Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 3.0e-90 335.1 161 100.0
ATR0693G174 Amborella trichopoda HOM05D004838 ORTHO05D005373 5.1e-34 148.3 97 83.5
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 2.4e-15 86.3 88 54.5
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 1.0e-13 80.9 92 53.3
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 3.8e-13 79.0 90 55.6
Nn2g11248 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.2e-12 74.7 84 48.8
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 9.4e-12 74.3 94 51.1
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 1.2e-11 73.9 92 47.8
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 2.1e-11 73.2 96 51.0
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 1.8e-10 70.1 92 47.8
Lsat_1_v5_gn_3_40521 Lactuca sativa HOM05D000831 ORTHO05D000660 1.8e-10 70.1 85 48.2
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 3.0e-10 69.3 95 46.3
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 3.9e-10 68.9 95 44.2
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 8.8e-10 67.8 95 48.4
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 1.1e-09 67.4 88 44.3
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.1e-09 67.4 95 48.4
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 4.4e-09 65.5 91 42.9
HanXRQChr17g0542271 Helianthus annuus HOM05D000831 ORTHO05D000660 5.7e-09 65.1 85 44.7
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 9.7e-09 64.3 85 49.4
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 9.7e-09 64.3 96 43.8
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.7e-08 63.5 102 40.2
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 2.2e-08 63.2 88 42.0
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 2.8e-08 62.8 89 50.6
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 3.7e-08 62.4 98 40.8
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 3.7e-08 62.4 95 43.2
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 3.7e-08 62.4 93 46.2
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 3.7e-08 62.4 94 44.7
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 3.7e-08 62.4 94 45.7
CANSAT11G1852 Cannabis sativa HOM05D000831 ORTHO05D000660 4.8e-08 62.0 85 40.0
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 4.8e-08 62.0 91 44.0
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 4.8e-08 62.0 84 41.7
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 4.8e-08 62.0 84 44.0
Thecc.06G200800 Theobroma cacao HOM05D004838 ORTHO05D005373 4.8e-08 62.0 84 42.9
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 6.3e-08 61.6 93 40.9
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 8.2e-08 61.2 96 44.8
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 8.2e-08 61.2 96 43.8
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 8.2e-08 61.2 89 42.7
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 8.2e-08 61.2 95 47.4
Thecc.02G170800 Theobroma cacao HOM05D000831 ORTHO05D000660 8.2e-08 61.2 85 40.0
MSTRG.12933 Avicennia marina HOM05D000831 ORTHO05D000660 1.1e-07 60.8 87 43.7
MSTRG.15193 Avicennia marina HOM05D000831 ORTHO05D000660 1.1e-07 60.8 88 43.2
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.1e-07 60.8 95 45.3
TAR627G0747 Trochodendron aralioides HOM05D000831 ORTHO05D000660 1.1e-07 60.8 86 44.2
CSS0040678 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 1.4e-07 60.5 87 43.7
CSS0047300 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 1.4e-07 60.5 87 43.7
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.4e-07 60.5 94 43.6
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.4e-07 60.5 94 43.6
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.4e-07 60.5 96 41.7
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 1.4e-07 60.5 94 43.6
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 1.4e-07 60.5 95 47.4
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 1.4e-07 60.5 95 47.4
CANSAT11G0733 Cannabis sativa HOM05D000831 ORTHO05D000660 1.8e-07 60.1 85 40.0
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.8e-07 60.1 90 48.9
Dinv13827 Davidia involucrata HOM05D000831 ORTHO05D000660 2.4e-07 59.7 85 42.4
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 2.4e-07 59.7 86 45.3
Solyc07g054770.1 Solanum lycopersicum HOM05D000831 ORTHO05D000660 2.4e-07 59.7 87 39.1
CSS0037125 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 3.1e-07 59.3 87 43.7
CSS0048593 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 3.1e-07 59.3 87 42.5
Cfa014533 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.1e-07 59.3 86 41.9
Cfa014536 Carpinus fangiana HOM05D000831 ORTHO05D000660 3.1e-07 59.3 86 41.9
Haze_06585 Corylus avellana HOM05D004838 ORTHO05D005373 3.1e-07 59.3 85 42.4
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 3.1e-07 59.3 87 43.7
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 3.1e-07 59.3 93 43.0
Manes.03G117300 Manihot esculenta HOM05D000831 ORTHO05D000660 3.1e-07 59.3 85 41.2
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 3.1e-07 59.3 92 42.4
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.1e-07 58.9 100 43.0
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 4.1e-07 58.9 92 42.4
COL.COLO4_13653 Corchorus olitorius HOM05D000831 ORTHO05D000660 4.1e-07 58.9 86 40.7
Dinv15499 Davidia involucrata HOM05D000831 ORTHO05D000660 4.1e-07 58.9 86 40.7
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 4.1e-07 58.9 93 37.6
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 5.3e-07 58.5 94 41.5
AUR62029299 Chenopodium quinoa HOM05D000831 ORTHO05D000660 5.3e-07 58.5 83 41.0
Lsat_1_v5_gn_3_40481 Lactuca sativa HOM05D000831 ORTHO05D000660 5.3e-07 58.5 81 42.0
TAR626G1434 Trochodendron aralioides HOM05D000831 ORTHO05D000660 5.3e-07 58.5 87 41.4
CSS0018979 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 7.0e-07 58.2 92 39.1
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 7.0e-07 58.2 84 40.5
Medtr2g089940 Medicago truncatula HOM05D000831 ORTHO05D000660 7.0e-07 58.2 89 43.8
Medtr2g089960 Medicago truncatula HOM05D000831 ORTHO05D000660 7.0e-07 58.2 89 43.8
Medtr2g089985 Medicago truncatula HOM05D000831 ORTHO05D000660 7.0e-07 58.2 89 43.8
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 7.0e-07 58.2 88 39.8
Prupe.3G229800 Prunus persica HOM05D000831 ORTHO05D000660 7.0e-07 58.2 85 42.4
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 7.0e-07 58.2 95 41.1
CSS0015806 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 9.1e-07 57.8 87 42.5
CSS0022903 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 9.1e-07 57.8 87 42.5
CSS0049002 Camellia sinensis var. sinensis HOM05D000831 ORTHO05D000660 9.1e-07 57.8 87 42.5
Hma1.2p1_0565F.1_g179640 Hydrangea macrophylla HOM05D000831 ORTHO05D000660 9.1e-07 57.8 89 39.3
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 9.1e-07 57.8 93 41.9
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 9.1e-07 57.8 87 41.4
Sopen07g028700 Solanum pennellii HOM05D000831 ORTHO05D000660 9.1e-07 57.8 87 37.9
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 9.1e-07 57.8 89 42.7
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 1.2e-06 57.4 93 44.1
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 1.2e-06 57.4 94 45.7
Nn1g07826 Nelumbo nucifera HOM05D000831 ORTHO05D000660 1.2e-06 57.4 89 38.2
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-06 57.0 95 41.1
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-06 57.0 93 39.8
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 1.6e-06 57.0 93 41.9
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.6e-06 57.0 86 43.0
HanXRQChr17g0542231 Helianthus annuus HOM05D000831 ORTHO05D000660 1.6e-06 57.0 82 42.7
Oeu046194.1 Olea europaea HOM05D000831 ORTHO05D000660 1.6e-06 57.0 86 37.2
QL05p081093 Quercus lobata HOM05D004838 ORTHO05D005373 1.6e-06 57.0 84 42.9
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 1.6e-06 57.0 93 43.0
THA.LOC104804066 Tarenaya hassleriana HOM05D004838 ORTHO05D005373 1.6e-06 57.0 84 41.7
TAR627G0264 Trochodendron aralioides HOM05D000831 ORTHO05D000660 1.6e-06 57.0 91 40.7
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 2.0e-06 56.6 96 40.6
Cfa014532 Carpinus fangiana HOM05D000831 ORTHO05D000660 2.0e-06 56.6 86 40.7
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 2.0e-06 56.6 92 43.5
vmacro12260 Vaccinium macrocarpon HOM05D000831 ORTHO05D000660 2.0e-06 56.6 87 37.9
Cfa014535 Carpinus fangiana HOM05D000831 ORTHO05D000660 2.6e-06 56.2 86 40.7
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.6e-06 56.2 89 40.4
Thecc.07G069900 Theobroma cacao HOM05D000831 ORTHO05D000660 2.6e-06 56.2 88 40.9
CDE10G0022 Ceratophyllum demersum HOM05D004838 ORTHO05D005373 3.5e-06 55.8 84 40.5
Rhsim04G0062800 Rhododendron simsii HOM05D000831 ORTHO05D000660 3.5e-06 55.8 87 42.5
Rhsim06G0152500 Rhododendron simsii HOM05D000831 ORTHO05D000660 3.5e-06 55.8 92 42.4
TAR627G0348 Trochodendron aralioides HOM05D000831 ORTHO05D000660 3.5e-06 55.8 86 41.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 4.5e-06 55.5 92 41.3
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 4.5e-06 55.5 94 43.6
TAR627G0398 Trochodendron aralioides HOM05D000831 ORTHO05D000660 4.5e-06 55.5 91 40.7
TAR627G1040 Trochodendron aralioides HOM05D000831 ORTHO05D000660 4.5e-06 55.5 91 40.7
CAN.G508.8 Capsicum annuum HOM05D000831 ORTHO05D000660 5.9e-06 55.1 87 37.9
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.9e-06 55.1 94 44.7
Thecc.02G171000 Theobroma cacao HOM05D000831 ORTHO05D000660 5.9e-06 55.1 87 41.4
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 7.7e-06 54.7 88 40.9
Nn1g07825 Nelumbo nucifera HOM05D000831 ORTHO05D000660 7.7e-06 54.7 88 39.8
Nn1g07832 Nelumbo nucifera HOM05D000831 ORTHO05D000660 7.7e-06 54.7 88 39.8
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 7.7e-06 54.7 91 39.6
RcHm_v2.0_Chr2g0161481 Rosa chinensis HOM05D000831 ORTHO05D000660 7.7e-06 54.7 84 38.1
Sc21g0002500 Simmondsia chinensis HOM05D004838 ORTHO05D005373 7.7e-06 54.7 83 41.0
vmacro12259 Vaccinium macrocarpon HOM05D000831 ORTHO05D000660 7.7e-06 54.7 89 42.7


User provided reference genes

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