Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR1011G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 4.3e-28 127.1 57 100.0
ATR0350G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 5.8e-25 116.7 57 89.5
ATR0785G001 Amborella trichopoda HOM05D005130 ORTHO05D006185 1.1e-18 95.9 46 93.5
MBI07_g11727_MAGBIO Magnolia biondii HOM05D005130 ORTHO05D006185 3.4e-09 64.3 35 80.0
ClCG01G000850 Citrullus lanatus HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 77.1
Cc02_g02200 Coffea canephora HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 80.0
MELO3C005845.2 Cucumis melo HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 77.1
CsaV3_5G000990 Cucumis sativus L. HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 77.1
Migut.F01073 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 80.0
Migut.F01076 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 80.0
Migut.F01078 Erythranthe guttata HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 80.0
Sed0013201 Sechium edule HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 77.1
Sed0017713 Sechium edule HOM05D005130 ORTHO05D006185 1.0e-08 62.8 35 77.1
PSO339G0178 Papaver somniferum HOM05D005130 ORTHO05D006185 1.3e-08 62.4 35 80.0
PSO384G1339 Papaver somniferum HOM05D005130 ORTHO05D006185 1.3e-08 62.4 35 80.0
Eucgr.H03364 Eucalyptus grandis HOM05D005130 ORTHO05D006185 1.7e-08 62.0 38 71.1
PSO063G0462 Papaver somniferum HOM05D005130 ORTHO05D006185 1.7e-08 62.0 35 80.0
PSO782G0039 Papaver somniferum HOM05D005130 ORTHO05D006185 1.7e-08 62.0 35 80.0
CAN.G126.18 Capsicum annuum HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
CAN.G126.9 Capsicum annuum HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
Nitab4.5_0000472g0310 Nicotiana tabacum HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
Nitab4.5_0006023g0030 Nicotiana tabacum HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
Peaxi162Scf00057g00141 Petunia axillaris HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
Solyc03g007680.3 Solanum lycopersicum HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
Sopen03g003610 Solanum pennellii HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
PGSC0003DMG400020885 Solanum tuberosum HOM05D005130 ORTHO05D006185 2.2e-08 61.6 35 77.1
CDE02G1119 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 2.9e-08 61.2 35 77.1
CDE09G0886 Ceratophyllum demersum HOM05D005130 ORTHO05D006185 2.9e-08 61.2 35 77.1
Aqoxy2G00239 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 3.8e-08 60.8 35 77.1
MSTRG.27076 Avicennia marina HOM05D005130 ORTHO05D006185 3.8e-08 60.8 35 77.1
Eucgr.H03367 Eucalyptus grandis HOM05D005130 ORTHO05D006185 5.0e-08 60.5 35 74.3
Eucgr.K02181 Eucalyptus grandis HOM05D005130 ORTHO05D006185 5.0e-08 60.5 35 74.3
PGR142G1248 Punica granatum HOM05D005130 ORTHO05D006185 5.0e-08 60.5 35 74.3
Lj1A1007T60 Lonicera japonica HOM05D005130 ORTHO05D006185 6.5e-08 60.1 36 75.0
Aqoxy3G03172 Aquilegia oxysepala HOM05D005130 ORTHO05D006185 8.5e-08 59.7 35 74.3
Nn1g08437 Nelumbo nucifera HOM05D005130 ORTHO05D006185 8.5e-08 59.7 35 74.3
SalBow2G0720 Salvia bowleyana HOM05D005130 ORTHO05D006185 8.5e-08 59.7 35 77.1
SGA_v2.0_scaffold10G05277 Striga asiatica HOM05D005130 ORTHO05D006185 8.5e-08 59.7 35 77.1
SGA_v2.0_scaffold52G19001 Striga asiatica HOM05D005130 ORTHO05D006185 8.5e-08 59.7 35 77.1
TAR374G0198 Trochodendron aralioides HOM05D002676 ORTHO05D006185 8.5e-08 59.7 35 74.3
BcaC08g43289 Brassica carinata HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
A06p02630 Brassica napus HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
C06p06390 Brassica napus HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
BolC6t35749H Brassica oleracea HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
BraA06t23471Z Brassica rapa HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Duzib068G1086 Durio zibethinus HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Duzib205G1022 Durio zibethinus HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Gohir.A11G012900 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Gohir.D11G013200 Gossypium hirsutum HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Gorai.007G013500 Gossypium raimondii HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Thecc.03G186500 Theobroma cacao HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
unitig_0.g1157 Utricularia gibba HOM05D005130 ORTHO05D006185 1.1e-07 59.3 35 74.3
Aa31LG10G3450 Aethionema arabicum HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
AL1G58970 Arabidopsis lyrata HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
AT1G51160 Arabidopsis thaliana HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
BcaB04g17207 Brassica carinata HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
BcaB07g33563 Brassica carinata HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
BcaC01g01270 Brassica carinata HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
A08p02830 Brassica napus HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
BolC3t21323H Brassica oleracea HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
BraA08t32317Z Brassica rapa HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
CARHR041190 Cardamine hirsuta HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
COL.COLO4_30286 Corchorus olitorius HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
Thhalv10011827m.g Eutrema salsugineum HOM05D005130 ORTHO05D006185 1.4e-07 58.9 34 76.5
TWI23G0534 Tripterygium wilfordii HOM05D005130 ORTHO05D006185 1.4e-07 58.9 35 74.3
COL.COLO4_25325 Corchorus olitorius HOM05D005130 ORTHO05D006185 1.9e-07 58.5 34 76.5
Dinv35271 Davidia involucrata HOM05D005130 ORTHO05D006185 1.9e-07 58.5 35 74.3
Dinv28376 Davidia involucrata HOM05D005130 ORTHO05D006185 2.5e-07 58.2 34 76.5
Phvul.002G057700 Phaseolus vulgaris HOM05D005130 ORTHO05D006185 2.5e-07 58.2 39 66.7
VMungo1215G2319 Vigna mungo HOM05D005130 ORTHO05D006185 2.5e-07 58.2 39 66.7
Glyma.01G208400 Glycine max HOM05D005130 ORTHO05D006185 3.2e-07 57.8 39 66.7
arahy.Tifrunner.gnm1.ann1.0TLK73 Arachis hypogaea HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
arahy.Tifrunner.gnm1.ann1.3XEJ8W Arachis hypogaea HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
arahy.Tifrunner.gnm1.ann1.9NW0T0 Arachis hypogaea HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
arahy.Tifrunner.gnm1.ann1.J4ANAZ Arachis hypogaea HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
arahy.Tifrunner.gnm1.ann1.Q25QIN Arachis hypogaea HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
CANSAT56G3795 Cannabis sativa HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
Cpa.g.sc3.2 Carica papaya HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 74.3
DCAR_020276 Daucus carota HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
Gorai.003G070000 Gossypium raimondii HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
Lsat_1_v5_gn_8_6421 Lactuca sativa HOM05D005130 ORTHO05D006185 4.2e-07 57.4 39 66.7
Lj3C917T6 Lonicera japonica HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
Lj1g0003335 Lotus japonicus HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
Lalb_Chr03g0035011 Lupinus albus HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
GSVIVG01028813001 Vitis vinifera HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 71.4
Zm00001eb052510 Zea mays HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 68.6
Zm00001eb217960 Zea mays HOM05D005130 ORTHO05D006185 4.2e-07 57.4 35 68.6
AagrBONN_evm.TU.Sc2ySwM_362.2738 Anthoceros agrestis HOM05D005130 ORTHO05D006185 5.5e-07 57.0 33 78.8
Hma1.2p1_0327F.1_g126520 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 5.5e-07 57.0 34 73.5
MD07G1280700 Malus domestica HOM05D005130 ORTHO05D006185 5.5e-07 57.0 40 62.5
HanXRQChr13g0392411 Helianthus annuus HOM05D005130 ORTHO05D006185 7.2e-07 56.6 35 71.4
Lalb_Chr19g0130471 Lupinus albus HOM05D005130 ORTHO05D006185 7.2e-07 56.6 35 71.4
Atru.ctg97_1.50 Acer truncatum HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Actinidia03144 Actinidia chinensis HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
CSS0002576 Camellia sinensis var. sinensis HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Cfa008547 Carpinus fangiana HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
CiPaw.06G004500 Carya illinoinensis HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
CBR_g12583 Chara braunii HOM05D005130 ORTHO05D006185 9.4e-07 56.2 34 73.5
Ca_18032_v3 Cicer arietinum L. HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Haze_11084 Corylus avellana HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
ECA233G2204 Erigeron canadensis HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
FvH4_7g30501 Fragaria vesca HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
FAN10G0131 Fragaria x ananassa HOM05D001916 ORTHO05D003272 9.4e-07 56.2 35 71.4
FAN10G0799 Fragaria x ananassa HOM05D001916 ORTHO05D003272 9.4e-07 56.2 35 71.4
MD01G1210500 Malus domestica HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Manes.14G020900 Manihot esculenta HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Medtr4g048530 Medicago truncatula HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Psat7g198120 Pisum sativum HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Potri.017G149900 Populus trichocarpa HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Prupe.2G302900 Prunus persica HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
QL09p012297 Quercus lobata HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Rhsim09G0201300 Rhododendron simsii HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
RcHm_v2.0_Chr1g0378911 Rosa chinensis HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
Sabra17G0124800 Salix brachista HOM05D005130 ORTHO05D006185 9.4e-07 56.2 35 71.4
SEGI_19211 Sequoiadendron giganteum HOM05D005130 ORTHO05D006185 9.4e-07 56.2 34 73.5
Carub.0001s4007 Capsella rubella HOM05D005130 ORTHO05D006185 1.2e-06 55.8 34 73.5
Medtr8g095450 Medicago truncatula HOM05D005130 ORTHO05D006185 1.2e-06 55.8 35 68.6
THA.LOC104816907 Tarenaya hassleriana HOM05D005130 ORTHO05D006185 1.2e-06 55.8 34 73.5
BcaC01g01491 Brassica carinata HOM05D005130 ORTHO05D006185 2.1e-06 55.1 34 73.5
Hma1.2p1_1713F.1_g298920 Hydrangea macrophylla HOM05D005130 ORTHO05D006185 2.1e-06 55.1 35 68.6
HPP92_005259 Vanilla planifolia HOM05D005130 ORTHO05D006185 2.1e-06 55.1 35 68.6
Glyma.11G033800 Glycine max HOM05D005130 ORTHO05D006185 2.7e-06 54.7 39 64.1
Mapoly0052s0059 Marchantia polymorpha HOM05D005130 ORTHO05D006185 3.6e-06 54.3 36 69.4
Os01g0513700 Oryza sativa ssp. japonica HOM05D005130 ORTHO05D006185 3.6e-06 54.3 35 65.7
vmacro09813 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 3.6e-06 54.3 34 70.6
vmacro15551 Vaccinium macrocarpon HOM05D005130 ORTHO05D006185 3.6e-06 54.3 35 68.6
GSVIVG01038576001 Vitis vinifera HOM05D005130 ORTHO05D006185 3.6e-06 54.3 35 68.6
Hund27400 Selenicereus undatus HOM05D005130 ORTHO05D006185 6.1e-06 53.5 34 70.6
Ciclev10006067m.g Citrus clementina HOM05D005130 ORTHO05D006185 7.9e-06 53.1 48 54.2
Sc13g0009310 Simmondsia chinensis HOM05D005130 ORTHO05D006185 7.9e-06 53.1 35 68.6


User provided reference genes

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