Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G102 Amborella trichopoda HOM05D005857 ORTHO05D007193 7.0e-28 126.7 58 100.0
Solyc01g102830.3 Solanum lycopersicum HOM05D005857 ORTHO05D007193 2.0e-22 108.6 57 82.5
Sopen01g045230 Solanum pennellii HOM05D005857 ORTHO05D007193 2.0e-22 108.6 57 82.5
PGSC0003DMG400018258 Solanum tuberosum HOM05D005857 ORTHO05D007193 2.0e-22 108.6 57 82.5
CAN.G1379.7 Capsicum annuum HOM05D005857 ORTHO05D007193 3.4e-22 107.8 57 82.5
MBI03_g21081_MAGBIO Magnolia biondii HOM05D005857 ORTHO05D007193 3.4e-22 107.8 53 92.5
Nitab4.5_0006159g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.4e-22 107.8 57 82.5
Thecc.06G020800 Theobroma cacao HOM05D005857 ORTHO05D007193 5.8e-22 107.1 54 88.9
Peaxi162Scf00194g01021 Petunia axillaris HOM05D005857 ORTHO05D007193 7.5e-22 106.7 54 85.2
CSS0006636 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 9.8e-22 106.3 54 88.9
Gohir.A05G160000 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.7e-21 105.5 54 87.0
Gohir.D05G162700 Gossypium hirsutum HOM05D005857 ORTHO05D007193 1.7e-21 105.5 54 87.0
Gorai.009G167700 Gossypium raimondii HOM05D005857 ORTHO05D007193 1.7e-21 105.5 54 87.0
PSO210G5758 Papaver somniferum HOM05D005857 ORTHO05D007193 1.7e-21 105.5 55 85.5
TWI23G0165 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 1.7e-21 105.5 55 85.5
CSS0043387 Camellia sinensis var. sinensis HOM05D005857 ORTHO05D007193 2.9e-21 104.8 54 87.0
PSO447G0367 Papaver somniferum HOM05D005857 ORTHO05D007193 2.9e-21 104.8 55 83.6
Aqoxy5G01841 Aquilegia oxysepala HOM05D005857 ORTHO05D007193 4.9e-21 104.0 55 83.6
Sc03g0005520 Simmondsia chinensis HOM05D005857 ORTHO05D007193 4.9e-21 104.0 58 81.0
CsaV3_5G027560 Cucumis sativus L. HOM05D005857 ORTHO05D007193 1.1e-20 102.8 55 83.6
Potri.004G229900 Populus trichocarpa HOM05D005857 ORTHO05D007193 1.1e-20 102.8 54 83.3
COL.COLO4_31107 Corchorus olitorius HOM05D005857 ORTHO05D007193 1.4e-20 102.4 54 85.2
Nitab4.5_0000521g0060 Nicotiana tabacum HOM05D005857 ORTHO05D007193 2.4e-20 101.7 57 77.2
TWI59G0768 Tripterygium wilfordii HOM05D005857 ORTHO05D007193 3.2e-20 101.3 54 83.3
FAN18G0749 Fragaria x ananassa HOM05D005857 ORTHO05D007193 4.1e-20 100.9 56 80.4
Oeu000158.1 Olea europaea HOM05D005857 ORTHO05D007193 4.1e-20 100.9 54 83.3
Zm00001eb244200 Zea mays HOM05D005857 ORTHO05D007193 4.1e-20 100.9 53 86.8
Os02g0564200 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 5.4e-20 100.5 53 84.9
FvH4_5g27520 Fragaria vesca HOM05D005857 ORTHO05D007193 9.2e-20 99.8 52 84.6
FAN04G0073 Fragaria x ananassa HOM05D005857 ORTHO05D007193 9.2e-20 99.8 56 80.4
RcHm_v2.0_Chr7g0218891 Rosa chinensis HOM05D005857 ORTHO05D007193 9.2e-20 99.8 55 81.8
SalBow1G1563 Salvia bowleyana HOM05D005857 ORTHO05D007193 9.2e-20 99.8 54 81.5
SGA_v2.0_scaffold100G29556 Striga asiatica HOM05D001195 ORTHO05D001138 9.2e-20 99.8 54 83.3
TAR628G1233 Trochodendron aralioides HOM05D005857 ORTHO05D007193 1.2e-19 99.4 57 78.9
Prupe.1G586500 Prunus persica HOM05D005857 ORTHO05D007193 3.5e-19 97.8 55 80.0
Manes.14G164233 Manihot esculenta HOM05D005857 ORTHO05D007193 4.6e-19 97.4 54 77.8
Oeu010607.1 Olea europaea HOM05D005857 ORTHO05D007193 4.6e-19 97.4 54 81.5
PGR042G3007 Punica granatum HOM05D005857 ORTHO05D007193 4.6e-19 97.4 54 79.6
Duzib133G0295 Durio zibethinus HOM05D005857 ORTHO05D007193 6.0e-19 97.1 54 79.6
Cpa.g.sc34.126 Carica papaya HOM05D005857 ORTHO05D007193 7.8e-19 96.7 54 75.9
vmacro01623 Vaccinium macrocarpon HOM05D005857 ORTHO05D007193 7.8e-19 96.7 54 77.8
AL1G26340 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.3e-18 95.9 54 74.1
AT1G14450 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.3e-18 95.9 54 74.1
BcaB03g13096 Brassica carinata HOM05D005857 ORTHO05D007193 1.3e-18 95.9 54 74.1
Cc08_g11670 Coffea canephora HOM05D005857 ORTHO05D007193 1.3e-18 95.9 54 79.6
HanXRQChr11g0343801 Helianthus annuus HOM05D005857 ORTHO05D007193 1.3e-18 95.9 54 79.6
MD08G1249300 Malus domestica HOM05D005857 ORTHO05D007193 1.7e-18 95.5 52 80.8
MD15G1444100 Malus domestica HOM05D005857 ORTHO05D007193 1.7e-18 95.5 52 80.8
Nitab4.5_0001085g0140 Nicotiana tabacum HOM05D005857 ORTHO05D007193 1.7e-18 95.5 52 78.8
Migut.B00707 Erythranthe guttata HOM05D005857 ORTHO05D007193 2.3e-18 95.1 54 79.6
CANSAT01G1822 Cannabis sativa HOM05D005857 ORTHO05D007193 3.0e-18 94.7 52 76.9
Aa31LG1G600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.9e-18 94.4 58 69.0
Aa31LG2G7600 Aethionema arabicum HOM05D005857 ORTHO05D007193 3.9e-18 94.4 54 74.1
THA.LOC104801779 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 3.9e-18 94.4 57 68.4
BcaC05g25348 Brassica carinata HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
A06p10470 Brassica napus HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
C05p12250 Brassica napus HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
BolC5t29979H Brassica oleracea HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
BraA06t24227Z Brassica rapa HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
Cfa004425 Carpinus fangiana HOM05D005857 ORTHO05D007193 5.1e-18 94.0 52 82.7
CiPaw.06G177300 Carya illinoinensis HOM05D005857 ORTHO05D007193 5.1e-18 94.0 52 80.8
Haze_09965 Corylus avellana HOM05D005857 ORTHO05D007193 5.1e-18 94.0 52 82.7
Thhalv10005238m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
Thhalv10009257m.g Eutrema salsugineum HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
Lsat_1_v5_gn_9_83180 Lactuca sativa HOM05D005857 ORTHO05D007193 5.1e-18 94.0 58 74.1
QL02p103650 Quercus lobata HOM05D005857 ORTHO05D007193 5.1e-18 94.0 52 78.8
SHI07423 Sapria himalayana HOM05D005857 ORTHO05D007193 5.1e-18 94.0 55 76.4
Sp1g12820 Schrenkiella parvula HOM05D005857 ORTHO05D007193 5.1e-18 94.0 54 72.2
THA.LOC104805131 Tarenaya hassleriana HOM05D005857 ORTHO05D007193 5.1e-18 94.0 57 70.2
CARHR014900 Cardamine hirsuta HOM05D005857 ORTHO05D007193 6.6e-18 93.6 54 72.2
Manes.06G013700 Manihot esculenta HOM05D005857 ORTHO05D007193 6.6e-18 93.6 54 74.1
Sed0006374 Sechium edule HOM05D005857 ORTHO05D007193 6.6e-18 93.6 52 80.8
Carub.0001s1416 Capsella rubella HOM05D005857 ORTHO05D007193 8.6e-18 93.2 56 69.6
BcaB07g30330 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
BcaC03g17146 Brassica carinata HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
C02p50660 Brassica napus HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
BolC2t11149H Brassica oleracea HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
BraA02t08316Z Brassica rapa HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
Carub.0005s0154 Capsella rubella HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
CARHR145070 Cardamine hirsuta HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 72.2
DCAR_001733 Daucus carota HOM05D005857 ORTHO05D007193 1.1e-17 92.8 54 75.9
AL5G11780 Arabidopsis lyrata HOM05D005857 ORTHO05D007193 1.5e-17 92.4 54 70.4
BcaB08g34397 Brassica carinata HOM05D005857 ORTHO05D007193 1.5e-17 92.4 54 70.4
C08p16740 Brassica napus HOM05D005857 ORTHO05D007193 1.5e-17 92.4 54 72.2
FAN08G0400 Fragaria x ananassa HOM05D005857 ORTHO05D007193 1.5e-17 92.4 47 87.2
Sp2g13760 Schrenkiella parvula HOM05D005857 ORTHO05D007193 1.5e-17 92.4 54 70.4
AT2G02510 Arabidopsis thaliana HOM05D005857 ORTHO05D007193 1.9e-17 92.0 54 70.4
Nitab4.5_0008987g0050 Nicotiana tabacum HOM05D005857 ORTHO05D007193 3.3e-17 91.3 57 68.4
AUR62040136 Chenopodium quinoa HOM05D005857 ORTHO05D007193 5.6e-17 90.5 60 68.3
Glyma.17G002300 Glycine max HOM05D005857 ORTHO05D007193 7.3e-17 90.1 55 78.2
Medtr4g134550 Medicago truncatula HOM05D005857 ORTHO05D007193 7.3e-17 90.1 52 73.1
AUR62032483 Chenopodium quinoa HOM05D005857 ORTHO05D007193 1.6e-16 89.0 60 68.3
ECA236G3879 Erigeron canadensis HOM05D005857 ORTHO05D007193 1.6e-16 89.0 56 69.6
Lj4g0009904 Lotus japonicus HOM05D005857 ORTHO05D007193 1.6e-16 89.0 51 76.5
TPR.G6546 Trifolium pratense HOM05D005857 ORTHO05D007193 1.6e-16 89.0 49 77.6
Psat0s2555g0160 Pisum sativum HOM05D005857 ORTHO05D007193 2.1e-16 88.6 52 73.1
CiPaw.05G001000 Carya illinoinensis HOM05D005857 ORTHO05D007193 2.8e-16 88.2 51 78.4
Lsat_1_v5_gn_9_124880 Lactuca sativa HOM05D005857 ORTHO05D007193 3.6e-16 87.8 47 85.1
Lalb_Chr12g0195891 Lupinus albus HOM05D005857 ORTHO05D007193 3.6e-16 87.8 47 83.0
HanXRQChr10g0285581 Helianthus annuus HOM05D005857 ORTHO05D007193 4.7e-16 87.4 54 74.1
MD11G1276400 Malus domestica HOM05D005857 ORTHO05D007193 1.8e-15 85.5 53 71.7
FAN13G1483 Fragaria x ananassa HOM05D005857 ORTHO05D007193 2.3e-15 85.1 45 82.2
Atru.chr6.134 Acer truncatum HOM05D005857 ORTHO05D007193 4.0e-15 84.3 48 77.1
Atru.chr6.187 Acer truncatum HOM05D005857 ORTHO05D007193 4.0e-15 84.3 48 77.1
Ca_13524_v3 Cicer arietinum L. HOM05D005857 ORTHO05D007193 5.2e-15 84.0 50 70.0
Actinidia11730 Actinidia chinensis HOM05D005857 ORTHO05D007193 8.9e-15 83.2 45 80.0
Ciclev10003044m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.9e-15 83.2 50 74.0
Ciclev10003046m.g Citrus clementina HOM05D005857 ORTHO05D007193 8.9e-15 83.2 50 74.0
EL10Ac3g06399 Beta vulgaris HOM05D005857 ORTHO05D007193 1.5e-14 82.4 54 64.8
Phvul.003G091000 Phaseolus vulgaris HOM05D005857 ORTHO05D007193 2.6e-14 81.6 51 68.6
Nitab4.5_0004030g0040 Nicotiana tabacum HOM05D005857 ORTHO05D007193 7.5e-14 80.1 52 65.4
Zm00001eb182520 Zea mays HOM05D005857 ORTHO05D007193 2.2e-13 78.6 52 69.2
Zm00001eb353890 Zea mays HOM05D005857 ORTHO05D007193 2.9e-13 78.2 40 85.0
unitig_8.g2962 Utricularia gibba HOM05D005857 ORTHO05D007193 3.7e-13 77.8 47 72.3
BcaC07g41575 Brassica carinata HOM05D005857 ORTHO05D007193 6.4e-13 77.0 39 82.1
Psat4g149960 Pisum sativum HOM05D005857 ORTHO05D007193 1.9e-12 75.5 52 63.5
BolC8t49293H Brassica oleracea HOM05D005857 ORTHO05D007193 2.1e-11 72.0 37 81.1
Zm00001eb203220 Zea mays HOM05D005857 ORTHO05D007193 3.5e-11 71.2 41 75.6
Zm00001eb203730 Zea mays HOM05D005857 ORTHO05D007193 1.3e-10 69.3 40 75.0
A02p32930 Brassica napus HOM05D005857 ORTHO05D007193 1.7e-10 68.9 44 65.9
Pp3c9_5250 Physcomitrium patens HOM05D005857 ORTHO05D007193 1.1e-09 66.2 53 54.7
GSVIVG01023132001 Vitis vinifera HOM05D005857 ORTHO05D007193 3.3e-09 64.7 30 90.0
Pp3c15_3960 Physcomitrium patens HOM05D005857 ORTHO05D007193 2.8e-08 61.6 50 54.0
Os07g0175750 Oryza sativa ssp. japonica HOM05D005857 ORTHO05D007193 1.1e-07 59.7 36 75.0
Mapoly0052s0008 Marchantia polymorpha HOM05D005857 ORTHO05D007193 5.2e-07 57.4 38 68.4
AagrBONN_evm.TU.Sc2ySwM_369.408 Anthoceros agrestis HOM05D005857 ORTHO05D007193 1.2e-06 56.2 51 45.1


User provided reference genes

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