Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.3e-128 462.2 231 100.0
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 1.2e-105 386.7 198 98.0
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 7.8e-68 261.2 200 66.0
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 3.5e-60 235.7 196 62.8
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.3e-59 233.8 196 58.2
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.7e-59 233.4 195 61.0
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 5.1e-59 231.9 196 59.2
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 8.6e-59 231.1 196 58.7
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.5e-58 230.3 196 59.2
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.5e-58 229.6 195 60.0
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 7.3e-58 228.0 196 57.7
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 6.2e-57 224.9 196 57.1
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 6.8e-56 221.5 196 57.7
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 6.8e-56 221.5 196 57.7
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.0e-55 219.9 196 57.1
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.0e-55 219.9 195 56.9
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 4.4e-55 218.8 196 53.6
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 9.9e-55 217.6 196 53.1
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 9.9e-55 217.6 196 53.1
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 2.9e-54 216.1 228 49.6
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.9e-54 215.3 196 57.1
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 1.1e-53 214.2 196 56.6
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.4e-53 213.8 196 53.6
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.4e-53 213.0 195 59.0
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.4e-53 213.0 196 56.1
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 4.1e-53 212.2 196 56.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 4.1e-53 212.2 196 55.6
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.4e-53 211.8 196 52.6
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 9.2e-53 211.1 196 57.7
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 2.7e-52 209.5 196 55.1
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.8e-52 208.0 195 55.9
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 7.8e-52 208.0 196 51.5
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 7.8e-52 208.0 196 55.6
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.0e-51 207.6 196 55.1
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.3e-51 207.2 197 53.3
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.7e-51 206.8 214 50.9
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 3.9e-51 205.7 196 54.6
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 3.9e-51 205.7 196 55.1
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 3.9e-51 205.7 228 50.0
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 3.9e-51 205.7 195 55.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 3.9e-51 205.7 196 55.6
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 5.1e-51 205.3 196 53.6
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.9e-50 203.4 196 54.1
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 2.5e-50 203.0 197 51.8
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 9.5e-50 201.1 198 54.5
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 9.5e-50 201.1 196 54.1
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 1.6e-49 200.3 196 53.1
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 2.1e-49 199.9 196 54.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 2.8e-49 199.5 196 52.6
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 4.7e-49 198.7 196 54.6
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 4.7e-49 198.7 228 49.1
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 4.7e-49 198.7 196 52.6
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 6.2e-49 198.4 196 52.0
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.4e-48 197.2 196 54.6
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.4e-48 197.2 201 52.2
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.8e-48 196.8 213 50.2
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 6.8e-48 194.9 200 52.0
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 6.8e-48 194.9 180 55.0
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 8.9e-48 194.5 179 53.6
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 1.5e-47 193.7 196 51.5
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 3.4e-47 192.6 180 56.1
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 4.4e-47 192.2 200 51.0
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 5.8e-47 191.8 200 51.0
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 7.6e-47 191.4 196 52.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 9.9e-47 191.0 196 52.6
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 1.3e-46 190.7 196 52.6
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.7e-46 190.3 195 52.8
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.2e-46 189.9 200 51.0
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 6.4e-46 188.3 196 51.5
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 8.4e-46 188.0 157 59.2
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-45 187.6 195 52.3
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.9e-45 186.8 197 51.8
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.2e-45 186.0 196 50.0
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 3.2e-45 186.0 196 52.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.2e-45 185.7 196 52.6
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 4.2e-45 185.7 196 51.0
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 7.1e-45 184.9 197 52.3
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.6e-44 183.7 196 51.0
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.6e-44 183.7 196 50.0
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 2.7e-44 183.0 196 51.5
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 4.6e-44 182.2 196 52.0
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 6.0e-44 181.8 196 51.0
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 3.0e-43 179.5 216 49.5
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 3.9e-43 179.1 158 56.3
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 5.1e-43 178.7 197 50.3
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 5.1e-43 178.7 196 49.0
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 8.7e-43 177.9 144 63.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 8.7e-43 177.9 196 45.4
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.6e-42 175.3 152 57.2
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 5.6e-42 175.3 200 46.0
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 9.6e-42 174.5 196 50.5
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 3.1e-40 169.5 174 54.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.4e-39 166.0 196 45.9
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 5.8e-39 165.2 196 45.9
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 7.6e-39 164.9 168 56.0
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.3e-38 164.1 196 45.9
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.3e-38 164.1 196 45.9
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 8.4e-38 161.4 196 44.9
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.2e-36 157.5 161 50.3
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 1.2e-36 157.5 161 50.3
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 1.2e-36 157.5 161 50.3
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.6e-36 157.1 196 45.9
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.6e-36 157.1 196 43.9
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 6.0e-36 155.2 161 49.7
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 6.0e-36 155.2 161 49.7
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 6.0e-36 155.2 140 55.0
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 7.8e-36 154.8 161 49.1
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.6e-33 147.1 271 36.2
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.2e-33 145.2 161 50.3
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 4.9e-30 135.6 139 48.2
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 4.9e-30 135.6 151 47.0
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.9e-29 133.7 158 45.6
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 1.1e-24 117.9 165 43.0
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.4e-24 117.5 110 51.8
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.2e-22 110.2 105 52.4
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 2.3e-19 100.1 160 37.5
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 4.3e-18 95.9 140 43.6
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.5e-15 87.4 115 47.8
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.6e-09 67.4 89 49.4
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.4e-08 63.5 97 48.5


User provided reference genes

Program Settings