Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0850G001 Amborella trichopoda HOM05D003427 ORTHO05D003927 3.3e-166 588.2 273 100.0
ATR0807G044 Amborella trichopoda HOM05D003427 ORTHO05D003927 2.1e-59 233.4 268 50.7
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 3.4e-22 109.8 270 32.2
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 2.2e-21 107.1 268 29.1
MD16G1151600 Malus domestica HOM05D003427 ORTHO05D003927 3.2e-20 103.2 183 35.0
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 3.2e-20 103.2 266 28.9
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 3.2e-20 103.2 178 36.5
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.2e-19 101.3 272 28.3
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.6e-19 100.9 266 28.6
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 2.1e-19 100.5 272 29.4
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 3.5e-19 99.8 267 28.8
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 4.6e-19 99.4 272 27.9
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 6.0e-19 99.0 275 28.4
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 7.9e-19 98.6 269 28.6
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 7.9e-19 98.6 265 29.4
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 7.9e-19 98.6 270 29.3
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 7.9e-19 98.6 272 29.0
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 7.9e-19 98.6 273 29.7
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.0e-18 98.2 266 28.9
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 1.0e-18 98.2 264 29.2
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 1.0e-18 98.2 259 30.1
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 1.3e-18 97.8 260 30.8
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 1.3e-18 97.8 265 28.7
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 1.3e-18 97.8 269 28.3
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 1.3e-18 97.8 272 28.7
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 1.8e-18 97.4 267 30.3
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 2.3e-18 97.1 272 29.4
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 2.3e-18 97.1 266 28.2
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 2.3e-18 97.1 266 30.1
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 3.0e-18 96.7 260 30.4
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 3.0e-18 96.7 269 28.6
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 3.0e-18 96.7 269 27.9
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 3.0e-18 96.7 295 26.4
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 3.9e-18 96.3 270 29.3
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 3.9e-18 96.3 274 27.0
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 3.9e-18 96.3 272 26.8
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 3.9e-18 96.3 227 30.8
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 3.9e-18 96.3 267 27.3
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 5.1e-18 95.9 272 29.8
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 6.7e-18 95.5 274 27.0
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 6.7e-18 95.5 269 28.3
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 6.7e-18 95.5 269 28.3
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 6.7e-18 95.5 266 27.8
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 6.7e-18 95.5 272 28.3
ATR0807G213 Amborella trichopoda HOM05D003427 ORTHO05D003927 8.7e-18 95.1 66 71.2
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 8.7e-18 95.1 269 27.9
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 8.7e-18 95.1 268 29.1
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.1e-17 94.7 291 27.8
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 1.5e-17 94.4 267 28.1
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 1.5e-17 94.4 271 28.8
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 1.5e-17 94.4 242 30.6
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.5e-17 94.4 271 28.4
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 1.5e-17 94.4 266 28.2
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 3.3e-17 93.2 272 27.2
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 3.3e-17 93.2 272 27.2
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 4.3e-17 92.8 266 29.3
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 4.3e-17 92.8 268 28.4
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 4.3e-17 92.8 272 28.7
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 5.7e-17 92.4 271 28.4
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 7.4e-17 92.0 266 28.9
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 7.4e-17 92.0 266 28.9
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 1.3e-16 91.3 271 27.7
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 1.6e-16 90.9 270 27.4
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 1.6e-16 90.9 81 55.6
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 1.6e-16 90.9 272 27.9
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.6e-16 90.9 270 27.8
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 2.1e-16 90.5 267 27.3
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 2.8e-16 90.1 267 27.0
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 2.8e-16 90.1 269 27.5
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 2.8e-16 90.1 270 27.8
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 2.8e-16 90.1 276 30.8
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 2.8e-16 90.1 266 28.2
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 2.8e-16 90.1 272 27.9
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 3.7e-16 89.7 269 27.5
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 4.8e-16 89.4 69 56.5
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 4.8e-16 89.4 81 55.6
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 4.8e-16 89.4 268 28.4
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 6.2e-16 89.0 267 26.6
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 6.2e-16 89.0 266 29.3
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 6.2e-16 89.0 271 26.6
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 6.2e-16 89.0 266 27.4
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 6.2e-16 89.0 267 27.0
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 6.2e-16 89.0 270 27.4
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 8.2e-16 88.6 264 28.8
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 8.2e-16 88.6 268 28.4
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 8.2e-16 88.6 269 27.5
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 1.1e-15 88.2 81 51.9
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 1.1e-15 88.2 266 28.9
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.1e-15 88.2 266 29.3
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 1.1e-15 88.2 268 29.1
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 1.4e-15 87.8 270 27.4
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 1.4e-15 87.8 267 27.7
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 1.4e-15 87.8 268 28.0
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 1.8e-15 87.4 269 26.4
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 1.8e-15 87.4 266 27.8
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 1.8e-15 87.4 268 26.9
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 2.4e-15 87.0 267 27.0
Lj4A597G14 Lonicera japonica HOM05D003427 ORTHO05D003927 3.1e-15 86.7 69 55.1
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 4.1e-15 86.3 260 28.5
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 5.3e-15 85.9 270 27.0
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 6.9e-15 85.5 270 28.1
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 6.9e-15 85.5 268 25.7
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 6.9e-15 85.5 271 25.8
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 6.9e-15 85.5 270 27.4
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 9.0e-15 85.1 168 35.7
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 1.2e-14 84.7 67 56.7
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 1.5e-14 84.3 81 51.9
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.5e-14 84.3 259 28.2
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 2.0e-14 84.0 271 27.3
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 2.0e-14 84.0 264 26.1
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 3.4e-14 83.2 264 26.5
Hma1.2p1_0009F.1_g006310 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 4.5e-14 82.8 69 55.1
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.0e-13 81.6 275 26.9
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 1.3e-13 81.3 264 26.1
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 1.3e-13 81.3 264 26.1
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 1.7e-13 80.9 223 30.0
Migut.C01160 Erythranthe guttata HOM05D003427 ORTHO05D003927 2.9e-13 80.1 178 33.7
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 3.8e-13 79.7 81 50.6
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 5.0e-13 79.3 81 48.1
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 5.0e-13 79.3 136 38.2
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 5.0e-13 79.3 73 50.7
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 6.5e-13 79.0 84 47.6
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 1.4e-12 77.8 68 52.9
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 1.4e-12 77.8 63 55.6
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 1.4e-12 77.8 63 55.6
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 1.4e-12 77.8 266 27.1
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 1.9e-12 77.4 63 55.6
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 1.9e-12 77.4 79 50.6
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 1.9e-12 77.4 271 24.4
BcaC02g07297 Brassica carinata HOM05D003427 ORTHO05D003927 4.2e-12 76.3 63 54.0
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 4.2e-12 76.3 66 54.5
HPP92_012126 Vanilla planifolia HOM05D003427 ORTHO05D003927 7.1e-12 75.5 61 60.7
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 9.3e-12 75.1 62 56.5
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 1.2e-11 74.7 83 45.8
MD15G1354200 Malus domestica HOM05D003427 ORTHO05D003927 1.6e-11 74.3 83 44.6
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 2.1e-11 73.9 77 48.1
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 2.1e-11 73.9 252 26.6
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 2.7e-11 73.6 65 50.8
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 7.9e-11 72.0 59 55.9
arahy.Tifrunner.gnm1.ann1.WPHY5E Arachis hypogaea HOM05D003427 ORTHO05D003927 1.0e-10 71.6 69 49.3
arahy.Tifrunner.gnm1.ann1.T4K93Z Arachis hypogaea HOM05D003427 ORTHO05D003927 1.8e-10 70.9 69 47.8
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 1.8e-10 70.9 59 54.2
arahy.Tifrunner.gnm1.ann1.1IHI4J Arachis hypogaea HOM05D003427 ORTHO05D003927 3.9e-10 69.7 69 46.4
arahy.Tifrunner.gnm1.ann1.R476QE Arachis hypogaea HOM05D003427 ORTHO05D003927 3.9e-10 69.7 69 46.4
Ah.05g172210 Amaranthus hybridus HOM05D003427 ORTHO05D003927 1.9e-09 67.4 62 48.4
MD05G1028300 Malus domestica HOM05D003427 ORTHO05D003927 2.5e-09 67.0 59 49.2
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 4.3e-09 66.2 268 25.0
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 5.7e-09 65.9 58 53.4
MD08G1121700 Malus domestica HOM05D003427 ORTHO05D003927 3.7e-08 63.2 229 26.6
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 8.2e-08 62.0 254 24.4
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 8.2e-08 62.0 240 28.3
vmacro12551 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 2.4e-07 60.5 57 52.6
Atru.chr13.1350 Acer truncatum HOM05D003427 ORTHO05D003927 3.1e-07 60.1 114 37.7
Nitab4.5_0001273g0070 Nicotiana tabacum HOM05D003427 ORTHO05D003927 3.1e-07 60.1 60 46.7
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 4.1e-07 59.7 155 33.5
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 5.3e-07 59.3 60 45.0
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 9.0e-07 58.5 136 30.1
Pp3c6_15270 Physcomitrium patens HOM05D003427 ORTHO05D003927 9.0e-07 58.5 56 50.0
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 2.6e-06 57.0 92 37.0
unitig_32.g11457 Utricularia gibba HOM05D003427 ORTHO05D003927 5.9e-06 55.8 59 45.8
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 1.0e-05 55.1 56 46.4


User provided reference genes

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