Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0929G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.1e-244 848.6 421 100.0
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 2.2e-100 370.2 510 49.8
TAR626G1549 Trochodendron aralioides HOM05D002352 ORTHO05D003724 8.8e-86 321.6 528 44.3
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.4e-83 313.5 532 43.8
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 4.1e-83 312.8 525 43.4
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 7.0e-83 312.0 531 43.9
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 7.0e-83 312.0 531 43.9
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 7.0e-83 312.0 525 43.2
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.7e-81 307.4 542 42.4
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 5.0e-81 305.8 526 43.9
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 1.5e-80 304.3 517 43.9
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 3.3e-80 303.1 277 63.5
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 5.5e-80 302.4 513 43.5
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 5.5e-80 302.4 520 44.2
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 5.5e-80 302.4 512 43.8
Oeu004743.1 Olea europaea HOM05D002352 ORTHO05D003724 5.5e-80 302.4 526 43.5
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 7.2e-80 302.0 280 62.9
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 9.5e-80 301.6 517 43.5
GSVIVG01002244001 Vitis vinifera HOM05D002352 ORTHO05D003724 9.5e-80 301.6 277 63.9
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.8e-79 300.1 521 44.0
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 4.7e-79 299.3 515 43.9
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 4.7e-79 299.3 506 44.9
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 4.7e-79 299.3 517 43.7
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 4.7e-79 299.3 513 42.5
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 2.3e-78 297.0 516 43.0
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 3.0e-78 296.6 513 43.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 4.0e-78 296.2 277 62.8
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 5.2e-78 295.8 509 42.6
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 6.8e-78 295.4 522 41.6
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 8.9e-78 295.0 517 42.6
Actinidia39446 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.2e-77 294.7 277 62.5
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 1.2e-77 294.7 496 43.8
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 2.0e-77 293.9 513 42.3
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 4.4e-77 292.7 529 42.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.4e-77 292.7 513 43.3
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.4e-77 292.7 513 43.3
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 4.4e-77 292.7 514 42.6
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 5.7e-77 292.4 273 63.0
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 5.7e-77 292.4 525 42.1
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 7.5e-77 292.0 523 43.0
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 7.5e-77 292.0 527 42.3
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 7.5e-77 292.0 501 42.7
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 2.8e-76 290.0 277 62.1
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.8e-76 290.0 522 42.9
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 2.8e-76 290.0 490 43.3
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 2.8e-76 290.0 277 62.5
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 3.7e-76 289.7 530 42.3
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 4.9e-76 289.3 524 42.7
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 6.3e-76 288.9 520 43.1
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 6.3e-76 288.9 277 61.7
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 6.3e-76 288.9 526 43.9
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 1.1e-75 288.1 547 41.3
MSTRG.15909 Avicennia marina HOM05D002352 ORTHO05D003724 1.8e-75 287.3 498 41.4
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 1.8e-75 287.3 527 41.9
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 1.8e-75 287.3 488 42.8
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 2.4e-75 287.0 277 60.6
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 3.1e-75 286.6 277 62.1
Cc02_g12870 Coffea canephora HOM05D002352 ORTHO05D003724 4.1e-75 286.2 480 44.2
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 4.1e-75 286.2 526 42.4
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 4.1e-75 286.2 277 61.4
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 5.4e-75 285.8 272 62.9
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 5.4e-75 285.8 538 41.8
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 5.4e-75 285.8 524 41.4
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 7.0e-75 285.4 285 61.4
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 7.0e-75 285.4 277 62.1
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 7.0e-75 285.4 519 42.8
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 7.0e-75 285.4 527 41.9
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 9.2e-75 285.0 502 43.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.2e-75 285.0 277 61.7
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 9.2e-75 285.0 277 61.7
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.6e-74 284.3 277 61.0
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 2.0e-74 283.9 502 42.2
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.0e-74 283.9 529 42.0
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 2.7e-74 283.5 516 43.0
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 2.7e-74 283.5 277 61.4
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 3.5e-74 283.1 277 61.0
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 1.0e-73 281.6 489 42.5
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.7e-73 280.8 522 41.0
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-73 280.4 486 43.6
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 2.9e-73 280.0 272 61.4
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 2.9e-73 280.0 531 41.6
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 5.0e-73 279.3 497 43.1
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 5.0e-73 279.3 489 42.5
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 6.6e-73 278.9 490 42.2
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 8.6e-73 278.5 497 43.1
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 1.1e-72 278.1 494 42.9
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.1e-72 278.1 465 43.4
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 1.1e-72 278.1 521 41.3
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 1.5e-72 277.7 494 43.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.5e-72 277.7 542 41.0
SGA_v2.0_scaffold100G29641 Striga asiatica HOM05D002352 ORTHO05D003724 1.9e-72 277.3 272 59.9
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 2.5e-72 276.9 493 42.4
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.5e-72 276.9 498 42.6
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.5e-72 276.9 489 43.1
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 2.5e-72 276.9 492 42.3
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 4.3e-72 276.2 549 39.2
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 4.3e-72 276.2 273 60.1
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 7.3e-72 275.4 277 59.9
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 9.5e-72 275.0 272 59.2
unitig_46.g18629 Utricularia gibba HOM05D002352 ORTHO05D003724 9.5e-72 275.0 277 58.1
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 1.2e-71 274.6 524 41.8
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 1.6e-71 274.2 272 60.7
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 3.6e-71 273.1 272 60.7
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 6.1e-71 272.3 277 59.6
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 1.0e-70 271.6 277 59.6
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.4e-70 271.2 516 40.9
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 1.4e-70 271.2 488 41.8
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 1.4e-70 271.2 277 59.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 3.0e-70 270.0 278 57.9
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 4.0e-70 269.6 488 40.8
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 4.0e-70 269.6 488 40.8
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 8.9e-70 268.5 277 58.5
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 8.9e-70 268.5 577 38.0
Cpa.g.sc192.9 Carica papaya HOM05D002352 ORTHO05D003724 1.2e-69 268.1 460 43.5
Lj1C1209G5 Lonicera japonica HOM05D002352 ORTHO05D003724 3.4e-69 266.5 241 63.5
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 4.4e-69 266.2 492 41.3
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 7.5e-69 265.4 513 40.4
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 7.5e-69 265.4 277 56.0
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.2e-68 263.8 278 56.8
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 1.4e-67 261.2 312 53.8
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 2.7e-66 256.9 525 39.0
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 2.3e-65 253.8 281 56.9
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 2.8e-63 246.9 278 55.8
Lsat_1_v5_gn_6_24900 Lactuca sativa HOM05D002352 ORTHO05D003724 2.3e-62 243.8 240 58.8
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 1.3e-60 238.0 498 39.4
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 6.4e-60 235.7 471 39.7
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.1e-54 218.4 238 55.5
Hma1.2p1_0664F.1_g198970 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 3.4e-53 213.4 251 55.4
Mapoly0009s0135 Marchantia polymorpha HOM05D002352 ORTHO05D003724 4.4e-53 213.0 280 50.4
Pp3c9_24390 Physcomitrium patens HOM05D002352 ORTHO05D003724 2.9e-52 210.3 277 49.8
MBI13_g10046_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 2.4e-51 207.2 190 62.6
Pp3c15_23870 Physcomitrium patens HOM05D002352 ORTHO05D003724 4.6e-50 203.0 277 48.7
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 1.6e-47 194.5 284 49.3
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 1.3e-44 184.9 442 37.6
CBR_g39205 Chara braunii HOM05D002352 ORTHO05D003724 2.9e-44 183.7 292 44.2
Lsat_1_v5_gn_2_57060 Lactuca sativa HOM05D002352 ORTHO05D003724 1.4e-43 181.4 188 58.5
SHI23485 Sapria himalayana HOM05D002352 ORTHO05D003724 2.7e-42 177.2 377 35.8
ATR0582G149 Amborella trichopoda HOM05D002352 ORTHO05D003724 6.6e-41 172.6 233 49.4
RhsimUnG0043500 Rhododendron simsii HOM05D002352 ORTHO05D003724 9.6e-40 168.7 222 48.6
Zm00001eb390200 Zea mays HOM05D002352 ORTHO05D003724 1.2e-34 151.8 274 39.8
ECA248G2607 Erigeron canadensis HOM05D002352 ORTHO05D000452 1.0e-33 148.7 211 46.4
Lsat_1_v5_gn_8_88460 Lactuca sativa HOM05D002352 ORTHO05D003724 3.4e-29 133.7 97 72.2
ATR1081G001 Amborella trichopoda HOM05D002352 ORTHO05D003724 9.9e-29 132.1 85 80.0
ATR1098G084 Amborella trichopoda HOM05D002352 ORTHO05D003724 8.4e-28 129.0 85 78.8
Lsat_1_v5_gn_5_24520 Lactuca sativa HOM05D002352 ORTHO05D003724 1.2e-26 125.2 85 75.3
Oeu043710.2 Olea europaea HOM05D002352 ORTHO05D003724 6.7e-25 119.4 85 71.8
ECA248G2919 Erigeron canadensis HOM05D002352 ORTHO05D003724 7.4e-24 115.9 163 46.0
TPR.G21592 Trifolium pratense HOM05D002352 ORTHO05D003724 9.6e-24 115.5 161 46.0
ATR0589G051 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.5e-21 108.2 71 81.7
Eucgr.D00654 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.4e-19 101.7 245 34.7
Lsat_1_v5_gn_8_115100 Lactuca sativa HOM05D002352 ORTHO05D003724 1.4e-19 101.7 71 71.8
Hma1.2p1_0617F.1_g190130 Hydrangea macrophylla HOM05D002352 ORTHO05D003724 7.1e-19 99.4 70 74.3
MCO15G118 Micromonas commoda HOM05D002352 ORTHO05D003724 1.9e-16 91.3 236 35.6
ATR0589G098 Amborella trichopoda HOM05D002352 ORTHO05D003724 1.1e-14 85.5 64 75.0
PRCOL_00006063 Prasinoderma coloniale HOM05D002352 ORTHO05D003724 3.1e-14 84.0 171 36.8
Cre03.g149800 Chlamydomonas reinhardtii HOM05D002352 ORTHO05D003724 9.0e-14 82.4 200 32.5
EL10Ac4g08203 Beta vulgaris HOM05D002352 ORTHO05D003724 3.8e-12 77.0 68 61.8
Rhsim09G0084000 Rhododendron simsii HOM05D004598 ORTHO05D005550 7.1e-11 72.8 85 60.0
SHI23484 Sapria himalayana HOM05D002352 ORTHO05D013021 7.1e-11 72.8 95 50.5
Actinidia05606 Actinidia chinensis HOM05D002352 ORTHO05D003724 1.9e-08 64.7 48 66.7
Pp3c7_1820 Physcomitrium patens HOM05D002352 ORTHO05D003724 6.3e-07 59.7 46 67.4
TPR.G36198 Trifolium pratense HOM05D002352 ORTHO05D003724 1.4e-06 58.5 43 69.8


User provided reference genes

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