Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0955G010 Amborella trichopoda HOM05D004892 ORTHO05D005818 2.3e-63 245.4 120 100.0
TAR374G1712 Trochodendron aralioides HOM05D004892 ORTHO05D005818 3.8e-34 148.3 107 66.4
EL10Ac5g12428 Beta vulgaris HOM05D004892 ORTHO05D005818 5.0e-34 147.9 107 65.4
Hund11347 Selenicereus undatus HOM05D004892 ORTHO05D005818 5.0e-34 147.9 107 66.4
Nn3g18808 Nelumbo nucifera HOM05D004892 ORTHO05D005818 6.5e-34 147.5 107 67.3
Ah.07g197980 Amaranthus hybridus HOM05D004892 ORTHO05D005818 1.9e-33 146.0 107 65.4
Duzib068G1057 Durio zibethinus HOM05D004892 ORTHO05D005818 2.5e-33 145.6 107 66.4
Thecc.03G221100 Theobroma cacao HOM05D004892 ORTHO05D005818 2.5e-33 145.6 107 66.4
CDE04G3418 Ceratophyllum demersum HOM05D004892 ORTHO05D005818 3.2e-33 145.2 107 64.5
AUR62019918 Chenopodium quinoa HOM05D004892 ORTHO05D005818 4.2e-33 144.8 107 63.6
AUR62007054 Chenopodium quinoa HOM05D004892 ORTHO05D005818 5.5e-33 144.4 107 62.6
Sc01g0010700 Simmondsia chinensis HOM05D004892 ORTHO05D005818 5.5e-33 144.4 107 64.5
Gohir.A09G188366 Gossypium hirsutum HOM05D004892 ORTHO05D005818 7.2e-33 144.1 107 62.6
Gohir.A12G240000 Gossypium hirsutum HOM05D004892 ORTHO05D005818 9.4e-33 143.7 107 64.5
Gohir.D09G183400 Gossypium hirsutum HOM05D004892 ORTHO05D005818 9.4e-33 143.7 107 62.6
Gohir.D12G241300 Gossypium hirsutum HOM05D004892 ORTHO05D005818 9.4e-33 143.7 107 64.5
Gorai.006G205800 Gossypium raimondii HOM05D004892 ORTHO05D005818 9.4e-33 143.7 107 62.6
Gorai.008G258500 Gossypium raimondii HOM05D004892 ORTHO05D005818 9.4e-33 143.7 107 64.5
MSTRG.13714 Avicennia marina HOM05D004892 ORTHO05D005818 1.2e-32 143.3 107 62.6
COL.COLO4_10796 Corchorus olitorius HOM05D004892 ORTHO05D005818 1.6e-32 142.9 107 62.6
Oeu013384.1 Olea europaea HOM05D004892 ORTHO05D005818 1.6e-32 142.9 107 62.6
Duzib205G1585 Durio zibethinus HOM05D004892 ORTHO05D005818 2.1e-32 142.5 107 64.5
PGR031G2034 Punica granatum HOM05D004892 ORTHO05D005818 2.1e-32 142.5 107 61.7
Sabra01G0060900 Salix brachista HOM05D004892 ORTHO05D005818 2.1e-32 142.5 107 62.6
MELO3C013774.2 Cucumis melo HOM05D004892 ORTHO05D005818 2.7e-32 142.1 107 64.5
Prupe.5G129800 Prunus persica HOM05D004892 ORTHO05D005818 2.7e-32 142.1 107 62.6
CsaV3_3G000880 Cucumis sativus L. HOM05D004892 ORTHO05D005818 3.6e-32 141.7 107 62.6
PGR031G3120 Punica granatum HOM05D004892 ORTHO05D005818 3.6e-32 141.7 107 61.7
QL02p028086 Quercus lobata HOM05D004892 ORTHO05D005818 3.6e-32 141.7 107 63.6
Gohir.A09G188500 Gossypium hirsutum HOM05D004892 ORTHO05D005818 4.7e-32 141.4 107 61.7
PGSC0003DMG400012239 Solanum tuberosum HOM05D004892 ORTHO05D005818 4.7e-32 141.4 107 62.6
Ah.12g053210 Amaranthus hybridus HOM05D004892 ORTHO05D005818 6.1e-32 141.0 107 62.6
Dinv12930 Davidia involucrata HOM05D004892 ORTHO05D005818 6.1e-32 141.0 107 63.6
PSO566G0075 Papaver somniferum HOM05D004892 ORTHO05D005818 6.1e-32 141.0 107 61.7
PSO782G2573 Papaver somniferum HOM05D004892 ORTHO05D005818 6.1e-32 141.0 107 61.7
RcHm_v2.0_Chr7g0186971 Rosa chinensis HOM05D004892 ORTHO05D005818 6.1e-32 141.0 107 63.6
PGSC0003DMG400005863 Solanum tuberosum HOM05D004892 ORTHO05D005818 6.1e-32 141.0 103 64.1
Aa31LG2G1700 Aethionema arabicum HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 62.6
CARHR046230 Cardamine hirsuta HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 61.7
Cpa.g.sc948.1 Carica papaya HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 61.7
MD14G1126800 Malus domestica HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 61.7
Oeu041373.1 Olea europaea HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 60.7
Sed0003804 Sechium edule HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 62.6
TAR375G0147 Trochodendron aralioides HOM05D004892 ORTHO05D005818 8.0e-32 140.6 107 62.6
CiPaw.12G077300 Carya illinoinensis HOM05D004892 ORTHO05D005818 1.0e-31 140.2 107 59.8
Aqoxy7G03851 Aquilegia oxysepala HOM05D004892 ORTHO05D005818 1.4e-31 139.8 107 62.6
Eucgr.D01681 Eucalyptus grandis HOM05D004892 ORTHO05D005818 1.4e-31 139.8 107 60.7
Manes.01G056204 Manihot esculenta HOM05D004892 ORTHO05D005818 1.4e-31 139.8 107 64.5
Sopen08g031330 Solanum pennellii HOM05D004892 ORTHO05D005818 1.4e-31 139.8 107 62.6
BcaC04g22597 Brassica carinata HOM05D004892 ORTHO05D005818 1.8e-31 139.4 107 60.7
A09p14480 Brassica napus HOM05D004892 ORTHO05D005818 1.8e-31 139.4 107 60.7
C09p17470 Brassica napus HOM05D004892 ORTHO05D005818 1.8e-31 139.4 107 60.7
BolC9t54645H Brassica oleracea HOM05D004892 ORTHO05D005818 1.8e-31 139.4 107 60.7
AL1G56680 Arabidopsis lyrata HOM05D004892 ORTHO05D005818 2.3e-31 139.0 107 60.7
CAN.G567.88 Capsicum annuum HOM05D004892 ORTHO05D005818 2.3e-31 139.0 107 62.6
Duzib084G0863 Durio zibethinus HOM05D004892 ORTHO05D005818 3.0e-31 138.7 114 58.8
Migut.E00629 Erythranthe guttata HOM05D004892 ORTHO05D005818 3.0e-31 138.7 107 59.8
FAN04G1760 Fragaria x ananassa HOM05D004892 ORTHO05D005818 3.0e-31 138.7 107 61.7
Solyc08g008580.3 Solanum lycopersicum HOM05D004892 ORTHO05D005818 3.0e-31 138.7 107 62.6
Solyc08g083110.4 Solanum lycopersicum HOM05D004892 ORTHO05D005818 3.0e-31 138.7 107 61.7
Sopen08g004400 Solanum pennellii HOM05D004892 ORTHO05D005818 3.0e-31 138.7 107 62.6
AT1G64660 Arabidopsis thaliana HOM05D004892 ORTHO05D005818 3.9e-31 138.3 107 59.8
FvH4_5g10890 Fragaria vesca HOM05D004892 ORTHO05D005818 3.9e-31 138.3 107 61.7
FAN18G2505 Fragaria x ananassa HOM05D004892 ORTHO05D005818 3.9e-31 138.3 107 61.7
Gohir.A09G188550 Gossypium hirsutum HOM05D004892 ORTHO05D005818 3.9e-31 138.3 107 60.7
Sp2g00050 Schrenkiella parvula HOM05D004892 ORTHO05D005818 3.9e-31 138.3 107 61.7
PSO782G5046 Papaver somniferum HOM05D004892 ORTHO05D005818 5.2e-31 137.9 107 60.7
THA.LOC104817406 Tarenaya hassleriana HOM05D004892 ORTHO05D005818 5.2e-31 137.9 107 62.6
CANSAT21G1008 Cannabis sativa HOM05D004892 ORTHO05D005818 6.7e-31 137.5 107 61.7
ECA246G1551 Erigeron canadensis HOM05D004892 ORTHO05D005818 6.7e-31 137.5 107 60.7
BcaB07g31489 Brassica carinata HOM05D004892 ORTHO05D005818 8.8e-31 137.1 107 59.8
BraA09t37096Z Brassica rapa HOM05D004892 ORTHO05D005818 8.8e-31 137.1 107 59.8
CiPaw.11G112200 Carya illinoinensis HOM05D004892 ORTHO05D005818 8.8e-31 137.1 107 60.7
FAN08G1665 Fragaria x ananassa HOM05D004892 ORTHO05D005818 8.8e-31 137.1 107 60.7
Potri.001G084000 Populus trichocarpa HOM05D004892 ORTHO05D005818 8.8e-31 137.1 107 58.9
arahy.Tifrunner.gnm1.ann1.V9A8GQ Arachis hypogaea HOM05D004892 ORTHO05D005818 1.1e-30 136.7 107 58.9
CSS0044312 Camellia sinensis var. sinensis HOM05D004892 ORTHO05D005818 1.1e-30 136.7 107 60.7
HanXRQChr17g0534241 Helianthus annuus HOM05D004892 ORTHO05D005818 1.1e-30 136.7 107 60.7
Manes.02G002900 Manihot esculenta HOM05D004892 ORTHO05D005818 1.1e-30 136.7 108 62.0
Os10g0517500 Oryza sativa ssp. japonica HOM05D004892 ORTHO05D005818 1.5e-30 136.3 107 59.8
Phvul.006G012501 Phaseolus vulgaris HOM05D004892 ORTHO05D005818 1.5e-30 136.3 107 61.7
SEGI_17386 Sequoiadendron giganteum HOM05D004892 ORTHO05D005818 1.5e-30 136.3 107 60.7
arahy.Tifrunner.gnm1.ann1.1FPN7V Arachis hypogaea HOM05D004892 ORTHO05D005818 2.0e-30 136.0 107 61.7
Duzib084G0098 Durio zibethinus HOM05D004892 ORTHO05D005818 2.0e-30 136.0 107 62.6
HPP92_003298 Vanilla planifolia HOM05D004892 ORTHO05D005818 2.6e-30 135.6 107 59.8
Zm00001eb220180 Zea mays HOM05D004892 ORTHO05D005818 2.6e-30 135.6 107 57.9
Phvul.L005001 Phaseolus vulgaris HOM05D004892 ORTHO05D005818 3.3e-30 135.2 107 60.7
Atru.chr9.1882 Acer truncatum HOM05D004892 ORTHO05D005818 4.4e-30 134.8 107 58.9
Hma1.2p1_0436F.1_g152760 Hydrangea macrophylla HOM05D004892 ORTHO05D005818 4.4e-30 134.8 107 58.9
Lj5g0005738 Lotus japonicus HOM05D004892 ORTHO05D005818 4.4e-30 134.8 107 57.9
PGR031G0198 Punica granatum HOM05D004892 ORTHO05D005818 4.4e-30 134.8 107 58.9
Rhsim02G0252200 Rhododendron simsii HOM05D004892 ORTHO05D005818 4.4e-30 134.8 107 58.9
Cc08_g16750 Coffea canephora HOM05D004892 ORTHO05D005818 5.7e-30 134.4 107 60.7
Lalb_Chr02g0149571 Lupinus albus HOM05D004892 ORTHO05D005818 5.7e-30 134.4 107 58.9
CSS0012078 Camellia sinensis var. sinensis HOM05D004892 ORTHO05D005818 7.4e-30 134.0 107 60.7
Carub.0002s0007 Capsella rubella HOM05D004892 ORTHO05D005818 7.4e-30 134.0 107 59.8
TWI15G0468 Tripterygium wilfordii HOM05D004892 ORTHO05D005818 7.4e-30 134.0 107 59.8
HanXRQChr06g0166781 Helianthus annuus HOM05D004892 ORTHO05D005818 9.7e-30 133.7 107 58.9
Medtr1g077890 Medicago truncatula HOM05D004892 ORTHO05D005818 9.7e-30 133.7 107 58.9
Glyma.02G087900 Glycine max HOM05D004892 ORTHO05D005818 1.3e-29 133.3 107 60.7
Glyma.13G001200 Glycine max HOM05D004892 ORTHO05D005818 1.3e-29 133.3 107 60.7
Lsat_1_v5_gn_3_14400 Lactuca sativa HOM05D004892 ORTHO05D005818 1.3e-29 133.3 107 58.9
Lalb_Chr14g0362651 Lupinus albus HOM05D004892 ORTHO05D005818 1.7e-29 132.9 107 57.0
Ciclev10020136m.g Citrus clementina HOM05D004892 ORTHO05D005818 2.2e-29 132.5 107 57.9
Lalb_Chr24g0402781 Lupinus albus HOM05D004892 ORTHO05D005818 2.2e-29 132.5 107 57.0
SGA_v2.0_scaffold104G30263 Striga asiatica HOM05D004892 ORTHO05D005818 2.2e-29 132.5 107 60.7
CAN.G792.25 Capsicum annuum HOM05D004892 ORTHO05D005818 2.8e-29 132.1 108 60.2
Glyma.10G172700 Glycine max HOM05D004892 ORTHO05D005818 3.7e-29 131.7 107 58.9
Hma1.2p1_3123F.1_g332876 Hydrangea macrophylla HOM05D004892 ORTHO05D005818 3.7e-29 131.7 107 57.9
TPR.G34814 Trifolium pratense HOM05D004892 ORTHO05D005818 4.8e-29 131.3 107 57.9
HPP92_014941 Vanilla planifolia HOM05D004892 ORTHO05D005818 8.2e-29 130.6 107 56.1
MELO3C005786.2 Cucumis melo HOM05D004892 ORTHO05D005818 1.4e-28 129.8 107 57.0
CsaV3_5G001660 Cucumis sativus L. HOM05D004892 ORTHO05D005818 1.4e-28 129.8 107 57.0
Medtr3g080850 Medicago truncatula HOM05D004892 ORTHO05D005818 1.4e-28 129.8 107 56.1
SMO364G0385 Selaginella moellendorffii HOM05D004892 ORTHO05D005818 1.4e-28 129.8 107 55.1
ClCG00G001140 Citrullus lanatus HOM05D004892 ORTHO05D005818 3.1e-28 128.6 107 56.1
ClCG01G001510 Citrullus lanatus HOM05D004892 ORTHO05D005818 3.1e-28 128.6 107 56.1
Psat5g110080 Pisum sativum HOM05D004892 ORTHO05D005818 4.1e-28 128.3 107 54.2
TPR.G21324 Trifolium pratense HOM05D004892 ORTHO05D005818 4.1e-28 128.3 107 55.1
Pp3c7_23100 Physcomitrium patens HOM05D004892 ORTHO05D005818 1.6e-27 126.3 107 55.1
Psat5g108800 Pisum sativum HOM05D004892 ORTHO05D005818 2.0e-27 125.9 107 52.3
Lsat_1_v5_gn_3_14340 Lactuca sativa HOM05D004892 ORTHO05D005818 3.5e-27 125.2 107 56.1
HPP92_014987 Vanilla planifolia HOM05D004892 ORTHO05D005818 3.5e-27 125.2 100 57.0
Psat6g052400 Pisum sativum HOM05D004892 ORTHO05D005818 7.7e-27 124.0 107 56.1
SGA_v2.0_scaffold57G20248 Striga asiatica HOM05D004892 ORTHO05D005818 3.8e-26 121.7 107 52.3
Ca_16297_v3 Cicer arietinum L. HOM05D004892 ORTHO05D005818 8.5e-26 120.6 100 58.0
Lsat_1_v5_gn_3_14320 Lactuca sativa HOM05D004892 ORTHO05D005818 1.5e-25 119.8 107 54.2
Sabra03G0137000 Salix brachista HOM05D004892 ORTHO05D005818 1.2e-24 116.7 100 53.0
DCAR_006545 Daucus carota HOM05D004892 ORTHO05D005818 8.0e-24 114.0 83 63.9
Pp3c13_23730 Physcomitrium patens HOM05D004892 ORTHO05D005818 1.0e-23 113.6 110 45.5
Nitab4.5_0007001g0050 Nicotiana tabacum HOM05D004892 ORTHO05D005818 3.0e-23 112.1 85 62.4
Potri.003G187032 Populus trichocarpa HOM05D004892 ORTHO05D005818 1.2e-22 110.2 100 50.0
Ca_09950_v3 Cicer arietinum L. HOM05D004892 ORTHO05D005818 8.3e-21 104.0 83 60.2
Cre10.g426152 Chlamydomonas reinhardtii HOM05D004892 ORTHO05D005818 6.5e-18 94.4 103 45.6
Gorai.006G205700 Gossypium raimondii HOM05D004892 ORTHO05D005818 1.5e-17 93.2 71 57.7
Oeu031496.1 Olea europaea HOM05D004892 ORTHO05D005818 2.5e-17 92.4 68 60.3
Cfa011922 Carpinus fangiana HOM05D004892 ORTHO05D005818 7.2e-17 90.9 68 67.6
Haze_09175 Corylus avellana HOM05D001824 ORTHO05D007807 9.4e-17 90.5 68 66.2
MD06G1118700 Malus domestica HOM05D004892 ORTHO05D005818 6.1e-16 87.8 107 43.9
AagrBONN_evm.TU.Sc2ySwM_228.5009 Anthoceros agrestis HOM05D004892 ORTHO05D005818 2.6e-14 82.4 107 35.5
Hund20460 Selenicereus undatus HOM05D004892 ORTHO05D005818 5.7e-14 81.3 105 40.0
Hma1.2p1_0303F.1_g118880 Hydrangea macrophylla HOM05D004892 ORTHO05D005818 5.9e-11 71.2 115 39.1
Pp3c3_14200 Physcomitrium patens HOM05D004892 ORTHO05D005818 7.2e-09 64.3 71 40.8


User provided reference genes

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