Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1991.5 991 100.0
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1187.6 1002 63.0
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1177.5 970 63.8
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1167.5 1001 61.3
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1157.5 967 62.2
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 1006 59.4
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 969 62.6
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1153.7 975 60.5
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1150.2 967 62.0
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1148.3 1006 59.1
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1146.0 1006 59.0
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1142.9 971 62.3
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1141.3 962 61.1
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1140.9 1013 60.6
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1139.0 963 60.6
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1137.5 974 60.1
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 990 61.4
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1136.7 953 61.1
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1135.6 983 60.6
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1132.1 985 61.1
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 978 60.8
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1125.2 973 61.7
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1120.5 963 61.8
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1119.4 953 61.7
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 964 61.8
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1116.7 953 60.8
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 963 60.0
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 963 60.7
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 959 60.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1109.4 947 60.6
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 977 60.4
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 960 59.9
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1107.8 959 60.4
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1105.1 963 59.6
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 963 60.5
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 983 58.8
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1100.5 940 60.2
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1093.2 970 59.9
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1092.8 1014 57.6
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 955 59.9
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1090.9 947 60.1
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1090.1 944 60.0
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 969 59.5
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1088.2 964 59.8
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1087.8 960 58.1
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1084.3 966 59.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1080.1 952 59.1
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1079.7 959 58.7
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 946 60.5
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1078.9 962 58.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 958 57.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1075.8 1052 55.0
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1075.1 941 59.0
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 6.8e-312 1074.7 953 59.0
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 2.7e-311 1072.0 971 57.8
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 4.7e-311 1071.2 929 59.8
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.9e-310 1068.1 937 59.2
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 5.2e-310 1067.8 980 56.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 8.7e-310 1067.0 968 58.3
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 7.4e-309 1063.9 981 57.3
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 2.2e-308 1062.4 957 57.5
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 6.3e-308 1060.8 1012 55.9
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 8.2e-308 1060.4 968 58.0
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 8.2e-308 1060.4 968 58.0
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 1.8e-307 1059.3 985 57.4
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 3.1e-307 1058.5 967 57.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 9.1e-307 1057.0 962 57.0
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 1.2e-306 1056.6 978 56.3
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 2.0e-306 1055.8 962 58.3
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 2.6e-306 1055.4 977 57.4
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 3.8e-305 1051.6 965 57.6
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 3.8e-305 1051.6 1021 55.3
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 7.2e-304 1047.3 973 56.6
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 7.2e-304 1047.3 971 57.8
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 7.2e-304 1047.3 942 57.9
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 1.4e-302 1043.1 965 57.6
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.0e-301 1039.3 1057 53.7
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.3e-301 1038.5 883 62.5
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 4.4e-301 1038.1 945 57.8
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 1.4e-299 1033.1 955 56.4
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 2.4e-299 1032.3 972 56.1
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 2.4e-299 1032.3 1034 55.1
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 4.1e-299 1031.6 973 56.1
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 1.5e-298 1029.6 932 59.5
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.5e-298 1029.6 932 59.9
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 3.8e-297 1025.0 936 58.5
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 1.1e-296 1023.5 996 55.5
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 6.1e-295 1017.7 1057 52.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 7.9e-295 1017.3 1010 54.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 2.3e-294 1015.8 959 56.1
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 2.3e-294 1015.8 959 56.1
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.5e-293 1013.1 963 54.9
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.3e-292 1010.0 984 54.9
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 8.2e-292 1007.3 1090 53.5
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 1.6e-290 1003.0 991 53.7
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.6e-290 1003.0 977 53.8
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.9e-289 998.8 1076 52.6
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.1e-288 996.9 960 54.3
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.6e-285 985.7 962 55.5
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.6e-282 976.5 966 54.7
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.5e-282 974.9 890 57.2
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 7.7e-282 974.2 961 53.6
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.0e-281 973.8 960 55.2
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 1.3e-281 973.4 876 59.7
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 1.8e-278 963.0 889 57.7
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 4.0e-278 961.8 1205 48.0
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.8e-278 961.1 1001 54.3
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 1.1e-275 953.7 979 55.1
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.5e-274 948.3 918 55.7
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 4.7e-271 938.3 836 58.1
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.1e-264 917.1 826 59.0
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.9e-264 916.4 997 51.0
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 9.5e-256 887.5 892 53.0
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 5.4e-251 871.7 868 53.6
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 1.2e-250 870.5 1114 44.9
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 4.7e-247 858.6 786 57.5
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 1.4e-243 847.0 955 50.5
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.7e-242 842.8 943 50.6
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.1e-241 838.6 719 62.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 2.3e-233 813.1 811 53.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.6e-207 727.2 750 52.5
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.1e-202 710.3 689 56.6
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 1.4e-185 654.4 664 54.4
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 3.0e-185 653.3 953 43.1
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 5.9e-181 639.0 414 76.3
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.1e-166 590.1 772 45.1
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.4e-153 548.1 378 73.0
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.4e-152 543.5 424 67.2
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 3.8e-148 530.0 404 68.1
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.9e-134 484.6 498 54.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 6.2e-130 469.5 569 47.3
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.7e-127 460.3 294 75.5
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.6e-120 436.0 735 39.7
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 2.8e-114 417.5 284 71.5
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 1.4e-113 415.2 655 41.2
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 1.8e-113 414.8 295 67.1
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 6.9e-105 386.3 458 46.3
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 2.7e-101 374.4 340 57.1
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 7.1e-94 349.7 293 56.7
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 1.8e-84 318.5 219 72.6
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 4.5e-56 224.2 214 54.7
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 2.1e-53 215.3 150 70.7
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 2.9e-47 194.9 120 79.2
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.0e-44 186.4 148 56.1
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.3e-34 152.9 124 58.9
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 1.1e-33 149.8 91 76.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 1.4e-33 149.4 128 54.7
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 5.9e-32 144.1 76 89.5
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 9.5e-30 136.7 86 73.3
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.0e-28 133.3 117 57.3
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.8e-24 117.1 312 35.6
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.3e-15 89.7 82 59.8
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 2.5e-14 85.5 267 30.0
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 2.1e-13 82.4 52 71.2
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 2.8e-13 82.0 160 36.2
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 3.6e-13 81.6 46 82.6
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 4.4e-11 74.7 52 61.5
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 7.6e-11 73.9 129 34.9
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.1e-09 70.1 62 56.5
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.6e-08 66.2 70 48.6
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 6.0e-08 64.3 68 50.0
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 7.8e-08 63.9 52 61.5
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.0e-07 63.5 50 56.0
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.3e-07 62.4 53 56.6
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.3e-07 62.4 53 56.6
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.3e-07 62.4 35 71.4
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 8.6e-07 60.5 53 56.6


User provided reference genes

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