Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 1.0e-179 633.3 316 100.0
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 7.8e-119 431.0 299 68.6
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 5.8e-114 414.8 312 65.4
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 5.4e-112 408.3 283 67.1
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 7.8e-111 404.4 303 65.0
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 3.9e-110 402.1 300 64.3
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 5.0e-110 401.7 294 63.9
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 4.3e-109 398.7 294 65.3
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 5.6e-109 398.3 307 64.5
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 1.6e-108 396.7 291 66.0
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 2.1e-108 396.4 311 62.7
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 3.1e-107 392.5 307 61.6
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 5.2e-107 391.7 310 61.0
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 8.9e-107 391.0 299 60.9
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 1.5e-106 390.2 299 60.5
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 2.0e-106 389.8 320 60.0
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 2.6e-106 389.4 298 61.4
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 3.4e-106 389.0 302 62.6
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 7.5e-106 387.9 300 63.0
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 9.8e-106 387.5 294 63.9
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 1.3e-105 387.1 314 61.8
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 1.9e-104 383.3 317 58.7
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 4.1e-104 382.1 298 62.4
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 4.1e-104 382.1 301 59.5
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 5.4e-104 381.7 298 62.1
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 7.1e-104 381.3 305 59.7
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 1.6e-103 380.2 291 61.5
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 2.1e-103 379.8 298 60.4
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 2.7e-103 379.4 293 62.5
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 4.6e-103 378.6 291 60.5
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 6.0e-103 378.3 314 59.6
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.5e-101 373.6 291 60.1
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 3.3e-101 372.5 298 60.7
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 4.7e-100 368.6 308 58.4
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 8.1e-100 367.9 297 59.9
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 1.1e-99 367.5 303 60.4
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 3.1e-99 365.9 302 58.9
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 4.0e-99 365.5 305 58.7
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 1.2e-98 364.0 302 58.9
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.0e-98 363.2 295 61.4
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 2.6e-98 362.8 291 60.1
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 5.8e-98 361.7 297 58.9
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 1.7e-97 360.1 301 57.8
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 1.7e-97 360.1 304 57.6
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 1.7e-97 360.1 280 61.4
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 2.2e-97 359.8 310 56.8
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 3.7e-97 359.0 267 63.7
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 1.1e-96 357.5 305 57.4
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 7.1e-96 354.8 291 58.4
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 9.2e-96 354.4 314 55.4
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 1.6e-95 353.6 290 60.0
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.0e-95 351.7 270 63.3
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 1.0e-94 350.9 297 55.6
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 1.0e-94 350.9 297 55.2
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 1.0e-94 350.9 285 62.5
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 1.0e-94 350.9 302 54.0
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 1.7e-94 350.1 291 56.4
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 3.9e-94 349.0 313 53.7
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 5.1e-94 348.6 321 53.3
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 1.1e-93 347.4 298 55.7
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 7.3e-93 344.7 314 54.1
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 1.6e-92 343.6 291 54.0
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 2.1e-92 343.2 291 54.0
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 3.6e-92 342.4 291 54.3
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 4.4e-90 335.5 310 51.6
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 5.8e-90 335.1 310 51.6
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 7.6e-90 334.7 348 52.0
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 6.4e-89 331.6 310 51.3
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 2.7e-87 326.2 268 61.6
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 2.7e-87 326.2 316 51.3
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.9e-86 322.4 294 56.1
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 1.9e-85 320.1 305 54.4
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 1.6e-84 317.0 291 56.0
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 5.3e-83 312.0 271 57.9
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 3.2e-80 302.8 287 55.7
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 4.2e-80 302.4 301 46.5
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.1e-75 287.7 294 53.7
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 2.4e-75 286.6 321 46.7
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.2e-71 274.2 211 61.6
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 1.5e-69 267.3 203 62.1
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.4e-67 260.8 241 57.7
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 6.9e-67 258.5 211 59.2
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 6.9e-67 258.5 349 47.3
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 9.0e-67 258.1 270 55.2
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 3.8e-65 252.7 211 57.8
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.4e-64 250.8 205 56.1
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 6.0e-63 245.4 210 55.2
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 8.2e-60 235.0 271 50.6
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 1.0e-57 228.0 316 41.5
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 9.0e-51 204.9 181 58.6
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 4.2e-48 196.1 291 39.5
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 9.4e-48 194.9 283 40.6
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 5.1e-46 189.1 211 44.1
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 2.2e-44 183.7 122 69.7
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 7.9e-39 165.2 187 44.9
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 1.8e-38 164.1 126 58.7
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 4.8e-36 156.0 298 32.9
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 2.5e-32 143.7 96 69.8
Peaxi162Scf00078g01023 Petunia axillaris HOM05D006784 ORTHO05D008508 7.2e-32 142.1 145 53.8
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 8.0e-31 138.7 110 60.9
PGSC0003DMG401006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 5.2e-30 136.0 90 70.0
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.1e-29 134.8 91 70.3
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 9.1e-27 125.2 166 38.0
Os11g0236000 Oryza sativa ssp. japonica HOM05D006784 ORTHO05D008508 1.2e-26 124.8 80 65.0
FAN20G3191 Fragaria x ananassa HOM05D006784 ORTHO05D008508 2.0e-26 124.0 94 62.8
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 5.5e-24 115.9 178 42.1
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 7.2e-24 115.5 287 30.7
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 2.2e-20 104.0 79 57.0
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.7e-20 103.2 77 63.6
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 6.3e-20 102.4 77 63.6
Atru.chr7.394 Acer truncatum HOM05D006784 ORTHO05D008508 2.9e-17 93.6 64 64.1
QL09p001297 Quercus lobata HOM05D006784 ORTHO05D008508 2.0e-13 80.9 59 55.9
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.7e-10 68.9 152 33.6
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 7.7e-10 68.9 152 33.6
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.7e-09 67.8 152 33.6
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 3.8e-09 66.6 218 27.1
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 3.3e-08 63.5 45 66.7
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 4.7e-07 59.7 43 65.1
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 6.1e-07 59.3 42 64.3


User provided reference genes

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