Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G072 Amborella trichopoda HOM05D004337 ORTHO05D005422 0.0e+00 1164.1 595 100.0
Manes.12G081000 Manihot esculenta HOM05D004337 ORTHO05D005422 2.5e-280 968.4 573 80.6
CiPaw.15G184900 Carya illinoinensis HOM05D004337 ORTHO05D005422 6.9e-278 960.3 573 81.0
TAR376G0777 Trochodendron aralioides HOM05D004337 ORTHO05D005422 9.0e-278 959.9 596 78.9
MBI06_g32147_MAGBIO Magnolia biondii HOM05D004337 ORTHO05D005422 1.5e-277 959.1 575 81.9
Cfa020919 Carpinus fangiana HOM05D004337 ORTHO05D005422 1.3e-276 956.1 595 76.8
MD15G1140200 Malus domestica HOM05D004337 ORTHO05D005422 1.4e-275 952.6 598 76.8
Potri.004G134500 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.4e-275 952.6 573 78.7
Potri.T045800 Populus trichocarpa HOM05D004337 ORTHO05D005422 1.4e-275 952.6 577 78.7
Potri.018G137500 Populus trichocarpa HOM05D004337 ORTHO05D005422 4.2e-275 951.0 577 78.5
Sabra04G0083600 Salix brachista HOM05D004337 ORTHO05D005422 5.5e-275 950.7 573 78.2
Aqoxy5G01850 Aquilegia oxysepala HOM05D004337 ORTHO05D005422 1.2e-274 949.5 574 80.8
Prupe.4G286100 Prunus persica HOM05D004337 ORTHO05D005422 1.6e-274 949.1 574 79.8
Gohir.A05G375100 Gossypium hirsutum HOM05D004337 ORTHO05D005422 2.7e-274 948.3 573 78.0
Thecc.01G146600 Theobroma cacao HOM05D004337 ORTHO05D005422 3.6e-274 948.0 573 78.9
Gohir.D04G040600 Gossypium hirsutum HOM05D004337 ORTHO05D005422 6.1e-274 947.2 573 78.0
Gorai.012G045800 Gossypium raimondii HOM05D004337 ORTHO05D005422 6.1e-274 947.2 573 78.0
Ciclev10025224m.g Citrus clementina HOM05D004337 ORTHO05D005422 2.3e-273 945.3 579 78.6
Gohir.A12G002300 Gossypium hirsutum HOM05D004337 ORTHO05D005422 8.8e-273 943.3 572 78.5
Dinv09624 Davidia involucrata HOM05D004337 ORTHO05D005422 7.4e-272 940.3 572 79.5
Actinidia36582 Actinidia chinensis HOM05D004337 ORTHO05D005422 1.1e-270 936.4 579 78.8
Gorai.008G001400 Gossypium raimondii HOM05D004337 ORTHO05D005422 1.4e-270 936.0 579 77.5
Hma1.2p1_0296F.1_g116900 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.9e-270 933.7 570 80.0
Atru.chr3.1466 Acer truncatum HOM05D004337 ORTHO05D005422 1.2e-269 932.9 576 78.0
QL10p037473 Quercus lobata HOM05D004337 ORTHO05D005422 3.4e-269 931.4 572 78.8
MSTRG.23236 Avicennia marina HOM05D004337 ORTHO05D005422 4.5e-269 931.0 572 77.3
MELO3C003282.2 Cucumis melo HOM05D004337 ORTHO05D005422 1.3e-268 929.5 576 77.6
PGR119G0424 Punica granatum HOM05D004337 ORTHO05D005422 2.9e-268 928.3 570 78.8
CsaV3_4G030000 Cucumis sativus L. HOM05D004337 ORTHO05D005422 3.8e-268 927.9 573 77.8
Sed0025757 Sechium edule HOM05D004337 ORTHO05D005422 5.0e-268 927.5 573 78.4
Actinidia19947 Actinidia chinensis HOM05D004337 ORTHO05D005422 8.5e-268 926.8 573 79.4
GSVIVG01000243001 Vitis vinifera HOM05D004337 ORTHO05D005422 1.4e-267 926.0 572 77.4
Hund21761 Selenicereus undatus HOM05D004337 ORTHO05D005422 5.5e-267 924.1 572 77.4
Eucgr.I00018 Eucalyptus grandis HOM05D004337 ORTHO05D005422 9.4e-267 923.3 570 78.8
Peaxi162Scf00353g00735 Petunia axillaris HOM05D004337 ORTHO05D005422 6.1e-266 920.6 580 76.7
Zm00001eb082160 Zea mays HOM05D004337 ORTHO05D005422 1.0e-265 919.8 584 76.4
RcHm_v2.0_Chr3g0484771 Rosa chinensis HOM05D004337 ORTHO05D005422 5.1e-265 917.5 550 78.5
Lsat_1_v5_gn_2_40441 Lactuca sativa HOM05D004337 ORTHO05D005422 1.1e-264 916.4 597 76.7
Zm00001eb422980 Zea mays HOM05D004337 ORTHO05D005422 1.5e-264 916.0 579 76.5
CANSAT54G2432 Cannabis sativa HOM05D004337 ORTHO05D005422 2.0e-264 915.6 580 76.6
THA.LOC104818397 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 2.0e-264 915.6 572 77.8
TWI75G1462 Tripterygium wilfordii HOM05D004337 ORTHO05D005422 7.4e-264 913.7 573 76.6
Os04g0441900 Oryza sativa ssp. japonica HOM05D004337 ORTHO05D005422 1.3e-263 912.9 586 75.3
EL10Ac4g09743 Beta vulgaris HOM05D004337 ORTHO05D005422 2.2e-263 912.1 563 76.6
Sopen05g034740 Solanum pennellii HOM05D004337 ORTHO05D005422 6.3e-263 910.6 578 74.9
THA.LOC104819366 Tarenaya hassleriana HOM05D004337 ORTHO05D005422 8.2e-263 910.2 572 76.0
CAN.G1156.26 Capsicum annuum HOM05D004337 ORTHO05D005422 1.4e-262 909.4 569 76.6
Solyc05g056350.3 Solanum lycopersicum HOM05D004337 ORTHO05D005422 1.8e-262 909.1 578 74.9
FvH4_1g25770 Fragaria vesca HOM05D004337 ORTHO05D005422 4.1e-262 907.9 578 75.3
Oeu054207.1 Olea europaea HOM05D004337 ORTHO05D005422 4.1e-262 907.9 590 74.9
Thhalv10013045m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 9.1e-262 906.7 577 76.3
FAN26G1467 Fragaria x ananassa HOM05D004337 ORTHO05D005422 2.6e-261 905.2 596 73.7
FAN23G1824 Fragaria x ananassa HOM05D004337 ORTHO05D005422 3.5e-261 904.8 596 73.8
AL6G19170 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 4.5e-261 904.4 574 76.1
unitig_736.g22365 Utricularia gibba HOM05D004337 ORTHO05D005422 4.5e-261 904.4 561 77.9
FAN28G1720 Fragaria x ananassa HOM05D004337 ORTHO05D005422 5.9e-261 904.0 596 73.7
Nitab4.5_0000496g0240 Nicotiana tabacum HOM05D004337 ORTHO05D005422 7.7e-261 903.7 553 78.3
Sc16g0009860 Simmondsia chinensis HOM05D004337 ORTHO05D005422 7.7e-261 903.7 549 77.8
HPP92_009218 Vanilla planifolia HOM05D004337 ORTHO05D005422 7.7e-261 903.7 572 76.7
arahy.Tifrunner.gnm1.ann1.X1BSDH Arachis hypogaea HOM05D004337 ORTHO05D005422 1.0e-260 903.3 548 78.8
ECA238G0122 Erigeron canadensis HOM05D004337 ORTHO05D005422 1.3e-260 902.9 576 76.4
PGSC0003DMG400023451 Solanum tuberosum HOM05D004337 ORTHO05D005422 2.2e-260 902.1 585 74.0
Carub.0006s0742 Capsella rubella HOM05D004337 ORTHO05D005422 2.9e-260 901.7 574 76.3
CARHR204490 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.9e-259 899.0 577 75.2
FAN19G0301 Fragaria x ananassa HOM05D004337 ORTHO05D005422 1.9e-259 899.0 595 73.3
BcaB08g37252 Brassica carinata HOM05D004337 ORTHO05D005422 2.5e-259 898.7 580 74.8
BolC9t59595H Brassica oleracea HOM05D004337 ORTHO05D005422 2.5e-259 898.7 579 74.8
Oeu017633.3 Olea europaea HOM05D004337 ORTHO05D005422 2.5e-259 898.7 572 76.6
AUR62006971 Chenopodium quinoa HOM05D004337 ORTHO05D005422 7.2e-259 897.1 560 76.1
Lalb_Chr07g0183961 Lupinus albus HOM05D004337 ORTHO05D005422 7.2e-259 897.1 575 75.7
Lj1g0000957 Lotus japonicus HOM05D004337 ORTHO05D005422 9.4e-259 896.7 567 76.4
AUR62000615 Chenopodium quinoa HOM05D004337 ORTHO05D005422 2.1e-258 895.6 560 76.1
PSO761G0180 Papaver somniferum HOM05D004337 ORTHO05D005422 3.6e-258 894.8 574 75.3
VMungo1309G0234 Vigna mungo HOM05D004337 ORTHO05D005422 4.7e-258 894.4 597 73.7
C09p68510 Brassica napus HOM05D004337 ORTHO05D005422 6.1e-258 894.0 578 74.4
PSO210G2848 Papaver somniferum HOM05D004337 ORTHO05D005422 8.0e-258 893.6 581 74.5
Aa31LG11G2980 Aethionema arabicum HOM05D004337 ORTHO05D005422 1.0e-257 893.3 573 73.8
BraA10t44874Z Brassica rapa HOM05D004337 ORTHO05D005422 1.4e-257 892.9 578 74.4
COL.COLO4_33529 Corchorus olitorius HOM05D004337 ORTHO05D005422 1.4e-257 892.9 599 75.0
Oeu046358.1 Olea europaea HOM05D004337 ORTHO05D005422 1.8e-257 892.5 573 74.9
Glyma.06G161400 Glycine max HOM05D004337 ORTHO05D005422 3.9e-257 891.3 583 76.0
Glyma.04G203800 Glycine max HOM05D004337 ORTHO05D005422 6.7e-257 890.6 596 73.5
Medtr3g098210 Medicago truncatula HOM05D004337 ORTHO05D005422 6.7e-257 890.6 596 73.2
SGA_v2.0_scaffold12G06278 Striga asiatica HOM05D004337 ORTHO05D005422 1.5e-256 889.4 594 72.7
Nitab4.5_0004764g0030 Nicotiana tabacum HOM05D004337 ORTHO05D005422 2.0e-256 889.0 555 78.0
HanXRQChr10g0285831 Helianthus annuus HOM05D004337 ORTHO05D005422 3.3e-256 888.3 548 77.7
Migut.H02542 Erythranthe guttata HOM05D004337 ORTHO05D005422 4.4e-256 887.9 572 74.1
Psat5g057120 Pisum sativum HOM05D004337 ORTHO05D005422 7.4e-256 887.1 574 76.1
A10p28250 Brassica napus HOM05D004337 ORTHO05D005422 1.7e-255 885.9 577 74.0
Lalb_Chr12g0202711 Lupinus albus HOM05D004337 ORTHO05D005422 1.7e-255 885.9 575 75.0
Nn5g27210 Nelumbo nucifera HOM05D004337 ORTHO05D005422 4.8e-255 884.4 519 82.5
Sp2g23620 Schrenkiella parvula HOM05D004337 ORTHO05D005422 4.8e-255 884.4 574 73.5
TPR.G7800 Trifolium pratense HOM05D004337 ORTHO05D005422 6.3e-255 884.0 573 75.0
Thhalv10003872m.g Eutrema salsugineum HOM05D004337 ORTHO05D005422 1.1e-254 883.2 574 73.2
Lj4A821G42 Lonicera japonica HOM05D004337 ORTHO05D005422 1.1e-254 883.2 552 77.2
Rhsim10G0124700 Rhododendron simsii HOM05D004337 ORTHO05D005422 2.4e-254 882.1 675 66.1
CARHR189960 Cardamine hirsuta HOM05D004337 ORTHO05D005422 1.6e-253 879.4 573 73.5
Phvul.009G159800 Phaseolus vulgaris HOM05D004337 ORTHO05D005422 1.6e-253 879.4 599 73.3
BcaB04g19858 Brassica carinata HOM05D004337 ORTHO05D005422 2.0e-253 879.0 573 73.5
A06p34530 Brassica napus HOM05D004337 ORTHO05D005422 2.6e-253 878.6 573 73.1
BraA06t26382Z Brassica rapa HOM05D004337 ORTHO05D005422 1.0e-252 876.7 573 72.9
Carub.0006s2135 Capsella rubella HOM05D004337 ORTHO05D005422 1.7e-252 875.9 573 73.1
Ca_17042_v3 Cicer arietinum L. HOM05D004337 ORTHO05D005422 1.7e-252 875.9 573 76.3
C09p07600 Brassica napus HOM05D004337 ORTHO05D005422 2.9e-252 875.2 573 72.6
C07p43970 Brassica napus HOM05D004337 ORTHO05D005422 3.8e-252 874.8 573 72.8
BraA09t36334Z Brassica rapa HOM05D004337 ORTHO05D005422 3.8e-252 874.8 573 72.9
BolC9t53677H Brassica oleracea HOM05D004337 ORTHO05D005422 6.5e-252 874.0 573 72.6
BcaC04g23504 Brassica carinata HOM05D004337 ORTHO05D005422 8.5e-252 873.6 573 72.6
AL6G34865 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 1.9e-251 872.5 573 72.4
A09p06870 Brassica napus HOM05D004337 ORTHO05D005422 1.9e-251 872.5 573 72.6
BolC7t44925H Brassica oleracea HOM05D004337 ORTHO05D005422 4.2e-251 871.3 573 72.6
AT5G23575 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 8.0e-250 867.1 573 71.9
Dinv10851 Davidia involucrata HOM05D004337 ORTHO05D005422 2.3e-249 865.5 527 80.6
Aa31LG3G18040 Aethionema arabicum HOM05D004337 ORTHO05D005422 3.0e-249 865.1 573 72.9
SGA_v2.0_scaffold51G18842 Striga asiatica HOM05D004337 ORTHO05D005422 3.0e-249 865.1 574 74.2
arahy.Tifrunner.gnm1.ann1.397MFZ Arachis hypogaea HOM05D004337 ORTHO05D005422 4.0e-249 864.8 611 70.5
DCAR_009619 Daucus carota HOM05D004337 ORTHO05D005422 2.2e-244 849.0 582 72.2
AT5G08500 Arabidopsis thaliana HOM05D004337 ORTHO05D005422 2.3e-241 839.0 523 77.4
Sp6g34400 Schrenkiella parvula HOM05D004337 ORTHO05D005422 7.0e-238 827.4 580 71.4
Peaxi162Scf00651g00114 Petunia axillaris HOM05D004337 ORTHO05D005422 2.0e-237 825.9 576 70.8
CSS0021638 Camellia sinensis var. sinensis HOM05D004337 ORTHO05D005422 4.2e-235 818.1 499 80.0
Mapoly0020s0073 Marchantia polymorpha HOM05D004337 ORTHO05D005422 1.0e-233 813.5 563 70.2
SMO116G0204 Selaginella moellendorffii HOM05D004337 ORTHO05D005422 9.8e-232 807.0 563 70.0
vmacro12739 Vaccinium macrocarpon HOM05D004337 ORTHO05D005422 1.5e-227 793.1 929 49.1
AL6G18970 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 8.9e-225 783.9 868 50.1
Pp3c5_10010 Physcomitrium patens HOM05D004337 ORTHO05D005422 1.2e-208 730.3 583 62.4
Duzib264G1201 Durio zibethinus HOM05D004337 ORTHO05D005422 3.4e-208 728.8 573 63.7
Gohir.D12G002000 Gossypium hirsutum HOM05D004337 ORTHO05D005422 1.2e-205 720.3 572 62.6
Ah.06g188230 Amaranthus hybridus HOM05D004337 ORTHO05D005422 3.5e-205 718.8 514 70.4
Cc00_g00820 Coffea canephora HOM05D004337 ORTHO05D005422 2.7e-197 692.6 395 84.6
CBR_g44530 Chara braunii HOM05D004337 ORTHO05D005422 1.4e-193 680.2 562 58.9
CDE05G2996 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 1.8e-193 679.9 426 74.9
Haze_19353 Corylus avellana HOM05D004337 ORTHO05D005422 3.0e-172 609.4 342 87.1
AL6G18990 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.3e-164 583.2 436 68.3
SHI38349 Sapria himalayana HOM05D004337 ORTHO05D005422 7.2e-158 561.6 426 69.2
Cre09.g397900 Chlamydomonas reinhardtii HOM05D004337 ORTHO05D005422 1.7e-154 550.4 586 48.3
ClCG04G002690 Citrullus lanatus HOM05D004337 ORTHO05D005422 1.2e-144 517.7 311 84.2
AL6G19200 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 5.2e-132 475.7 447 60.0
MCO10G243 Micromonas commoda HOM05D004337 ORTHO05D005422 8.0e-117 425.2 354 57.9
Haze_27034 Corylus avellana HOM05D004337 ORTHO05D005422 3.2e-97 360.1 460 41.7
PRCOL_00006172 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 1.2e-96 358.2 486 40.1
Cfa024513 Carpinus fangiana HOM05D004337 ORTHO05D005422 2.3e-95 354.0 560 36.2
Cpa.g.sc3593.1 Carica papaya HOM05D004337 ORTHO05D005422 2.6e-91 340.5 188 90.4
Cpa.g.sc138.38 Carica papaya HOM05D004337 ORTHO05D005422 2.0e-83 314.3 236 66.5
Haze_19352 Corylus avellana HOM05D004337 ORTHO05D005422 1.4e-76 291.6 203 63.5
MCO07G426 Micromonas commoda HOM05D004337 ORTHO05D005422 3.8e-74 283.5 602 31.9
AL6G19020 Arabidopsis lyrata HOM05D004337 ORTHO05D005422 2.1e-72 277.7 213 64.3
SalBow8G1257 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.1e-69 267.7 213 63.4
SalBow8G3722 Salvia bowleyana HOM05D004337 ORTHO05D005422 2.1e-69 267.7 213 63.4
PRCOL_00005640 Prasinoderma coloniale HOM05D004337 ORTHO05D005422 2.4e-65 254.2 365 36.7
Cc00_g00810 Coffea canephora HOM05D004337 ORTHO05D005422 1.8e-63 248.1 168 67.9
ClCG04G002680 Citrullus lanatus HOM05D004337 ORTHO05D005422 5.1e-63 246.5 164 69.5
HPP92_009290 Vanilla planifolia HOM05D004337 ORTHO05D005422 1.9e-54 218.0 226 53.1
CDE05G3583 Ceratophyllum demersum HOM05D004337 ORTHO05D005422 3.4e-43 180.6 113 80.5
Hma1.2p1_0641F.1_g194250 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 3.9e-31 140.6 72 94.4
Psat3g077400 Pisum sativum HOM05D004337 ORTHO05D005422 2.2e-29 134.8 117 62.4
BcaC04g21668 Brassica carinata HOM05D004337 ORTHO05D021976 6.1e-24 116.7 73 69.9
C09p29160 Brassica napus HOM05D004337 ORTHO05D021976 1.0e-23 115.9 69 72.5
Hma1.2p1_0641F.1_g194230 Hydrangea macrophylla HOM05D004337 ORTHO05D005422 6.8e-15 86.7 108 48.1
SEGI_12766 Sequoiadendron giganteum HOM05D004337 ORTHO05D005422 3.4e-14 84.3 60 66.7
AUR62044487 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.7e-13 82.0 45 75.6
AUR62044516 Chenopodium quinoa HOM05D004337 ORTHO05D021976 1.7e-13 82.0 45 75.6
SHI11402 Sapria himalayana HOM05D000039 ORTHO05D006865 1.4e-12 79.0 48 68.8
CDE05G0837 Ceratophyllum demersum HOM05D004337 ORTHO05D043897 3.1e-12 77.8 69 53.6
AUR62038356 Chenopodium quinoa HOM05D001477 ORTHO05D021976 5.9e-11 73.6 43 72.1


User provided reference genes

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