Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G108 Amborella trichopoda HOM05D003883 ORTHO05D004605 4.3e-56 221.1 111 100.0
FvH4_2g00580 Fragaria vesca HOM05D003883 ORTHO05D004605 7.6e-21 104.0 106 52.8
MBI03_g20879_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 1.3e-20 103.2 103 52.4
RcHm_v2.0_Chr6g0251031 Rosa chinensis HOM05D003883 ORTHO05D004605 6.5e-20 100.9 106 50.9
FAN27G2158 Fragaria x ananassa HOM05D003883 ORTHO05D004605 8.4e-20 100.5 106 50.9
Sabra19G0082500 Salix brachista HOM05D003883 ORTHO05D004605 1.1e-19 100.1 102 52.9
Potri.019G069000 Populus trichocarpa HOM05D003883 ORTHO05D004605 2.5e-19 99.0 101 54.5
Thecc.04G023200 Theobroma cacao HOM05D003883 ORTHO05D004605 2.5e-19 99.0 112 50.9
FAN20G1119 Fragaria x ananassa HOM05D003883 ORTHO05D004605 3.2e-19 98.6 119 47.1
Os05g0427300 Oryza sativa ssp. japonica HOM05D003883 ORTHO05D004605 3.2e-19 98.6 87 63.2
SEGI_10411 Sequoiadendron giganteum HOM05D003883 ORTHO05D004605 3.2e-19 98.6 113 51.3
Nn5g27336 Nelumbo nucifera HOM05D003883 ORTHO05D004605 4.2e-19 98.2 114 48.2
Manes.18G112700 Manihot esculenta HOM05D003883 ORTHO05D004605 5.5e-19 97.8 110 48.2
ECA246G4775 Erigeron canadensis HOM05D003883 ORTHO05D004605 2.7e-18 95.5 99 53.5
CDE04G3585 Ceratophyllum demersum HOM05D003883 ORTHO05D004605 3.5e-18 95.1 111 46.8
GSVIVG01011528001 Vitis vinifera HOM05D003883 ORTHO05D004605 4.6e-18 94.7 106 50.0
Eucgr.F02940 Eucalyptus grandis HOM05D003883 ORTHO05D004605 6.0e-18 94.4 105 50.5
TAR633G0350 Trochodendron aralioides HOM05D003883 ORTHO05D004605 6.0e-18 94.4 112 49.1
GSVIVG01037209001 Vitis vinifera HOM05D003883 ORTHO05D004605 1.0e-17 93.6 97 52.6
MBI10_g20271_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 1.8e-17 92.8 112 45.5
Duzib147G1304 Durio zibethinus HOM05D003883 ORTHO05D004605 3.0e-17 92.0 101 50.5
PGSC0003DMG400026862 Solanum tuberosum HOM05D003883 ORTHO05D004605 3.0e-17 92.0 110 46.4
Cpa.g.sc21.99 Carica papaya HOM05D003883 ORTHO05D004605 5.1e-17 91.3 111 49.5
Dinv22125 Davidia involucrata HOM05D003883 ORTHO05D004605 5.1e-17 91.3 96 54.2
FAN06G0896 Fragaria x ananassa HOM05D003883 ORTHO05D004605 5.1e-17 91.3 112 47.3
HanXRQChr05g0150991 Helianthus annuus HOM05D003883 ORTHO05D004605 5.1e-17 91.3 105 49.5
CiPaw.03G013400 Carya illinoinensis HOM05D003883 ORTHO05D004605 8.7e-17 90.5 98 50.0
COL.COLO4_25136 Corchorus olitorius HOM05D003883 ORTHO05D004605 1.1e-16 90.1 102 50.0
Nitab4.5_0000009g0400 Nicotiana tabacum HOM05D003883 ORTHO05D004605 1.5e-16 89.7 97 50.5
Actinidia29370 Actinidia chinensis HOM05D003883 ORTHO05D004605 2.5e-16 89.0 88 55.7
Carub.0006s2868 Capsella rubella HOM05D003883 ORTHO05D004605 2.5e-16 89.0 65 64.6
Nitab4.5_0001202g0010 Nicotiana tabacum HOM05D003883 ORTHO05D004605 2.5e-16 89.0 97 49.5
Rhsim02G0081700 Rhododendron simsii HOM05D003883 ORTHO05D004605 2.5e-16 89.0 91 52.7
Aa31LG9G11890 Aethionema arabicum HOM05D003883 ORTHO05D004605 3.3e-16 88.6 53 73.6
AT4G10110 Arabidopsis thaliana HOM05D003883 ORTHO05D004605 4.3e-16 88.2 95 52.6
Lsat_1_v5_gn_6_111041 Lactuca sativa HOM05D003883 ORTHO05D004605 4.3e-16 88.2 108 47.2
PGR042G1493 Punica granatum HOM05D003883 ORTHO05D004605 5.7e-16 87.8 97 49.5
BcaB01g01452 Brassica carinata HOM05D003883 ORTHO05D004605 7.4e-16 87.4 56 71.4
Cc10_g16020 Coffea canephora HOM05D003883 ORTHO05D004605 7.4e-16 87.4 98 49.0
CsaV3_5G039780 Cucumis sativus L. HOM05D003883 ORTHO05D004605 7.4e-16 87.4 109 46.8
Haze_13971 Corylus avellana HOM05D003883 ORTHO05D004605 9.7e-16 87.0 98 49.0
SalBow7G2433 Salvia bowleyana HOM05D003883 ORTHO05D004605 9.7e-16 87.0 93 47.3
Sopen11g016790 Solanum pennellii HOM05D003883 ORTHO05D004605 9.7e-16 87.0 110 47.3
TWI12G1089 Tripterygium wilfordii HOM05D003883 ORTHO05D004605 9.7e-16 87.0 106 50.0
MELO3C033524.2 Cucumis melo HOM05D003883 ORTHO05D004605 1.3e-15 86.7 98 51.0
Migut.C01393 Erythranthe guttata HOM05D003883 ORTHO05D004605 1.3e-15 86.7 96 49.0
Peaxi162Scf00078g00928 Petunia axillaris HOM05D003883 ORTHO05D004605 1.3e-15 86.7 109 45.9
Solyc11g039950.3 Solanum lycopersicum HOM05D003883 ORTHO05D004605 1.3e-15 86.7 108 47.2
MSTRG.1604 Avicennia marina HOM05D003883 ORTHO05D004605 1.6e-15 86.3 112 48.2
Gohir.D04G041300 Gossypium hirsutum HOM05D003883 ORTHO05D004605 1.6e-15 86.3 113 46.0
Gorai.012G046700 Gossypium raimondii HOM05D003883 ORTHO05D004605 1.6e-15 86.3 113 46.0
unitig_749.g13869 Utricularia gibba HOM05D003883 ORTHO05D004605 1.6e-15 86.3 72 58.3
PSO210G0567 Papaver somniferum HOM05D003883 ORTHO05D004605 2.2e-15 85.9 65 61.5
PSO761G0643 Papaver somniferum HOM05D003883 ORTHO05D004605 2.2e-15 85.9 65 61.5
QL09p001675 Quercus lobata HOM05D003883 ORTHO05D004605 2.2e-15 85.9 92 48.9
THA.LOC104815789 Tarenaya hassleriana HOM05D003883 ORTHO05D004605 2.2e-15 85.9 53 71.7
HanXRQChr12g0369281 Helianthus annuus HOM05D003883 ORTHO05D004605 2.8e-15 85.5 78 55.1
Gohir.A05G374200 Gossypium hirsutum HOM05D003883 ORTHO05D004605 3.7e-15 85.1 102 47.1
Cc10_g13970 Coffea canephora HOM05D003883 ORTHO05D004605 4.8e-15 84.7 98 49.0
Lsat_1_v5_gn_1_24520 Lactuca sativa HOM05D005117 ORTHO05D005956 4.8e-15 84.7 53 71.7
MD10G1003200 Malus domestica HOM05D003883 ORTHO05D004605 4.8e-15 84.7 98 48.0
Sp6g07310 Schrenkiella parvula HOM05D003883 ORTHO05D004605 4.8e-15 84.7 91 51.6
CSS0035251 Camellia sinensis var. sinensis HOM05D003883 ORTHO05D004605 8.2e-15 84.0 101 50.5
Hund26941 Selenicereus undatus HOM05D003883 ORTHO05D004605 8.2e-15 84.0 111 45.0
Sc10g0006520 Simmondsia chinensis HOM05D003883 ORTHO05D004605 8.2e-15 84.0 89 55.1
Ah.05g170410 Amaranthus hybridus HOM05D003883 ORTHO05D004605 1.1e-14 83.6 96 46.9
Aqoxy5G01863 Aquilegia oxysepala HOM05D003883 ORTHO05D004605 1.1e-14 83.6 90 48.9
BcaC04g21018 Brassica carinata HOM05D003883 ORTHO05D004605 1.1e-14 83.6 90 52.2
C09p36620 Brassica napus HOM05D003883 ORTHO05D004605 1.1e-14 83.6 90 52.2
BolC9t56494H Brassica oleracea HOM05D003883 ORTHO05D004605 1.1e-14 83.6 90 52.2
Thhalv10029015m.g Eutrema salsugineum HOM05D003883 ORTHO05D004605 1.1e-14 83.6 91 51.6
SGA_v2.0_scaffold118G32634 Striga asiatica HOM05D003883 ORTHO05D004605 1.1e-14 83.6 65 58.5
arahy.Tifrunner.gnm1.ann1.6B58CR Arachis hypogaea HOM05D003883 ORTHO05D004605 1.4e-14 83.2 73 54.8
arahy.Tifrunner.gnm1.ann1.DBA4ID Arachis hypogaea HOM05D003883 ORTHO05D004605 1.4e-14 83.2 73 54.8
A09p28820 Brassica napus HOM05D003883 ORTHO05D004605 1.4e-14 83.2 84 52.4
BraA09t38444Z Brassica rapa HOM05D003883 ORTHO05D004605 1.4e-14 83.2 84 52.4
Lj7P418T16 Lonicera japonica HOM05D003883 ORTHO05D004605 1.4e-14 83.2 62 64.5
TWI75G0838 Tripterygium wilfordii HOM05D003883 ORTHO05D004605 1.4e-14 83.2 100 49.0
CARHR261150 Cardamine hirsuta HOM05D003883 ORTHO05D004605 1.8e-14 82.8 107 47.7
Ca_10599_v3 Cicer arietinum L. HOM05D003883 ORTHO05D004605 1.8e-14 82.8 53 67.9
DCAR_001170 Daucus carota HOM05D003883 ORTHO05D004605 1.8e-14 82.8 55 67.3
DCAR_010106 Daucus carota HOM05D003883 ORTHO05D004605 1.8e-14 82.8 55 67.3
Lalb_Chr02g0141881 Lupinus albus HOM05D003883 ORTHO05D004605 1.8e-14 82.8 100 47.0
Sed0003271 Sechium edule HOM05D003883 ORTHO05D004605 1.8e-14 82.8 105 43.8
Sed0024898 Sechium edule HOM05D003883 ORTHO05D004605 2.4e-14 82.4 102 46.1
SHI16809 Sapria himalayana HOM05D003883 ORTHO05D004605 3.1e-14 82.0 99 47.5
VMungo0720G2352 Vigna mungo HOM05D003883 ORTHO05D004605 3.1e-14 82.0 74 56.8
AL6G43920 Arabidopsis lyrata HOM05D003883 ORTHO05D004605 4.1e-14 81.6 92 50.0
CsaV3_5G039770 Cucumis sativus L. HOM05D003883 ORTHO05D004605 9.0e-14 80.5 105 45.7
Glyma.10G214800 Glycine max HOM05D003883 ORTHO05D004605 9.0e-14 80.5 96 45.8
Hma1.2p1_1248F.1_g270250 Hydrangea macrophylla HOM05D003883 ORTHO05D004605 9.0e-14 80.5 96 52.1
Psat6g186320 Pisum sativum HOM05D003883 ORTHO05D004605 9.0e-14 80.5 111 44.1
EL10Ac1g01277 Beta vulgaris HOM05D003883 ORTHO05D004605 1.2e-13 80.1 67 58.2
Lj5g0005523 Lotus japonicus HOM05D003883 ORTHO05D004605 1.2e-13 80.1 118 42.4
HPP92_004500 Vanilla planifolia HOM05D003883 ORTHO05D004605 1.2e-13 80.1 119 43.7
Atru.chr13.2533 Acer truncatum HOM05D003883 ORTHO05D004605 1.5e-13 79.7 110 45.5
CANSAT01G1230 Cannabis sativa HOM05D003883 ORTHO05D004605 1.5e-13 79.7 90 51.1
CDE02G3110 Ceratophyllum demersum HOM05D003883 ORTHO05D004605 1.5e-13 79.7 114 45.6
AUR62013386 Chenopodium quinoa HOM05D003883 ORTHO05D004605 2.0e-13 79.3 82 48.8
Ciclev10022415m.g Citrus clementina HOM05D003883 ORTHO05D004605 2.0e-13 79.3 77 51.9
Zm00001eb145960 Zea mays HOM05D003883 ORTHO05D004605 2.0e-13 79.3 82 51.2
MSTRG.25500 Avicennia marina HOM05D003883 ORTHO05D004605 2.6e-13 79.0 98 49.0
Glyma.20G177100 Glycine max HOM05D003883 ORTHO05D004605 2.6e-13 79.0 105 42.9
TPR.G1761 Trifolium pratense HOM05D003883 ORTHO05D004605 2.6e-13 79.0 53 66.0
Cfa008054 Carpinus fangiana HOM05D003883 ORTHO05D004605 3.4e-13 78.6 86 48.8
ClCG08G001170 Citrullus lanatus HOM05D003883 ORTHO05D004605 4.5e-13 78.2 111 42.3
RcHm_v2.0_Chr6g0280021 Rosa chinensis HOM05D003883 ORTHO05D004605 4.5e-13 78.2 106 46.2
AUR62038537 Chenopodium quinoa HOM05D003883 ORTHO05D004605 7.6e-13 77.4 82 48.8
SHI29471 Sapria himalayana HOM05D003883 ORTHO05D004605 7.6e-13 77.4 106 45.3
Phvul.007G091200 Phaseolus vulgaris HOM05D003883 ORTHO05D004605 1.0e-12 77.0 110 42.7
SHI17604 Sapria himalayana HOM05D003883 ORTHO05D004605 1.0e-12 77.0 99 45.5
SHI49925 Sapria himalayana HOM05D003883 ORTHO05D004605 1.3e-12 76.6 107 43.9
SMO307G0014 Selaginella moellendorffii HOM05D003883 ORTHO05D004605 1.3e-12 76.6 102 44.1
ClCG08G000830 Citrullus lanatus HOM05D003883 ORTHO05D004605 1.7e-12 76.3 48 68.8
Mapoly0019s0080 Marchantia polymorpha HOM05D003883 ORTHO05D004605 2.2e-12 75.9 94 48.9
Medtr1g096170 Medicago truncatula HOM05D003883 ORTHO05D004605 2.9e-12 75.5 115 41.7
AagrBONN_evm.TU.Sc2ySwM_228.826 Anthoceros agrestis HOM05D003883 ORTHO05D004605 3.8e-12 75.1 94 41.5
Oeu028627.2 Olea europaea HOM05D003883 ORTHO05D004605 3.8e-12 75.1 49 65.3
Lsat_1_v5_gn_7_27180 Lactuca sativa HOM05D003995 ORTHO05D004605 5.0e-12 74.7 51 64.7
SHI15762 Sapria himalayana HOM05D003883 ORTHO05D004605 5.0e-12 74.7 109 44.0
SEGI_14755 Sequoiadendron giganteum HOM05D003883 ORTHO05D004605 8.5e-12 73.9 103 42.7
MELO3C022158.2 Cucumis melo HOM05D003883 ORTHO05D004605 1.4e-11 73.2 94 45.7
SHI16558 Sapria himalayana HOM05D003883 ORTHO05D004605 1.4e-11 73.2 111 42.3
SHI22734 Sapria himalayana HOM05D003883 ORTHO05D004605 1.4e-11 73.2 54 63.0
SMO239G0046 Selaginella moellendorffii HOM05D003883 ORTHO05D004605 1.4e-11 73.2 91 45.1
SHI13269 Sapria himalayana HOM05D003883 ORTHO05D004605 2.5e-11 72.4 68 55.9
SHI16150 Sapria himalayana HOM05D003883 ORTHO05D004605 3.2e-11 72.0 54 61.1
SHI48034 Sapria himalayana HOM05D003883 ORTHO05D004605 5.5e-11 71.2 99 43.4
SHI03434 Sapria himalayana HOM05D003883 ORTHO05D004605 7.2e-11 70.9 54 61.1
DCAR_027538 Daucus carota HOM05D003883 ORTHO05D004605 9.4e-11 70.5 47 63.8
MBI17_g19026_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 1.2e-10 70.1 48 60.4
SHI45198 Sapria himalayana HOM05D003883 ORTHO05D004605 1.2e-10 70.1 47 68.1
SHI50134 Sapria himalayana HOM05D003883 ORTHO05D004605 1.2e-10 70.1 107 41.1
SHI31989 Sapria himalayana HOM05D003883 ORTHO05D004605 1.6e-10 69.7 113 41.6
MBI18_g04721_MAGBIO Magnolia biondii HOM05D003883 ORTHO05D004605 2.1e-10 69.3 69 53.6
Solyc10g081990.1 Solanum lycopersicum HOM05D003883 ORTHO05D004605 2.1e-10 69.3 77 49.4
SHI19852 Sapria himalayana HOM05D003883 ORTHO05D004605 4.6e-10 68.2 46 67.4
FvH4_3g25440 Fragaria vesca HOM05D003883 ORTHO05D004605 1.0e-09 67.0 43 67.4
SHI15221 Sapria himalayana HOM05D003883 ORTHO05D004605 1.4e-09 66.6 54 59.3
CBR_g955 Chara braunii HOM05D003883 ORTHO05D004605 1.8e-09 66.2 86 40.7
SHI15886 Sapria himalayana HOM05D003883 ORTHO05D004605 2.3e-09 65.9 99 42.4
SHI40358 Sapria himalayana HOM05D003883 ORTHO05D004605 2.3e-09 65.9 47 61.7
SHI01632 Sapria himalayana HOM05D003883 ORTHO05D004605 3.0e-09 65.5 107 43.0
SHI34947 Sapria himalayana HOM05D003883 ORTHO05D004605 3.0e-09 65.5 108 41.7
SHI47005 Sapria himalayana HOM05D003883 ORTHO05D004605 6.7e-09 64.3 99 41.4
SHI47059 Sapria himalayana HOM05D003883 ORTHO05D004605 8.8e-09 63.9 46 65.2
SHI53701 Sapria himalayana HOM05D003883 ORTHO05D004605 1.1e-08 63.5 48 62.5
Nitab4.5_0005094g0010 Nicotiana tabacum HOM05D003883 ORTHO05D004605 1.9e-08 62.8 49 59.2
SHI22499 Sapria himalayana HOM05D003883 ORTHO05D004605 2.5e-08 62.4 60 48.3
FAN11G1445 Fragaria x ananassa HOM05D003883 ORTHO05D004605 3.3e-08 62.0 39 69.2
Prupe.8G005800 Prunus persica HOM05D003883 ORTHO05D004605 3.3e-08 62.0 86 41.9
SHI12193 Sapria himalayana HOM05D000105 ORTHO05D004605 3.3e-08 62.0 90 43.3
SHI36014 Sapria himalayana HOM05D003883 ORTHO05D004605 4.3e-08 61.6 47 57.4
SHI45438 Sapria himalayana HOM05D003883 ORTHO05D004605 5.7e-08 61.2 100 40.0
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 7.4e-08 60.8 53 54.7
SHI25304 Sapria himalayana HOM05D003883 ORTHO05D004605 7.4e-08 60.8 110 43.6
SHI09697 Sapria himalayana HOM05D003883 ORTHO05D004605 9.7e-08 60.5 40 70.0
SHI24738 Sapria himalayana HOM05D003883 ORTHO05D004605 1.3e-07 60.1 99 40.4
SHI27587 Sapria himalayana HOM05D003883 ORTHO05D004605 2.2e-07 59.3 110 37.3
SHI00855 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-07 58.9 99 41.4
SHI51464 Sapria himalayana HOM05D003883 ORTHO05D004605 3.7e-07 58.5 40 62.5
SHI53632 Sapria himalayana HOM05D003883 ORTHO05D004605 8.2e-07 57.4 54 55.6
Thecc.08G180600 Theobroma cacao HOM05D003883 ORTHO05D004605 2.4e-06 55.8 110 34.5
SHI47009 Sapria himalayana HOM05D003883 ORTHO05D004605 4.1e-06 55.1 37 67.6
SHI54185 Sapria himalayana HOM05D003883 ORTHO05D004605 6.9e-06 54.3 37 67.6
SHI20281 Sapria himalayana HOM05D003883 ORTHO05D004605 9.1e-06 53.9 34 70.6


User provided reference genes

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