Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1057G001 Amborella trichopoda HOM05D003793 ORTHO05D038313 3.8e-34 147.5 71 100.0
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 4.3e-25 117.5 56 100.0
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 5.4e-20 100.5 69 69.6
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 2.7e-19 98.2 56 78.6
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 4.6e-19 97.4 57 77.2
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 1.0e-18 96.3 57 77.2
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.0e-18 96.3 57 78.9
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.0e-18 96.3 57 78.9
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 1.3e-18 95.9 57 75.4
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 2.3e-18 95.1 57 75.4
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 3.9e-18 94.4 57 75.4
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 6.6e-18 93.6 69 63.8
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 6.6e-18 93.6 69 65.2
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 1.5e-17 92.4 56 75.0
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.5e-17 92.4 55 76.4
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 4.3e-17 90.9 56 75.0
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 4.3e-17 90.9 57 70.2
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 4.3e-17 90.9 57 73.7
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 5.6e-17 90.5 57 73.7
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 5.6e-17 90.5 57 73.7
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 5.6e-17 90.5 69 66.7
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 7.3e-17 90.1 57 71.9
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 7.3e-17 90.1 58 70.7
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 7.3e-17 90.1 57 71.9
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 9.5e-17 89.7 57 71.9
Medtr4g036005 Medicago truncatula HOM05D003793 ORTHO05D004471 9.5e-17 89.7 57 70.2
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 9.5e-17 89.7 69 62.3
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 9.5e-17 89.7 56 71.4
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 9.5e-17 89.7 56 71.4
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 9.5e-17 89.7 57 73.7
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.2e-16 89.4 66 65.2
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 1.2e-16 89.4 57 71.9
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 1.2e-16 89.4 56 73.2
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 1.2e-16 89.4 57 71.9
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 1.2e-16 89.4 57 71.9
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 1.2e-16 89.4 57 71.9
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.6e-16 89.0 57 71.9
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 1.6e-16 89.0 57 70.2
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 1.6e-16 89.0 57 71.9
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 2.1e-16 88.6 60 70.0
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 2.8e-16 88.2 57 68.4
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 2.8e-16 88.2 57 71.9
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 3.6e-16 87.8 57 70.2
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 3.6e-16 87.8 55 72.7
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 3.6e-16 87.8 57 71.9
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 3.6e-16 87.8 69 60.9
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 3.6e-16 87.8 69 60.9
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 4.7e-16 87.4 57 70.2
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.7e-16 87.4 60 68.3
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 6.2e-16 87.0 57 68.4
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 8.1e-16 86.7 57 70.2
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 8.1e-16 86.7 57 70.2
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 8.1e-16 86.7 56 66.1
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 8.1e-16 86.7 57 66.7
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 8.1e-16 86.7 54 74.1
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 1.1e-15 86.3 52 73.1
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 1.1e-15 86.3 57 68.4
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 1.1e-15 86.3 60 66.7
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 1.1e-15 86.3 57 70.2
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.1e-15 86.3 57 71.9
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 1.4e-15 85.9 64 64.1
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 1.4e-15 85.9 57 70.2
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 1.4e-15 85.9 57 68.4
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.4e-15 85.9 57 70.2
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 1.4e-15 85.9 57 66.7
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 1.8e-15 85.5 68 61.8
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 1.8e-15 85.5 57 68.4
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 1.8e-15 85.5 57 68.4
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 2.3e-15 85.1 57 66.7
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 2.3e-15 85.1 57 68.4
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 2.3e-15 85.1 50 78.0
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 2.3e-15 85.1 57 68.4
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 3.1e-15 84.7 57 68.4
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 3.1e-15 84.7 57 66.7
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 3.1e-15 84.7 57 68.4
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 4.0e-15 84.3 57 66.7
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 4.0e-15 84.3 57 70.2
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 4.0e-15 84.3 57 70.2
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 4.0e-15 84.3 56 69.6
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 5.2e-15 84.0 56 71.4
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 5.2e-15 84.0 57 68.4
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 5.2e-15 84.0 57 68.4
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 5.2e-15 84.0 60 66.7
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 6.8e-15 83.6 56 71.4
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 6.8e-15 83.6 56 71.4
Nitab4.5_0006250g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 6.8e-15 83.6 56 69.6
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 6.8e-15 83.6 57 68.4
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 8.9e-15 83.2 57 66.7
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 8.9e-15 83.2 57 66.7
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 8.9e-15 83.2 57 68.4
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 8.9e-15 83.2 49 77.6
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 8.9e-15 83.2 57 70.2
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 1.2e-14 82.8 49 79.6
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 1.2e-14 82.8 57 66.7
SalBow3G2197 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.2e-14 82.8 57 70.2
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 1.2e-14 82.8 57 68.4
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.5e-14 82.4 69 59.4
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 1.5e-14 82.4 48 79.2
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 1.5e-14 82.4 50 76.0
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.5e-14 82.4 50 76.0
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 1.5e-14 82.4 50 76.0
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 1.5e-14 82.4 55 67.3
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 1.5e-14 82.4 51 74.5
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 2.0e-14 82.0 57 68.4
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 2.0e-14 82.0 56 67.9
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 2.0e-14 82.0 57 66.7
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 2.0e-14 82.0 57 68.4
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 2.6e-14 81.6 57 64.9
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 2.6e-14 81.6 69 58.0
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 3.4e-14 81.3 54 68.5
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 3.4e-14 81.3 50 74.0
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 3.4e-14 81.3 57 70.2
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 3.4e-14 81.3 57 66.7
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 4.4e-14 80.9 57 66.7
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 4.4e-14 80.9 56 66.1
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 5.8e-14 80.5 57 63.2
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 5.8e-14 80.5 49 77.6
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 5.8e-14 80.5 48 77.1
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 7.5e-14 80.1 53 67.9
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 7.5e-14 80.1 54 66.7
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 1.3e-13 79.3 51 70.6
Cc00_g27150 Coffea canephora HOM05D003793 ORTHO05D004471 1.7e-13 79.0 57 61.4
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 2.2e-13 78.6 60 60.0
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 2.9e-13 78.2 51 72.5
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 6.4e-13 77.0 56 60.7
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 6.4e-13 77.0 57 59.6
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 6.4e-13 77.0 56 62.5
CSS0037165 Camellia sinensis var. sinensis HOM05D003793 ORTHO05D004471 8.3e-13 76.6 54 63.0
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 1.1e-12 76.3 57 63.2
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 2.4e-12 75.1 56 62.5
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 3.2e-12 74.7 56 60.7
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 4.1e-12 74.3 57 59.6
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 1.2e-11 72.8 49 73.5
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 2.1e-11 72.0 64 56.2
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 6.0e-11 70.5 57 56.1
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.3e-10 69.3 69 50.7
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.3e-10 69.3 69 50.7
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.3e-10 68.6 57 56.1
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.1e-09 66.2 57 54.4
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.1e-09 66.2 69 49.3
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.5e-09 65.9 52 57.7
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 2.5e-09 65.1 51 56.9
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 4.3e-09 64.3 61 52.5
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 1.6e-08 62.4 49 59.2
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 1.1e-07 59.7 60 46.7
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 1.4e-07 59.3 42 71.4
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 2.4e-07 58.5 65 47.7
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 1.5e-06 55.8 67 43.3
RcHm_v2.0_Chr5g0034841 Rosa chinensis HOM05D003793 ORTHO05D038313 9.9e-06 53.1 29 82.8


User provided reference genes

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