009250 2.6e-10 69.3 65 52.3
Cpa.g.sc21.238 Carica papaya HOM05D007581 ORTHO05D009250 1.7e-09 66.6 58 50.0
CDE02G2090 Ceratophyllum demersum HOM05D002859 ORTHO05D003120 2.2e-09 66.2 100 86.0
Aa31LG9G11680 Aethionema arabicum HOM05D007581 ORTHO05D009250 2.8e-09 65.9 136 48.5
CARHR256310 Cardamine hirsuta HOM05D007581 ORTHO05D009250 4.8e-09 65.1 130 54.6
Dinv25473 Davidia involucrata HOM05D007581 ORTHO05D009250 7.7e-07 57.8 59 47.5
Mapoly0034s0024 Marchantia polymorpha HOM05D020710 ORTHO05D009250 1.0e-06 57.4 134 61.2
PGR102G1605 Punica granatum HOM05D007581 ORTHO05D009250 1.3e-06 57.0 105 77.1
TWI75G0477 Tripterygium wilfordii HOM05D007581 ORTHO05D009250 1.3e-06 57.0 98 70.4


User provided reference genes

Program Settings