Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0927G013 Amborella trichopoda HOM05D023756 ORTHO05D023429 3.1e-156 555.1 272 100.0
ATR0014G001 Amborella trichopoda HOM05D023756 ORTHO05D023429 1.1e-140 503.4 272 92.6
ATR0936G001 Amborella trichopoda HOM05D023756 ORTHO05D023429 9.0e-124 447.2 237 93.7
ATR1103G001 Amborella trichopoda HOM05D023756 ORTHO05D023429 1.4e-71 273.9 209 71.8
ATR1125G051 Amborella trichopoda HOM05D023756 ORTHO05D023429 2.8e-64 249.6 128 96.1
GSVIVG01008327001 Vitis vinifera HOM05D000260 ORTHO05D000318 1.2e-19 101.3 177 30.5
Glyma.09G182250 Glycine max HOM05D000260 ORTHO05D004405 1.6e-16 90.9 191 28.8
ClCG04G010960 Citrullus lanatus HOM05D000072 ORTHO05D000318 4.8e-16 89.4 214 29.0
Medtr6g083020 Medicago truncatula HOM05D000260 ORTHO05D000318 1.4e-15 87.8 213 26.3
Cfa023331 Carpinus fangiana HOM05D000260 ORTHO05D000318 3.1e-15 86.7 216 28.2
PGR119G1741 Punica granatum HOM05D000260 ORTHO05D000318 9.0e-15 85.1 188 33.0
Haze_00991 Corylus avellana HOM05D000026 ORTHO05D004405 1.2e-14 84.7 194 30.4
MD06G1218900 Malus domestica HOM05D000260 ORTHO05D000318 2.6e-14 83.6 175 28.0
COL.COLO4_07249 Corchorus olitorius HOM05D000260 ORTHO05D000318 1.3e-13 81.3 160 28.8
Dinv34807 Davidia involucrata HOM05D000072 ORTHO05D000026 1.3e-13 81.3 193 31.1
Lj5C152G14 Lonicera japonica HOM05D000260 ORTHO05D000318 1.7e-13 80.9 173 28.9
Manes.05G132300 Manihot esculenta HOM05D000260 ORTHO05D000318 3.8e-13 79.7 163 30.1
Nitab4.5_0008832g0030 Nicotiana tabacum HOM05D000260 ORTHO05D000318 3.8e-13 79.7 195 28.7
Peaxi162Scf00634g00516 Petunia axillaris HOM05D000072 ORTHO05D000026 3.8e-13 79.7 164 30.5
Sabra15G0040300 Salix brachista HOM05D000260 ORTHO05D000318 3.8e-13 79.7 162 28.4
TAR433G0001 Trochodendron aralioides HOM05D000260 ORTHO05D004405 3.8e-13 79.7 138 34.8
Cfa023329 Carpinus fangiana HOM05D000260 ORTHO05D000318 6.4e-13 79.0 171 29.2
AUR62029904 Chenopodium quinoa HOM05D000260 ORTHO05D000318 8.4e-13 78.6 138 37.0
Nitab4.5_0006493g0010 Nicotiana tabacum HOM05D000260 ORTHO05D000318 1.1e-12 78.2 173 29.5
Peaxi162Scf00634g00518 Petunia axillaris HOM05D000260 ORTHO05D000318 1.1e-12 78.2 164 30.5
TAR627G0833 Trochodendron aralioides HOM05D000260 ORTHO05D004405 1.1e-12 78.2 185 31.4
FAN18G3675 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.4e-12 77.8 166 30.1
Sc14g0007350 Simmondsia chinensis HOM05D000260 ORTHO05D000318 1.4e-12 77.8 149 31.5
CSS0029034 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.9e-12 77.4 178 27.0
AUR62033802 Chenopodium quinoa HOM05D000260 ORTHO05D000318 1.9e-12 77.4 138 37.7
TAR629G1802 Trochodendron aralioides HOM05D000260 ORTHO05D004405 2.4e-12 77.0 193 29.5
CDE06G0084 Ceratophyllum demersum HOM05D000260 ORTHO05D004405 4.2e-12 76.3 193 28.5
AUR62029905 Chenopodium quinoa HOM05D000260 ORTHO05D000318 4.2e-12 76.3 127 28.3
Potri.015G045101 Populus trichocarpa HOM05D000260 ORTHO05D000318 4.2e-12 76.3 131 28.2
Lj5A152G71 Lonicera japonica HOM05D000260 ORTHO05D000318 5.5e-12 75.9 169 27.2
Hma1.2p1_0013F.1_g008560 Hydrangea macrophylla HOM05D000260 ORTHO05D004405 9.3e-12 75.1 155 31.6
CSS0016660 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.2e-11 74.7 188 27.1
MELO3C002105.2 Cucumis melo HOM05D000260 ORTHO05D000318 1.2e-11 74.7 174 25.3
Eucgr.B00768 Eucalyptus grandis HOM05D000260 ORTHO05D000318 1.2e-11 74.7 156 31.4
FAN18G1212 Fragaria x ananassa HOM05D000260 ORTHO05D000318 1.2e-11 74.7 166 29.5
Manes.05G132400 Manihot esculenta HOM05D000260 ORTHO05D004405 1.6e-11 74.3 129 32.6
Ciclev10018735m.g Citrus clementina HOM05D000260 ORTHO05D000318 2.1e-11 73.9 153 29.4
Potri.015G045200 Populus trichocarpa HOM05D000072 ORTHO05D000026 2.1e-11 73.9 130 29.2
CDE12G0253 Ceratophyllum demersum HOM05D000260 ORTHO05D000318 2.7e-11 73.6 135 33.3
Rhsim08G0083500 Rhododendron simsii HOM05D000260 ORTHO05D000318 2.7e-11 73.6 122 35.2
Migut.D01586 Erythranthe guttata HOM05D000260 ORTHO05D000318 6.0e-11 72.4 157 25.5
Eucgr.B00758 Eucalyptus grandis HOM05D000260 ORTHO05D000318 6.0e-11 72.4 180 30.6
Eucgr.B00759 Eucalyptus grandis HOM05D000260 ORTHO05D000318 6.0e-11 72.4 156 32.1
Lj4C190G2 Lonicera japonica HOM05D000260 ORTHO05D000318 7.9e-11 72.0 169 33.1
Cfa019743 Carpinus fangiana HOM05D000260 ORTHO05D004405 1.0e-10 71.6 166 28.3
CsaV3_1G006880 Cucumis sativus L. HOM05D000260 ORTHO05D000318 1.0e-10 71.6 165 25.5
Lj4C188T2 Lonicera japonica HOM05D000260 ORTHO05D000318 1.0e-10 71.6 175 32.0
CDE06G0395 Ceratophyllum demersum HOM05D000260 ORTHO05D004405 1.8e-10 70.9 211 26.5
Nn4g23926 Nelumbo nucifera HOM05D000072 ORTHO05D000026 1.8e-10 70.9 134 26.1
Nitab4.5_0000208g0400 Nicotiana tabacum HOM05D000260 ORTHO05D000318 1.8e-10 70.9 147 28.6
CSS0036340 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 2.3e-10 70.5 189 27.5
Manes.15G004500 Manihot esculenta HOM05D000260 ORTHO05D004405 2.3e-10 70.5 223 27.4
arahy.Tifrunner.gnm1.ann1.M1AXPP Arachis hypogaea HOM05D000072 ORTHO05D000026 3.0e-10 70.1 174 25.3
Nitab4.5_0001536g0020 Nicotiana tabacum HOM05D000260 ORTHO05D000318 3.0e-10 70.1 134 29.9
Eucgr.B00737 Eucalyptus grandis HOM05D000260 ORTHO05D004405 6.7e-10 68.9 159 29.6
Lsat_1_v5_gn_8_143940 Lactuca sativa HOM05D000260 ORTHO05D000318 6.7e-10 68.9 139 28.8
Solyc03g119230.1 Solanum lycopersicum HOM05D000260 ORTHO05D004405 6.7e-10 68.9 138 26.1
HanXRQChr17g0560391 Helianthus annuus HOM05D000260 ORTHO05D000318 8.7e-10 68.6 133 30.8
Lsat_1_v5_gn_8_142540 Lactuca sativa HOM05D000260 ORTHO05D004405 8.7e-10 68.6 188 26.6
PGSC0003DMG401005729 Solanum tuberosum HOM05D000260 ORTHO05D000318 8.7e-10 68.6 140 27.1
Sopen03g038120 Solanum pennellii HOM05D000260 ORTHO05D000318 1.1e-09 68.2 138 26.1
TWI60G0982 Tripterygium wilfordii HOM05D000260 ORTHO05D000318 1.1e-09 68.2 180 26.7
Dinv16123 Davidia involucrata HOM05D000260 ORTHO05D004405 1.5e-09 67.8 130 30.0
Lsat_1_v5_gn_8_143900 Lactuca sativa HOM05D000260 ORTHO05D004405 1.5e-09 67.8 135 26.7
CAN.G652.4 Capsicum annuum HOM05D000260 ORTHO05D000318 2.5e-09 67.0 165 27.3
Rhsim10G0069700 Rhododendron simsii HOM05D000260 ORTHO05D000318 2.5e-09 67.0 140 32.9
CSS0016105 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 3.3e-09 66.6 189 27.5
Cc04_g06940 Coffea canephora HOM05D000072 ORTHO05D000026 3.3e-09 66.6 126 31.7
QL02p049624 Quercus lobata HOM05D000260 ORTHO05D000318 3.3e-09 66.6 169 29.6
TPR.G24789 Trifolium pratense HOM05D000260 ORTHO05D004405 3.3e-09 66.6 138 29.7
QL02p050809 Quercus lobata HOM05D000072 ORTHO05D000026 4.3e-09 66.2 196 28.1
CSS0035594 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 7.4e-09 65.5 129 25.6
MD06G1136200 Malus domestica HOM05D000260 ORTHO05D000318 7.4e-09 65.5 154 28.6
Cc04_g06930 Coffea canephora HOM05D000260 ORTHO05D000318 9.6e-09 65.1 160 31.9
COL.COLO4_07247 Corchorus olitorius HOM05D000260 ORTHO05D004405 9.6e-09 65.1 144 29.2
Duzib138G0784 Durio zibethinus HOM05D000072 ORTHO05D000026 9.6e-09 65.1 115 33.9
Oeu036849.1 Olea europaea HOM05D000260 ORTHO05D000318 9.6e-09 65.1 158 31.0
Phvul.004G154700 Phaseolus vulgaris HOM05D000260 ORTHO05D004405 9.6e-09 65.1 122 31.1
ECA232G1450 Erigeron canadensis HOM05D002670 ORTHO05D000318 1.3e-08 64.7 138 29.7
MBI09_g25171_MAGBIO Magnolia biondii HOM05D000260 ORTHO05D000318 1.3e-08 64.7 112 30.4
SGA_v2.0_scaffold202G41465 Striga asiatica HOM05D000260 ORTHO05D000318 1.3e-08 64.7 156 30.8
CSS0032470 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.6e-08 64.3 167 27.5
Dinv34800 Davidia involucrata HOM05D000260 ORTHO05D000318 1.6e-08 64.3 135 33.3
HanXRQChr05g0131351 Helianthus annuus HOM05D000072 ORTHO05D000026 1.6e-08 64.3 135 27.4
Glyma.07G095200 Glycine max HOM05D000072 ORTHO05D000026 2.1e-08 63.9 116 31.9
VMungo0464G0601 Vigna mungo HOM05D000260 ORTHO05D004405 2.1e-08 63.9 121 29.8
CSS0010175 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 2.8e-08 63.5 167 27.5
Potri.010G145400 Populus trichocarpa HOM05D000260 ORTHO05D004405 2.8e-08 63.5 162 27.8
Prupe.3G146600 Prunus persica HOM05D000260 ORTHO05D000318 2.8e-08 63.5 209 27.8
Eucgr.B00783 Eucalyptus grandis HOM05D000260 ORTHO05D000318 3.7e-08 63.2 181 28.2
MD13G1037900 Malus domestica HOM05D000072 ORTHO05D000026 3.7e-08 63.2 179 27.4
QL10p025997 Quercus lobata HOM05D000260 ORTHO05D000318 3.7e-08 63.2 143 32.9
HPP92_000488 Vanilla planifolia HOM05D000072 ORTHO05D000026 3.7e-08 63.2 129 32.6
Aqoxy2G03891 Aquilegia oxysepala HOM05D000072 ORTHO05D000026 4.8e-08 62.8 124 31.5
RcHm_v2.0_Chr2g0166301 Rosa chinensis HOM05D000260 ORTHO05D000318 4.8e-08 62.8 130 31.5
Manes.02G070200 Manihot esculenta HOM05D000072 ORTHO05D000026 6.2e-08 62.4 126 34.1
Hund02379 Selenicereus undatus HOM05D000260 ORTHO05D000318 6.2e-08 62.4 132 30.3
Dinv28134 Davidia involucrata HOM05D000260 ORTHO05D004405 8.1e-08 62.0 108 33.3
CSS0023814 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.1e-07 61.6 113 31.9
DCAR_015151 Daucus carota HOM05D000072 ORTHO05D000026 1.1e-07 61.6 188 26.1
CSS0035733 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 1.4e-07 61.2 113 32.7
Nitab4.5_0009862g0020 Nicotiana tabacum HOM05D000072 ORTHO05D000026 1.4e-07 61.2 90 32.2
PGR004G0863 Punica granatum HOM05D000072 ORTHO05D000026 1.4e-07 61.2 155 35.5
Sabra10G0090700 Salix brachista HOM05D000260 ORTHO05D004405 1.4e-07 61.2 114 28.9
vmacro01395 Vaccinium macrocarpon HOM05D000260 ORTHO05D000318 1.4e-07 61.2 185 25.9
CSS0025089 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D000318 1.8e-07 60.8 143 30.8
Glyma.07G096000 Glycine max HOM05D000260 ORTHO05D004405 2.4e-07 60.5 116 30.2
Glyma.09G116300 Glycine max HOM05D000260 ORTHO05D000318 2.4e-07 60.5 136 30.1
Lsat_1_v5_gn_2_81040 Lactuca sativa HOM05D000260 ORTHO05D000318 2.4e-07 60.5 118 31.4
RcHm_v2.0_Chr7g0186021 Rosa chinensis HOM05D000260 ORTHO05D004405 3.1e-07 60.1 158 31.0
Duzib133G0230 Durio zibethinus HOM05D000072 ORTHO05D000026 4.0e-07 59.7 132 31.1
Eucgr.B00782 Eucalyptus grandis HOM05D000072 ORTHO05D000026 4.0e-07 59.7 130 27.7
QL10p026060 Quercus lobata HOM05D000260 ORTHO05D004405 4.0e-07 59.7 126 27.0
QL10p026197 Quercus lobata HOM05D000260 ORTHO05D004405 4.0e-07 59.7 107 31.8
Sabra10G0091300 Salix brachista HOM05D000260 ORTHO05D000318 4.0e-07 59.7 143 27.3
PGSC0003DMG400015839 Solanum tuberosum HOM05D000260 ORTHO05D004405 5.3e-07 59.3 155 27.7
PGSC0003DMG401015827 Solanum tuberosum HOM05D000260 ORTHO05D004405 5.3e-07 59.3 155 27.7
SGA_v2.0_scaffold49G18115 Striga asiatica HOM05D000260 ORTHO05D000318 5.3e-07 59.3 115 34.8
CSS0035427 Camellia sinensis var. sinensis HOM05D000260 ORTHO05D004405 9.0e-07 58.5 115 32.2
Lalb_Chr14g0371001 Lupinus albus HOM05D000260 ORTHO05D004405 9.0e-07 58.5 156 28.8
Psat1g035960 Pisum sativum HOM05D000260 ORTHO05D004405 9.0e-07 58.5 102 34.3
Prupe.1G315000 Prunus persica HOM05D000072 ORTHO05D000026 9.0e-07 58.5 140 29.3
VMungo0251G0566 Vigna mungo HOM05D000072 ORTHO05D000026 9.0e-07 58.5 131 29.0
ECA238G0243 Erigeron canadensis HOM05D000260 ORTHO05D000318 1.2e-06 58.2 112 30.4
Prupe.1G315900 Prunus persica HOM05D000260 ORTHO05D000318 1.2e-06 58.2 140 29.3
RcHm_v2.0_Chr7g0185911 Rosa chinensis HOM05D000072 ORTHO05D000026 1.2e-06 58.2 156 29.5
Cfa010422 Carpinus fangiana HOM05D000072 ORTHO05D000026 1.5e-06 57.8 116 28.4
CiPaw.16G088300 Carya illinoinensis HOM05D000260 ORTHO05D000318 1.5e-06 57.8 143 30.1
Sabra10G0090900 Salix brachista HOM05D000260 ORTHO05D004405 1.5e-06 57.8 150 24.7
Zm00001eb156230 Zea mays HOM05D000260 ORTHO05D004405 1.5e-06 57.8 147 30.6
Actinidia38367 Actinidia chinensis HOM05D000260 ORTHO05D000318 2.0e-06 57.4 118 27.1
FAN12G3163 Fragaria x ananassa HOM05D000072 ORTHO05D000026 2.0e-06 57.4 137 26.3
Glyma.19G073200 Glycine max HOM05D000260 ORTHO05D000318 2.0e-06 57.4 147 29.3
Eucgr.F02102 Eucalyptus grandis HOM05D000260 ORTHO05D000318 2.6e-06 57.0 116 36.2
MSTRG.23587 Avicennia marina HOM05D000072 ORTHO05D000026 3.4e-06 56.6 97 36.1
Haze_18717 Corylus avellana HOM05D000072 ORTHO05D000026 3.4e-06 56.6 137 28.5
FvH4_4g26961 Fragaria vesca HOM05D000072 ORTHO05D000026 3.4e-06 56.6 176 24.4
Ah.01g016910 Amaranthus hybridus HOM05D000072 ORTHO05D000026 4.5e-06 56.2 123 25.2
Aqoxy6G02586 Aquilegia oxysepala HOM05D000072 ORTHO05D000026 4.5e-06 56.2 112 33.0
Peaxi162Scf00394g00824 Petunia axillaris HOM05D000072 ORTHO05D000026 4.5e-06 56.2 164 26.2
Manes.02G070600 Manihot esculenta HOM05D000260 ORTHO05D000318 5.8e-06 55.8 144 29.9
Psat6g038800 Pisum sativum HOM05D000072 ORTHO05D000026 5.8e-06 55.8 217 25.3
QL10p026004 Quercus lobata HOM05D000260 ORTHO05D000318 5.8e-06 55.8 143 30.8
arahy.Tifrunner.gnm1.ann1.Z64X3Y Arachis hypogaea HOM05D000072 ORTHO05D000026 7.6e-06 55.5 69 37.7
DCAR_007260 Daucus carota HOM05D000260 ORTHO05D000318 1.0e-05 55.1 96 33.3
HanXRQChr17g0560401 Helianthus annuus HOM05D000072 ORTHO05D000026 1.0e-05 55.1 120 28.3
Lj5g0001414 Lotus japonicus HOM05D000072 ORTHO05D000026 1.0e-05 55.1 131 29.0


User provided reference genes

Program Settings