Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 9.4e-253 876.3 426 100.0
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 3.1e-139 499.2 332 72.6
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 1.3e-137 493.8 418 60.5
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 1.7e-137 493.4 357 66.4
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.0e-134 482.3 341 67.2
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 4.4e-133 478.8 331 69.5
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 2.2e-132 476.5 331 68.3
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 8.2e-132 474.6 321 71.7
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.0e-129 467.6 333 69.1
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.9e-129 466.1 391 59.6
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.8e-129 465.7 332 68.4
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 6.5e-129 464.9 325 69.5
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 8.5e-129 464.5 331 66.5
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 8.5e-129 464.5 331 67.1
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 2.7e-127 459.5 321 68.5
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.0e-126 457.6 342 65.8
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 1.4e-126 457.2 331 66.2
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 4.0e-126 455.7 331 66.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 4.0e-126 455.7 321 68.2
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 2.0e-125 453.4 325 67.4
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 7.5e-125 451.4 341 66.0
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.7e-124 450.3 337 66.5
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 4.8e-124 448.7 347 63.1
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 7.0e-123 444.9 370 63.5
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 2.0e-122 443.4 359 62.7
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 2.0e-122 443.4 323 65.6
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 3.5e-122 442.6 365 62.5
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 5.9e-122 441.8 331 65.6
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 1.0e-121 441.0 340 62.9
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 2.3e-121 439.9 340 62.9
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 2.9e-121 439.5 325 66.2
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 3.8e-121 439.1 331 63.1
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 3.8e-121 439.1 360 63.1
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 6.6e-121 438.3 321 65.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.1e-120 437.6 350 61.4
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 1.1e-120 437.6 327 65.1
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.5e-120 437.2 325 64.6
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 2.5e-120 436.4 325 65.2
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 2.5e-120 436.4 252 78.6
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 7.2e-120 434.9 359 59.3
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.2e-120 434.9 321 64.2
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 1.2e-119 434.1 358 58.9
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 3.6e-119 432.6 323 63.2
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 4.7e-119 432.2 251 77.7
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 8.0e-119 431.4 351 63.0
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 1.4e-118 430.6 322 66.5
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.3e-118 429.9 321 65.1
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.3e-118 429.9 325 63.7
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 3.0e-118 429.5 274 74.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 3.0e-118 429.5 335 62.1
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 4.0e-118 429.1 358 60.3
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 5.2e-118 428.7 329 62.3
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 5.2e-118 428.7 322 65.2
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 8.9e-118 427.9 324 64.2
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.5e-117 427.2 325 65.2
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 2.0e-117 426.8 323 64.4
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 2.0e-117 426.8 323 64.4
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 4.4e-117 425.6 322 64.9
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 5.7e-117 425.2 324 64.2
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 5.7e-117 425.2 324 64.2
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 5.7e-117 425.2 324 64.2
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 7.5e-117 424.9 252 76.2
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.7e-116 423.7 325 62.2
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.8e-116 422.9 417 54.4
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.4e-115 420.6 329 63.2
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 2.4e-115 419.9 334 64.4
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.1e-115 419.1 313 66.8
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 4.1e-115 419.1 325 63.1
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 4.1e-115 419.1 333 61.3
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 4.1e-115 419.1 322 65.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-114 416.8 320 63.1
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 5.9e-114 415.2 322 62.7
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 5.9e-114 415.2 312 64.4
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.9e-113 412.9 321 62.9
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 2.9e-113 412.9 326 63.2
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 1.6e-111 407.1 356 58.1
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.8e-111 406.4 318 62.6
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.8e-111 406.4 337 58.5
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.0e-110 404.4 323 62.8
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.0e-109 400.2 245 75.1
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 1.4e-107 394.0 325 63.1
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.9e-107 393.7 378 56.1
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.2e-107 392.9 382 55.5
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 6.2e-103 378.6 325 57.8
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 3.7e-100 369.4 362 54.7
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.7e-100 369.4 323 60.1
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 4.9e-100 369.0 232 71.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 7.0e-99 365.2 318 58.5
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.6e-98 364.0 370 52.2
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.6e-98 364.0 323 55.1
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 8.6e-97 358.2 230 70.9
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 1.1e-96 357.8 321 58.9
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 4.0e-94 349.4 315 56.8
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 2.4e-91 340.1 397 46.6
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 2.5e-88 330.1 192 77.1
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 9.5e-88 328.2 254 60.6
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 2.1e-87 327.0 298 54.4
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 5.2e-86 322.4 278 55.8
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 7.8e-82 308.5 184 76.1
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 5.1e-81 305.8 194 74.2
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 9.0e-78 295.0 279 52.0
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 1.2e-74 284.6 292 46.6
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 5.1e-73 279.3 196 63.8
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.4e-70 271.2 315 49.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 4.6e-66 256.1 227 54.2
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 3.9e-57 226.5 123 78.9
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 4.0e-54 216.5 124 75.0
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 5.3e-54 216.1 296 43.6
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 1.4e-46 191.4 113 77.9
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 2.0e-45 187.6 110 77.3
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 1.3e-44 184.9 192 52.1
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 5.5e-43 179.5 190 51.6
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 3.0e-41 173.7 188 51.1
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 1.1e-38 165.2 270 41.5
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 9.1e-38 162.2 99 74.7
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 3.2e-35 153.7 181 43.1
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 2.7e-34 150.6 176 48.3
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 5.1e-33 146.4 183 47.0
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.9e-27 127.9 150 46.0
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.6e-26 123.6 198 39.9
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 8.8e-25 119.0 62 79.0
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 8.2e-23 112.5 98 59.2
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 1.1e-22 112.1 300 28.7
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 7.0e-22 109.4 75 65.3
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 5.0e-20 103.2 61 80.3
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 2.5e-19 100.9 63 77.8
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.5e-19 100.9 55 70.9
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.6e-18 98.2 78 61.5
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 4.0e-17 93.6 197 36.0
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-15 88.2 80 61.2
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 2.7e-13 80.9 50 72.0
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 3.2e-11 73.9 55 67.3
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 3.6e-10 70.5 200 28.5
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 6.1e-10 69.7 39 84.6
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 1.2e-08 65.5 50 62.0
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 9.8e-08 62.4 92 40.2
SEGI_17331 Sequoiadendron giganteum HOM05D002799 ORTHO05D385286 3.1e-06 57.4 99 38.4


User provided reference genes

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