Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 2.9e-94 348.6 178 100.0
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 1.3e-62 243.4 178 69.7
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.5e-60 235.3 178 69.1
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 3.5e-60 235.3 178 68.0
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 2.3e-59 232.6 180 70.0
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 5.1e-59 231.5 178 71.3
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 8.7e-59 230.7 178 68.5
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 1.1e-58 230.3 178 68.0
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 1.5e-58 229.9 178 70.2
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 3.3e-58 228.8 179 71.5
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.6e-58 228.0 179 70.9
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 7.3e-58 227.6 180 68.3
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 9.6e-58 227.3 179 71.5
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.3e-57 226.9 180 68.3
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 1.6e-57 226.5 178 66.9
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 4.8e-57 224.9 179 68.7
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 4.8e-57 224.9 179 69.8
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 6.2e-57 224.6 179 68.7
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.2e-57 224.6 179 69.3
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 8.1e-57 224.2 179 68.7
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.1e-56 223.8 177 67.2
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 1.4e-56 223.4 178 68.5
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.4e-56 223.4 179 69.3
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 1.8e-56 223.0 178 70.2
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 1.8e-56 223.0 179 68.7
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 2.4e-56 222.6 179 68.2
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 2.4e-56 222.6 179 66.5
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 4.0e-56 221.9 179 68.7
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 5.3e-56 221.5 179 68.7
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 6.9e-56 221.1 178 67.4
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 6.9e-56 221.1 178 68.5
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 9.0e-56 220.7 178 66.9
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 9.0e-56 220.7 180 66.7
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.2e-55 220.3 179 68.7
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 1.5e-55 219.9 182 66.5
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.5e-55 219.9 179 69.3
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 2.0e-55 219.5 178 64.6
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 2.6e-55 219.2 178 66.3
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 2.6e-55 219.2 179 67.0
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 5.8e-55 218.0 186 67.2
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 7.6e-55 217.6 178 67.4
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 1.7e-54 216.5 182 67.0
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 2.2e-54 216.1 179 67.6
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 2.9e-54 215.7 179 66.5
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 3.8e-54 215.3 179 67.0
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 4.9e-54 214.9 177 65.5
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 8.4e-54 214.2 177 66.7
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 8.4e-54 214.2 178 65.2
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.1e-53 213.8 179 64.8
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 1.1e-53 213.8 178 66.3
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 1.1e-53 213.8 180 66.1
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 1.4e-53 213.4 178 65.2
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 1.4e-53 213.4 178 66.3
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 2.4e-53 212.6 178 64.6
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 4.2e-53 211.8 178 64.0
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 4.2e-53 211.8 181 64.6
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 7.1e-53 211.1 179 64.2
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 7.1e-53 211.1 178 64.6
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 7.1e-53 211.1 181 63.0
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 9.3e-53 210.7 179 66.5
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 9.3e-53 210.7 178 61.8
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.6e-52 209.9 178 66.3
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 1.6e-52 209.9 177 64.4
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 1.6e-52 209.9 178 64.6
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.6e-52 209.9 179 65.9
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 2.7e-52 209.1 181 66.9
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 3.5e-52 208.8 179 64.8
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 4.6e-52 208.4 179 65.9
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 6.0e-52 208.0 177 65.0
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 7.9e-52 207.6 179 63.7
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 1.0e-51 207.2 178 64.6
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 1.3e-51 206.8 180 62.8
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.3e-51 206.8 182 62.1
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.3e-51 206.8 182 62.1
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 1.3e-51 206.8 178 62.9
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 1.3e-51 206.8 178 62.9
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 3.0e-51 205.7 179 64.8
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 3.0e-51 205.7 179 63.7
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 3.9e-51 205.3 178 63.5
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 5.1e-51 204.9 184 62.5
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 8.7e-51 204.1 178 60.7
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 8.7e-51 204.1 178 62.4
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 8.7e-51 204.1 178 62.4
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 1.1e-50 203.8 178 63.5
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.1e-50 203.8 154 70.8
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 1.5e-50 203.4 178 62.9
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 1.9e-50 203.0 178 63.5
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 2.5e-50 202.6 178 62.9
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 3.3e-50 202.2 178 62.4
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 5.6e-50 201.4 178 61.8
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 7.4e-50 201.1 179 63.1
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 7.4e-50 201.1 179 63.1
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 9.6e-50 200.7 178 61.8
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 9.6e-50 200.7 178 62.4
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 9.6e-50 200.7 178 62.4
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 9.6e-50 200.7 178 62.9
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 1.3e-49 200.3 179 63.1
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 1.3e-49 200.3 176 61.4
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 2.1e-49 199.5 178 61.2
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 1.4e-48 196.8 178 61.2
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 1.8e-48 196.4 189 59.8
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 1.8e-48 196.4 178 61.8
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 1.8e-48 196.4 178 65.7
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 2.4e-48 196.1 178 61.2
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 4.0e-48 195.3 178 59.0
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 9.0e-48 194.1 179 60.3
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 4.5e-47 191.8 178 60.1
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 7.6e-47 191.0 119 78.2
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 9.9e-47 190.7 178 60.7
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 1.3e-46 190.3 184 59.2
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 1.1e-45 187.2 183 57.4
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 2.7e-44 182.6 138 66.7
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 1.3e-43 180.3 178 55.1
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 3.0e-43 179.1 182 57.7
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 5.1e-43 178.3 150 64.0
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 7.4e-42 174.5 149 70.5
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.6e-41 173.3 172 56.4
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 4.8e-41 171.8 149 68.5
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 1.2e-39 167.2 178 56.2
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 1.2e-39 167.2 178 56.2
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 6.5e-38 161.4 153 62.7
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 7.9e-36 154.5 148 63.5
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.3e-35 153.7 150 56.0
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 8.2e-33 144.4 82 78.0
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 3.4e-31 139.0 148 57.4
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 5.0e-30 135.2 148 56.1
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 2.5e-29 132.9 121 57.0
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 4.6e-28 128.6 75 77.3
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 2.3e-27 126.3 74 77.0
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 3.0e-27 125.9 72 79.2
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 5.1e-27 125.2 75 74.7
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 1.5e-26 123.6 132 60.6
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 6.3e-25 118.2 130 51.5
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 7.7e-23 111.3 179 44.7
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 6.5e-22 108.2 109 54.1
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 2.1e-20 103.2 101 59.4
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 3.0e-19 99.4 75 61.3
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 1.1e-16 90.9 107 54.2
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 2.6e-15 86.3 117 48.7
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 1.3e-14 84.0 132 43.2
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 2.2e-14 83.2 83 51.8
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 3.6e-12 75.9 114 52.6
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 1.4e-11 73.9 122 49.2
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 6.7e-11 71.6 114 51.8
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 9.1e-08 61.2 107 46.7
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 3.5e-07 59.3 30 76.7


User provided reference genes

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