Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0994G014 Amborella trichopoda HOM05D000702 ORTHO05D066093 5.8e-43 177.2 91 100.0
ATR0994G015 Amborella trichopoda HOM05D000702 ORTHO05D001396 4.3e-30 134.4 87 82.8
ATR0994G007 Amborella trichopoda HOM05D000702 ORTHO05D026509 4.3e-22 107.8 72 83.3
Nn5g28413 Nelumbo nucifera HOM05D000702 ORTHO05D001396 6.5e-18 94.0 90 57.8
PSO528G0117 Papaver somniferum HOM05D000702 ORTHO05D001396 7.2e-17 90.5 88 60.2
HPP92_002008 Vanilla planifolia HOM05D000702 ORTHO05D001396 9.3e-17 90.1 89 59.6
Aqoxy6G00266 Aquilegia oxysepala HOM05D000702 ORTHO05D001396 2.1e-16 89.0 85 58.8
Migut.C01052 Erythranthe guttata HOM05D000702 ORTHO05D001396 2.7e-16 88.6 89 55.1
PSO170G2653 Papaver somniferum HOM05D000702 ORTHO05D001396 2.7e-16 88.6 88 58.0
Manes.18G080100 Manihot esculenta HOM05D000702 ORTHO05D001396 3.6e-16 88.2 90 55.6
CSS0007121 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 4.6e-16 87.8 86 55.8
CSS0046035 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 4.6e-16 87.8 86 55.8
MBI06_g35529_MAGBIO Magnolia biondii HOM05D000702 ORTHO05D001396 4.6e-16 87.8 91 57.1
Oeu021880.1 Olea europaea HOM05D000702 ORTHO05D001396 4.6e-16 87.8 90 54.4
Peaxi162Scf00310g00044 Petunia axillaris HOM05D000702 ORTHO05D001396 4.6e-16 87.8 85 55.3
Duzib041G0663 Durio zibethinus HOM05D000702 ORTHO05D001396 6.1e-16 87.4 90 56.7
HanXRQChr05g0149131 Helianthus annuus HOM05D000702 ORTHO05D001396 7.9e-16 87.0 89 56.2
QL09p033285 Quercus lobata HOM05D000702 ORTHO05D001396 7.9e-16 87.0 90 56.7
TPR.G13473 Trifolium pratense HOM05D000702 ORTHO05D001396 7.9e-16 87.0 88 58.0
TWI60G1507 Tripterygium wilfordii HOM05D000702 ORTHO05D001396 7.9e-16 87.0 92 55.4
CSS0046206 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 1.0e-15 86.7 92 54.3
Eucgr.F03813 Eucalyptus grandis HOM05D000702 ORTHO05D001396 1.0e-15 86.7 90 52.2
RcHm_v2.0_Chr6g0296361 Rosa chinensis HOM05D000702 ORTHO05D001396 1.0e-15 86.7 89 52.8
Hund30636 Selenicereus undatus HOM05D000702 ORTHO05D001396 1.0e-15 86.7 89 56.2
Hund30637 Selenicereus undatus HOM05D000702 ORTHO05D001396 1.0e-15 86.7 89 56.2
CiPaw.15G033900 Carya illinoinensis HOM05D000702 ORTHO05D001396 1.4e-15 86.3 86 54.7
CiPaw.16G025400 Carya illinoinensis HOM05D000702 ORTHO05D001396 1.4e-15 86.3 90 54.4
FvH4_2g27530 Fragaria vesca HOM05D000702 ORTHO05D001396 1.4e-15 86.3 87 56.3
FAN15G2252 Fragaria x ananassa HOM05D000702 ORTHO05D001396 1.4e-15 86.3 87 56.3
FAN20G1630 Fragaria x ananassa HOM05D000702 ORTHO05D001396 1.4e-15 86.3 87 56.3
Potri.002G080500 Populus trichocarpa HOM05D000702 ORTHO05D001396 1.4e-15 86.3 90 53.3
Ca_16593_v3 Cicer arietinum L. HOM05D000702 ORTHO05D001396 1.8e-15 85.9 88 56.8
Haze_17518 Corylus avellana HOM05D000702 ORTHO05D001396 1.8e-15 85.9 92 52.2
FAN24G2995 Fragaria x ananassa HOM05D000702 ORTHO05D001396 1.8e-15 85.9 86 55.8
ECA246G1119 Erigeron canadensis HOM05D000702 ORTHO05D001396 2.3e-15 85.5 90 51.1
FAN27G1905 Fragaria x ananassa HOM05D000702 ORTHO05D001396 2.3e-15 85.5 87 56.3
Gohir.D05G239300 Gossypium hirsutum HOM05D000702 ORTHO05D001396 2.3e-15 85.5 91 52.7
Psat5g085920 Pisum sativum HOM05D000702 ORTHO05D001396 2.3e-15 85.5 88 55.7
Potri.005G181000 Populus trichocarpa HOM05D000702 ORTHO05D001396 2.3e-15 85.5 90 54.4
PGR042G0155 Punica granatum HOM05D000702 ORTHO05D001396 2.3e-15 85.5 87 57.5
Potri.002G080400 Populus trichocarpa HOM05D000702 ORTHO05D001396 3.0e-15 85.1 91 58.2
Prupe.1G492500 Prunus persica HOM05D000702 ORTHO05D001396 3.0e-15 85.1 86 55.8
GSVIVG01008827001 Vitis vinifera HOM05D000702 ORTHO05D001396 3.0e-15 85.1 90 53.3
Gorai.009G248100 Gossypium raimondii HOM05D000702 ORTHO05D001396 3.9e-15 84.7 91 51.6
Lsat_1_v5_gn_6_97580 Lactuca sativa HOM05D000702 ORTHO05D001396 3.9e-15 84.7 89 50.6
QL09p033620 Quercus lobata HOM05D000702 ORTHO05D001396 3.9e-15 84.7 90 56.7
Solyc11g018530.2 Solanum lycopersicum HOM05D000702 ORTHO05D001396 3.9e-15 84.7 85 55.3
Sopen11g009480 Solanum pennellii HOM05D000702 ORTHO05D001396 3.9e-15 84.7 85 55.3
PSO063G1098 Papaver somniferum HOM05D000702 ORTHO05D001396 5.1e-15 84.3 88 56.8
VMungo1309G0181 Vigna mungo HOM05D000702 ORTHO05D001396 5.1e-15 84.3 83 60.2
Medtr3g088440 Medicago truncatula HOM05D000702 ORTHO05D001396 6.7e-15 84.0 88 54.5
PGR042G2229 Punica granatum HOM05D000702 ORTHO05D001396 6.7e-15 84.0 86 54.7
Thecc.08G130200 Theobroma cacao HOM05D000702 ORTHO05D001396 6.7e-15 84.0 92 52.2
Ciclev10000736m.g Citrus clementina HOM05D000702 ORTHO05D001396 8.8e-15 83.6 89 55.1
PGSC0003DMG400009247 Solanum tuberosum HOM05D000702 ORTHO05D001396 8.8e-15 83.6 85 55.3
Eucgr.F04336 Eucalyptus grandis HOM05D000702 ORTHO05D001396 1.1e-14 83.2 88 54.5
MD00G1030300 Malus domestica HOM05D000702 ORTHO05D001396 1.1e-14 83.2 86 53.5
MD14G1158400 Malus domestica HOM05D000702 ORTHO05D001396 1.1e-14 83.2 86 52.3
Nitab4.5_0005499g0010 Nicotiana tabacum HOM05D000702 ORTHO05D001396 1.1e-14 83.2 87 54.0
Psat5g085960 Pisum sativum HOM05D000702 ORTHO05D001396 1.1e-14 83.2 87 54.0
QL09p033470 Quercus lobata HOM05D000702 ORTHO05D001396 1.1e-14 83.2 90 54.4
Actinidia21300 Actinidia chinensis HOM05D000702 ORTHO05D001396 1.5e-14 82.8 92 51.1
Dinv14650 Davidia involucrata HOM05D000702 ORTHO05D001396 1.5e-14 82.8 90 54.4
Eucgr.L02462 Eucalyptus grandis HOM05D000702 ORTHO05D001396 1.5e-14 82.8 90 52.2
Glyma.06G115800 Glycine max HOM05D000702 ORTHO05D001396 1.5e-14 82.8 88 54.5
Medtr3g088460 Medicago truncatula HOM05D000702 ORTHO05D001396 1.5e-14 82.8 87 52.9
SalBow7G4285 Salvia bowleyana HOM05D000702 ORTHO05D001396 1.5e-14 82.8 87 56.3
HanXRQChr05g0149121 Helianthus annuus HOM05D000702 ORTHO05D001396 1.9e-14 82.4 89 55.1
Lsat_1_v5_gn_6_97121 Lactuca sativa HOM05D000702 ORTHO05D001396 1.9e-14 82.4 88 55.7
Lj1g0018073 Lotus japonicus HOM05D000702 ORTHO05D001396 1.9e-14 82.4 88 51.1
MD00G1042000 Malus domestica HOM05D000702 ORTHO05D001396 1.9e-14 82.4 86 51.2
Nitab4.5_0000111g0130 Nicotiana tabacum HOM05D000702 ORTHO05D001396 1.9e-14 82.4 87 54.0
Oeu059455.1 Olea europaea HOM05D000702 ORTHO05D001396 1.9e-14 82.4 96 50.0
Os07g0257200 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 1.9e-14 82.4 89 51.7
Eucgr.F04337 Eucalyptus grandis HOM05D000702 ORTHO05D001396 2.5e-14 82.0 90 52.2
Manes.18G080200 Manihot esculenta HOM05D000702 ORTHO05D001396 2.5e-14 82.0 93 52.7
QL09p033717 Quercus lobata HOM05D000702 ORTHO05D001396 2.5e-14 82.0 91 57.1
CAN.G1391.2 Capsicum annuum HOM05D000702 ORTHO05D001396 3.3e-14 81.6 85 54.1
Dinv27280 Davidia involucrata HOM05D000702 ORTHO05D001396 3.3e-14 81.6 90 54.4
Rhsim09G0015500 Rhododendron simsii HOM05D000702 ORTHO05D001396 3.3e-14 81.6 85 54.1
QL09p033501 Quercus lobata HOM05D000702 ORTHO05D001396 4.3e-14 81.3 90 53.3
Rhsim09G0015600 Rhododendron simsii HOM05D000702 ORTHO05D001396 4.3e-14 81.3 85 50.6
Sabra05G0136900 Salix brachista HOM05D000702 ORTHO05D001396 4.3e-14 81.3 90 50.0
Cpa.g.sc64.129 Carica papaya HOM05D000702 ORTHO05D001396 5.7e-14 80.9 87 54.0
Hma1.2p1_1765F.1_g301450 Hydrangea macrophylla HOM05D000702 ORTHO05D001396 5.7e-14 80.9 91 56.0
Thecc.08G129800 Theobroma cacao HOM05D000702 ORTHO05D001396 5.7e-14 80.9 92 50.0
ClCG08G005920 Citrullus lanatus HOM05D000702 ORTHO05D001396 7.4e-14 80.5 90 52.2
Hma1.2p1_0542F.1_g174960 Hydrangea macrophylla HOM05D000702 ORTHO05D001396 7.4e-14 80.5 92 52.2
Phvul.009G127900 Phaseolus vulgaris HOM05D000702 ORTHO05D001396 7.4e-14 80.5 86 55.8
Potri.005G181100 Populus trichocarpa HOM05D000702 ORTHO05D001396 7.4e-14 80.5 90 52.2
QL09p033526 Quercus lobata HOM05D000702 ORTHO05D001396 7.4e-14 80.5 90 53.3
Sabra02G0063000 Salix brachista HOM05D000702 ORTHO05D001396 7.4e-14 80.5 90 51.1
CAN.G1347.1 Capsicum annuum HOM05D000702 ORTHO05D001396 9.7e-14 80.1 85 52.9
Cfa018562 Carpinus fangiana HOM05D000702 ORTHO05D001396 9.7e-14 80.1 91 52.7
HanXRQChr05g0149111 Helianthus annuus HOM05D000702 ORTHO05D001396 9.7e-14 80.1 91 52.7
Lj1g0009373 Lotus japonicus HOM05D000702 ORTHO05D001396 9.7e-14 80.1 88 52.3
Sabra02G0062900 Salix brachista HOM05D000702 ORTHO05D001396 9.7e-14 80.1 88 55.7
Sabra05G0137000 Salix brachista HOM05D000702 ORTHO05D001396 9.7e-14 80.1 90 50.0
CSS0010095 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 1.3e-13 79.7 90 50.0
CSS0019007 Camellia sinensis var. sinensis HOM05D000702 ORTHO05D001396 1.3e-13 79.7 90 50.0
CsaV3_6G034190 Cucumis sativus L. HOM05D000702 ORTHO05D001396 1.3e-13 79.7 90 53.3
Rhsim09G0015700 Rhododendron simsii HOM05D000702 ORTHO05D001396 1.3e-13 79.7 85 51.8
Duzib041G0468 Durio zibethinus HOM05D000702 ORTHO05D001396 1.7e-13 79.3 92 51.1
Lj4C639T2 Lonicera japonica HOM05D000702 ORTHO05D001396 1.7e-13 79.3 87 51.7
Lj1g0005349 Lotus japonicus HOM05D000702 ORTHO05D001396 1.7e-13 79.3 87 54.0
Rhsim11G0070200 Rhododendron simsii HOM05D000702 ORTHO05D001396 1.7e-13 79.3 86 52.3
CANSAT25G1100 Cannabis sativa HOM05D000702 ORTHO05D001396 2.2e-13 79.0 87 54.0
Cc10_g12410 Coffea canephora HOM05D000702 ORTHO05D001396 2.2e-13 79.0 87 51.7
Rhsim09G0015800 Rhododendron simsii HOM05D000702 ORTHO05D001396 2.8e-13 78.6 85 52.9
Lj4A640G28 Lonicera japonica HOM05D000702 ORTHO05D001396 3.7e-13 78.2 89 50.6
Atru.chr13.1531 Acer truncatum HOM05D000702 ORTHO05D001396 4.8e-13 77.8 86 51.2
ECA246G2164 Erigeron canadensis HOM05D000702 ORTHO05D001396 4.8e-13 77.8 89 48.3
Lj4A644G6 Lonicera japonica HOM05D000702 ORTHO05D001396 4.8e-13 77.8 89 50.6
TAR381G0472 Trochodendron aralioides HOM05D000702 ORTHO05D001396 4.8e-13 77.8 89 48.3
arahy.Tifrunner.gnm1.ann1.KT6FMN Arachis hypogaea HOM05D000702 ORTHO05D001396 6.3e-13 77.4 89 53.9
arahy.Tifrunner.gnm1.ann1.XMF1GC Arachis hypogaea HOM05D000702 ORTHO05D001396 6.3e-13 77.4 89 53.9
Lj4g0011359 Lotus japonicus HOM05D000702 ORTHO05D001396 6.3e-13 77.4 88 52.3
Lalb_Chr08g0241251 Lupinus albus HOM05D000702 ORTHO05D001396 8.2e-13 77.0 83 55.4
unitig_52.g17219 Utricularia gibba HOM05D000702 ORTHO05D001396 1.1e-12 76.6 85 49.4
DCAR_016670 Daucus carota HOM05D000702 ORTHO05D001396 1.4e-12 76.3 87 48.3
PSO478G4966 Papaver somniferum HOM05D000702 ORTHO05D001396 1.4e-12 76.3 86 50.0
SGA_v2.0_scaffold52G18935 Striga asiatica HOM05D000702 ORTHO05D001396 1.4e-12 76.3 90 52.2
vmacro00853 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 1.4e-12 76.3 86 48.8
Hund26792 Selenicereus undatus HOM05D000702 ORTHO05D001396 4.1e-12 74.7 93 49.5
vmacro00669 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 4.1e-12 74.7 86 51.2
Lj4C640T5 Lonicera japonica HOM05D000702 ORTHO05D001396 5.3e-12 74.3 86 50.0
Lj4C643T3 Lonicera japonica HOM05D000702 ORTHO05D001396 5.3e-12 74.3 86 50.0
Aqoxy6G00511 Aquilegia oxysepala HOM05D000702 ORTHO05D001396 6.9e-12 73.9 85 48.2
MELO3C010638.2 Cucumis melo HOM05D000702 ORTHO05D001396 6.9e-12 73.9 90 52.2
DCAR_014378 Daucus carota HOM05D000702 ORTHO05D001396 6.9e-12 73.9 85 51.8
TPR.G13472 Trifolium pratense HOM05D000702 ORTHO05D001396 6.9e-12 73.9 88 53.4
vmacro00668 Vaccinium macrocarpon HOM05D000702 ORTHO05D001396 6.9e-12 73.9 85 47.1
arahy.Tifrunner.gnm1.ann1.PKRB70 Arachis hypogaea HOM05D000702 ORTHO05D001396 9.1e-12 73.6 89 52.8
MELO3C021848.2 Cucumis melo HOM05D000702 ORTHO05D001396 1.5e-11 72.8 90 51.1
Lj4A642T46 Lonicera japonica HOM05D000702 ORTHO05D001396 1.5e-11 72.8 87 49.4
Os02g0131800 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 1.5e-11 72.8 86 45.3
Lj4C642G17 Lonicera japonica HOM05D000702 ORTHO05D001396 2.0e-11 72.4 86 47.7
GSVIVG01008829001 Vitis vinifera HOM05D000702 ORTHO05D001396 5.9e-11 70.9 51 64.7
Aa31LG8G15380 Aethionema arabicum HOM05D000702 ORTHO05D001396 1.3e-10 69.7 57 57.9
Gohir.A06G046600 Gossypium hirsutum HOM05D000702 ORTHO05D001396 1.3e-10 69.7 51 66.7
Cc10_g12390 Coffea canephora HOM05D000702 ORTHO05D001396 1.7e-10 69.3 87 48.3
Atru.chr13.1529 Acer truncatum HOM05D000702 ORTHO05D001396 2.2e-10 68.9 81 50.6
Cc10_g12370 Coffea canephora HOM05D000702 ORTHO05D001396 2.9e-10 68.6 89 51.7
Gohir.D06G047000 Gossypium hirsutum HOM05D000702 ORTHO05D001396 3.8e-10 68.2 51 66.7
Gorai.010G052500 Gossypium raimondii HOM05D000702 ORTHO05D001396 3.8e-10 68.2 51 66.7
QL09p033246 Quercus lobata HOM05D000702 ORTHO05D001396 8.5e-10 67.0 79 49.4
EL10Ac5g11934 Beta vulgaris HOM05D000702 ORTHO05D001396 2.5e-09 65.5 83 42.2
Cpa.g.sc64.128 Carica papaya HOM05D000702 ORTHO05D001396 4.2e-09 64.7 47 63.8
SEGI_13084 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 9.4e-09 63.5 52 51.9
THA.LOC104806827 Tarenaya hassleriana HOM05D000702 ORTHO05D001396 1.2e-08 63.2 48 62.5
Lj4A638T13 Lonicera japonica HOM05D000702 ORTHO05D001396 1.6e-08 62.8 63 54.0
Lj4C646T8 Lonicera japonica HOM05D000702 ORTHO05D001396 1.6e-08 62.8 63 54.0
Lj7C345G10 Lonicera japonica HOM05D000702 ORTHO05D001396 2.1e-08 62.4 56 58.9
AUR62007406 Chenopodium quinoa HOM05D000702 ORTHO05D001396 2.7e-08 62.0 48 56.2
AUR62027326 Chenopodium quinoa HOM05D000702 ORTHO05D001396 3.6e-08 61.6 83 38.6
Gorai.013G043000 Gossypium raimondii HOM05D000702 ORTHO05D001396 3.6e-08 61.6 50 60.0
PGR044G0266 Punica granatum HOM05D000702 ORTHO05D001396 4.7e-08 61.2 48 60.4
MSTRG.1423 Avicennia marina HOM05D000702 ORTHO05D001396 7.9e-08 60.5 76 47.4
Gohir.D13G038250 Gossypium hirsutum HOM05D000702 ORTHO05D001396 7.9e-08 60.5 50 58.0
SEGI_26931 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 7.9e-08 60.5 47 57.4
Atru.chr13.1530 Acer truncatum HOM05D000702 ORTHO05D001396 1.4e-07 59.7 52 55.8
AUR62027327 Chenopodium quinoa HOM05D000702 ORTHO05D001396 1.8e-07 59.3 70 50.0
Gohir.D13G038301 Gossypium hirsutum HOM05D000702 ORTHO05D001396 5.1e-07 57.8 48 60.4
Os07g0258400 Oryza sativa ssp. japonica HOM05D000702 ORTHO05D001396 8.8e-07 57.0 65 49.2
Lsat_1_v5_gn_6_97101 Lactuca sativa HOM05D000702 ORTHO05D001396 1.1e-06 56.6 81 45.7
Zm00001eb231210 Zea mays HOM05D000702 ORTHO05D001396 2.0e-06 55.8 85 36.5
Gorai.013G042900 Gossypium raimondii HOM05D000702 ORTHO05D001396 3.3e-06 55.1 50 54.0
Manes.S092200 Manihot esculenta HOM05D000702 ORTHO05D001396 4.4e-06 54.7 90 42.2
SEGI_11476 Sequoiadendron giganteum HOM05D000702 ORTHO05D001396 7.4e-06 53.9 51 47.1
Zm00001eb097120 Zea mays HOM05D000702 ORTHO05D001396 7.4e-06 53.9 74 47.3


User provided reference genes

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