Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0933G001 Amborella trichopoda HOM05D006582 ORTHO05D008313 1.4e-170 602.8 306 100.0
TAR374G0762 Trochodendron aralioides HOM05D006582 ORTHO05D008313 1.2e-100 370.5 312 62.5
MD07G1135900 Malus domestica HOM05D006582 ORTHO05D008313 7.8e-100 367.9 314 61.8
GSVIVG01038593001 Vitis vinifera HOM05D006582 ORTHO05D008313 1.5e-98 363.6 313 61.7
Dinv29249 Davidia involucrata HOM05D006582 ORTHO05D008313 2.5e-98 362.8 309 61.8
Cfa016201 Carpinus fangiana HOM05D006582 ORTHO05D008313 3.3e-98 362.5 317 61.5
RcHm_v2.0_Chr1g0355871 Rosa chinensis HOM05D006582 ORTHO05D008313 4.3e-98 362.1 314 60.2
CsaV3_5G000310 Cucumis sativus L. HOM05D006582 ORTHO05D008313 2.1e-97 359.8 319 61.1
CANSAT21G1996 Cannabis sativa HOM05D006582 ORTHO05D008313 4.7e-97 358.6 316 61.1
Hma1.2p1_0415F.1_g148010 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 4.7e-97 358.6 309 61.2
Aqoxy7G00041 Aquilegia oxysepala HOM05D006582 ORTHO05D008313 6.2e-97 358.2 310 61.6
Prupe.2G171600 Prunus persica HOM05D006582 ORTHO05D008313 6.2e-97 358.2 315 59.7
Sed0002968 Sechium edule HOM05D006582 ORTHO05D008313 1.1e-96 357.5 320 60.6
MELO3C005901.2 Cucumis melo HOM05D006582 ORTHO05D008313 1.4e-96 357.1 319 60.8
Rhsim03G0211600 Rhododendron simsii HOM05D006582 ORTHO05D008313 1.4e-96 357.1 309 61.8
CiPaw.06G044200 Carya illinoinensis HOM05D006582 ORTHO05D008313 1.8e-96 356.7 316 60.4
PGR142G1628 Punica granatum HOM05D006582 ORTHO05D008313 1.8e-96 356.7 317 60.3
Haze_00249 Corylus avellana HOM05D006582 ORTHO05D008313 4.0e-96 355.5 345 57.4
Haze_00255 Corylus avellana HOM05D006582 ORTHO05D008313 4.0e-96 355.5 345 57.4
SGA_v2.0_scaffold18G08434 Striga asiatica HOM05D006582 ORTHO05D008313 5.2e-96 355.1 309 61.8
Actinidia34241 Actinidia chinensis HOM05D006582 ORTHO05D008313 1.5e-95 353.6 309 61.2
FAN03G0584 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.0e-95 353.2 314 59.2
FAN06G3963 Fragaria x ananassa HOM05D006582 ORTHO05D008313 2.0e-95 353.2 314 58.9
CSS0043436 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 3.4e-95 352.4 309 61.5
FvH4_7g14460 Fragaria vesca HOM05D006582 ORTHO05D008313 3.4e-95 352.4 314 58.9
FAN06G2233 Fragaria x ananassa HOM05D006582 ORTHO05D008313 3.4e-95 352.4 314 58.9
FAN01G0099 Fragaria x ananassa HOM05D006582 ORTHO05D008313 4.4e-95 352.1 314 58.9
CSS0003388 Camellia sinensis var. sinensis HOM05D006582 ORTHO05D008313 9.9e-95 350.9 309 61.2
Ciclev10021376m.g Citrus clementina HOM05D006582 ORTHO05D008313 9.9e-95 350.9 314 58.9
Lj3A900T44 Lonicera japonica HOM05D006582 ORTHO05D008313 1.1e-93 347.4 311 59.8
Duzib068G0295 Durio zibethinus HOM05D006582 ORTHO05D008313 1.4e-93 347.1 326 58.3
Nn6g34389 Nelumbo nucifera HOM05D006582 ORTHO05D008313 1.4e-93 347.1 313 59.7
THA.LOC104811904 Tarenaya hassleriana HOM05D006582 ORTHO05D008313 1.4e-93 347.1 318 58.2
QL09p007748 Quercus lobata HOM05D006582 ORTHO05D008313 7.1e-93 344.7 322 58.4
TWI60G0746 Tripterygium wilfordii HOM05D006582 ORTHO05D008313 7.1e-93 344.7 328 57.6
Lsat_1_v5_gn_2_135281 Lactuca sativa HOM05D006582 ORTHO05D008313 9.2e-93 344.4 314 59.6
Migut.F00182 Erythranthe guttata HOM05D006582 ORTHO05D008313 2.7e-92 342.8 310 59.7
PSO782G4269 Papaver somniferum HOM05D006582 ORTHO05D008313 2.7e-92 342.8 310 58.7
Thecc.03G203200 Theobroma cacao HOM05D006582 ORTHO05D008313 2.7e-92 342.8 326 56.1
arahy.Tifrunner.gnm1.ann1.AV4C6H Arachis hypogaea HOM05D006582 ORTHO05D008313 1.0e-91 340.9 317 59.6
arahy.Tifrunner.gnm1.ann1.D33ADG Arachis hypogaea HOM05D006582 ORTHO05D008313 1.0e-91 340.9 317 59.6
SalBow4G1606 Salvia bowleyana HOM05D006582 ORTHO05D008313 1.0e-91 340.9 308 59.4
unitig_747.g21740 Utricularia gibba HOM05D006582 ORTHO05D008313 1.7e-91 340.1 306 57.5
AT4G27750 Arabidopsis thaliana HOM05D006582 ORTHO05D008313 1.9e-90 336.7 320 55.6
Aa31LG3G9690 Aethionema arabicum HOM05D006582 ORTHO05D008313 3.3e-90 335.9 320 55.6
BcaNung01623 Brassica carinata HOM05D006582 ORTHO05D008313 3.3e-90 335.9 322 56.5
BcaC09g50542 Brassica carinata HOM05D006582 ORTHO05D008313 4.3e-90 335.5 320 56.2
A01p19210 Brassica napus HOM05D006582 ORTHO05D008313 5.6e-90 335.1 320 56.2
Thhalv10025816m.g Eutrema salsugineum HOM05D006582 ORTHO05D008313 5.6e-90 335.1 320 55.3
BraA01t01863Z Brassica rapa HOM05D006582 ORTHO05D008313 9.6e-90 334.3 320 56.2
C01p24110 Brassica napus HOM05D006582 ORTHO05D008313 1.6e-89 333.6 320 56.2
CARHR235480 Cardamine hirsuta HOM05D006582 ORTHO05D008313 1.6e-89 333.6 320 55.0
Sp7g25720 Schrenkiella parvula HOM05D006582 ORTHO05D008313 2.8e-89 332.8 320 55.6
Cc04_g16300 Coffea canephora HOM05D006582 ORTHO05D008313 3.6e-89 332.4 309 58.6
vmacro06405 Vaccinium macrocarpon HOM05D006582 ORTHO05D008313 3.6e-89 332.4 355 53.2
Carub.0007s1306 Capsella rubella HOM05D006582 ORTHO05D008313 4.7e-89 332.0 320 55.0
HanXRQChr07g0206401 Helianthus annuus HOM05D006582 ORTHO05D008313 4.7e-89 332.0 305 58.0
MBI04_g35986_MAGBIO Magnolia biondii HOM05D006582 ORTHO05D008313 4.7e-89 332.0 311 59.5
Peaxi162Scf00740g00331 Petunia axillaris HOM05D006582 ORTHO05D008313 6.2e-89 331.6 309 57.0
Solyc03g082820.3 Solanum lycopersicum HOM05D006582 ORTHO05D008313 6.2e-89 331.6 309 57.6
PGSC0003DMG402018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 8.1e-89 331.3 309 57.6
Gohir.D08G113800 Gossypium hirsutum HOM05D006582 ORTHO05D008313 1.1e-88 330.9 326 54.6
Sopen03g022560 Solanum pennellii HOM05D006582 ORTHO05D008313 1.1e-88 330.9 309 57.3
AL7G24900 Arabidopsis lyrata HOM05D006582 ORTHO05D008313 1.4e-88 330.5 321 54.5
Gorai.004G122700 Gossypium raimondii HOM05D006582 ORTHO05D008313 1.8e-88 330.1 284 60.2
COL.COLO4_16812 Corchorus olitorius HOM05D006582 ORTHO05D008313 2.4e-88 329.7 293 58.7
Psat7g170040 Pisum sativum HOM05D006582 ORTHO05D008313 2.4e-88 329.7 319 56.1
CAN.G481.47 Capsicum annuum HOM05D006582 ORTHO05D008313 4.0e-88 328.9 311 56.3
VMungo1127G0470 Vigna mungo HOM05D006582 ORTHO05D008313 5.3e-88 328.6 314 57.6
Phvul.011G018800 Phaseolus vulgaris HOM05D006582 ORTHO05D008313 6.9e-88 328.2 315 56.8
Ah.07g205040 Amaranthus hybridus HOM05D006582 ORTHO05D008313 1.2e-87 327.4 291 57.7
Sabra15G0024300 Salix brachista HOM05D006582 ORTHO05D008313 1.2e-87 327.4 323 55.1
Lj3g0025694 Lotus japonicus HOM05D006582 ORTHO05D008313 1.5e-87 327.0 312 57.4
Manes.01G148600 Manihot esculenta HOM05D006582 ORTHO05D008313 1.5e-87 327.0 315 56.8
Medtr4g078140 Medicago truncatula HOM05D006582 ORTHO05D008313 2.6e-87 326.2 321 56.1
Sc19g0000750 Simmondsia chinensis HOM05D006582 ORTHO05D008313 5.8e-87 325.1 283 58.7
Glyma.11G108800 Glycine max HOM05D006582 ORTHO05D008313 7.6e-87 324.7 325 57.5
AUR62006048 Chenopodium quinoa HOM05D006582 ORTHO05D008313 1.3e-86 323.9 283 59.4
Ca_18952_v3 Cicer arietinum L. HOM05D006582 ORTHO05D008313 1.3e-86 323.9 319 55.2
AUR62035580 Chenopodium quinoa HOM05D006582 ORTHO05D008313 2.2e-86 323.2 294 57.8
Hund11634 Selenicereus undatus HOM05D006582 ORTHO05D008313 4.9e-86 322.0 283 58.7
BolC1t02368H Brassica oleracea HOM05D006582 ORTHO05D008313 8.4e-86 321.2 349 51.9
TPR.G19615 Trifolium pratense HOM05D006582 ORTHO05D008313 8.4e-86 321.2 319 54.2
SGA_v2.0_scaffold44G16825 Striga asiatica HOM05D006582 ORTHO05D008313 1.9e-85 320.1 306 54.9
Glyma.12G016600 Glycine max HOM05D006582 ORTHO05D008313 9.3e-85 317.8 316 56.0
MD01G1064000 Malus domestica HOM05D006582 ORTHO05D008313 1.2e-84 317.4 333 54.1
EL10Ac3g05224 Beta vulgaris HOM05D006582 ORTHO05D008313 2.1e-84 316.6 291 56.4
DCAR_008960 Daucus carota HOM05D006582 ORTHO05D008313 6.0e-84 315.1 291 58.1
Lalb_Chr03g0024361 Lupinus albus HOM05D006582 ORTHO05D008313 1.9e-82 310.1 317 53.0
ECA238G3804 Erigeron canadensis HOM05D006582 ORTHO05D008313 1.3e-81 307.4 338 51.5
Os06g0129300 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 8.1e-81 304.7 286 57.0
BcaNung01628 Brassica carinata HOM05D006582 ORTHO05D008313 5.3e-80 302.0 321 52.0
Hund21029 Selenicereus undatus HOM05D006582 ORTHO05D008313 1.5e-79 300.4 301 53.2
Zm00001eb378450 Zea mays HOM05D006582 ORTHO05D008313 2.2e-78 296.6 286 55.6
HPP92_007389 Vanilla planifolia HOM05D006582 ORTHO05D008313 3.0e-75 286.2 293 53.9
BcaNung01632 Brassica carinata HOM05D006582 ORTHO05D008313 1.9e-74 283.5 335 49.0
Nitab4.5_0002780g0150 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.4e-72 276.6 329 49.8
Nitab4.5_0007755g0010 Nicotiana tabacum HOM05D006582 ORTHO05D008313 2.5e-69 266.5 350 46.3
Hma1.2p1_0415F.1_g148020 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 2.1e-68 263.5 220 61.8
Eucgr.K00407 Eucalyptus grandis HOM05D006582 ORTHO05D008313 8.7e-67 258.1 233 59.2
CDE04G1908 Ceratophyllum demersum HOM05D006582 ORTHO05D008313 9.0e-64 248.1 306 47.4
MD01G1064500 Malus domestica HOM05D006582 ORTHO05D008313 7.6e-63 245.0 193 63.7
Os10g0520900 Oryza sativa ssp. japonica HOM05D006582 ORTHO05D008313 8.4e-62 241.5 276 46.4
Gohir.A08G102500 Gossypium hirsutum HOM05D006582 ORTHO05D008313 4.2e-61 239.2 237 53.6
MD01G1063600 Malus domestica HOM05D006582 ORTHO05D008313 8.7e-59 231.5 268 48.9
Mapoly0081s0017 Marchantia polymorpha HOM05D006582 ORTHO05D008313 8.2e-57 224.9 313 43.8
Zm00001eb021230 Zea mays HOM05D006582 ORTHO05D008313 7.7e-55 218.4 290 42.1
Potri.015G029300 Populus trichocarpa HOM05D006582 ORTHO05D008313 5.5e-53 212.2 209 55.5
SMO356G0114 Selaginella moellendorffii HOM05D001613 ORTHO05D001556 1.4e-51 207.6 310 37.7
Pp3c14_24810 Physcomitrium patens HOM05D006582 ORTHO05D008313 1.7e-49 200.7 281 40.9
AagrBONN_evm.TU.Sc2ySwM_228.4673 Anthoceros agrestis HOM05D006582 ORTHO05D008313 4.7e-44 182.6 235 42.6
Cpa.g.sc3.116 Carica papaya HOM05D006582 ORTHO05D008313 3.3e-42 176.4 194 51.5
PGSC0003DMG401018519 Solanum tuberosum HOM05D006582 ORTHO05D008313 1.6e-36 157.5 154 57.8
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.7e-30 137.5 252 36.5
CiPaw.05G199600 Carya illinoinensis HOM05D006582 ORTHO05D008313 7.5e-26 122.1 115 54.8
Hma1.2p1_0512F.1_g169380 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 1.7e-25 120.9 196 40.3
Hma1.2p1_0415F.1_g148000 Hydrangea macrophylla HOM05D006582 ORTHO05D008313 8.3e-17 92.0 102 52.9
SEGI_26283 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 1.4e-16 91.3 84 58.3
SHI19111 Sapria himalayana HOM05D006582 ORTHO05D008313 1.7e-14 84.3 104 46.2
SHI19113 Sapria himalayana HOM05D006582 ORTHO05D008313 3.8e-14 83.2 88 53.4
Rhsim03G0115100 Rhododendron simsii HOM05D006582 ORTHO05D023108 1.7e-09 67.8 135 35.6
SEGI_35321 Sequoiadendron giganteum HOM05D006582 ORTHO05D008313 5.9e-07 59.3 83 37.3
MD07G1135700 Malus domestica HOM05D006582 ORTHO05D008313 1.3e-06 58.2 79 45.6


User provided reference genes

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