Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 5.8e-82 307.8 186 100.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 8.8e-38 161.0 176 50.0
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 2.0e-37 159.8 173 49.7
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 7.5e-37 157.9 175 49.7
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.7e-36 156.8 176 49.4
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 2.2e-36 156.4 176 49.4
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.2e-36 156.4 179 50.3
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 3.7e-36 155.6 170 48.8
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 4.8e-36 155.2 171 50.9
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 4.8e-36 155.2 95 78.9
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.1e-35 154.1 178 48.3
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 1.1e-35 154.1 178 50.0
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.8e-35 153.3 104 70.2
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.4e-35 152.9 179 46.4
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 4.1e-35 152.1 173 49.7
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 4.1e-35 152.1 174 49.4
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 5.3e-35 151.8 173 46.8
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.0e-35 151.4 174 51.1
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 7.0e-35 151.4 174 51.1
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 9.1e-35 151.0 109 64.2
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.2e-34 150.6 171 47.4
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 1.2e-34 150.6 110 65.5
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.2e-34 150.6 170 48.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 1.2e-34 150.6 170 48.2
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 1.6e-34 150.2 146 52.1
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 1.6e-34 150.2 146 52.1
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-34 149.8 95 72.6
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-34 149.8 95 72.6
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 2.7e-34 149.4 174 50.6
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 2.7e-34 149.4 164 48.2
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.5e-34 149.1 167 48.5
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 4.5e-34 148.7 178 46.6
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 4.5e-34 148.7 169 49.1
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 4.5e-34 148.7 96 70.8
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 4.5e-34 148.7 102 69.6
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 4.5e-34 148.7 98 70.4
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 5.9e-34 148.3 171 49.1
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 5.9e-34 148.3 89 75.3
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 5.9e-34 148.3 89 75.3
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 5.9e-34 148.3 171 49.1
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 5.9e-34 148.3 89 75.3
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.9e-34 148.3 95 71.6
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 5.9e-34 148.3 167 50.3
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 7.7e-34 147.9 146 51.4
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 1.3e-33 147.1 164 50.0
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-33 146.7 89 74.2
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.7e-33 146.7 89 75.3
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 1.7e-33 146.7 95 70.5
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.7e-33 146.7 169 47.9
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.2e-33 146.4 89 74.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 2.2e-33 146.4 93 74.2
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 2.2e-33 146.4 148 52.0
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.2e-33 146.4 89 75.3
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.8e-33 145.6 93 72.0
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 3.8e-33 145.6 95 70.5
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 3.8e-33 145.6 147 51.7
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 5.0e-33 145.2 98 67.3
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 5.0e-33 145.2 171 47.4
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 6.5e-33 144.8 89 70.8
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 6.5e-33 144.8 93 72.0
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.1e-32 144.1 173 48.6
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 1.1e-32 144.1 164 47.0
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.5e-32 143.7 147 60.5
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.5e-32 143.7 89 73.0
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.5e-32 143.7 93 71.0
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.5e-32 143.7 174 46.0
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 1.9e-32 143.3 102 67.6
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 1.9e-32 143.3 146 50.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 3.2e-32 142.5 96 68.8
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 3.2e-32 142.5 97 69.1
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 4.2e-32 142.1 93 71.0
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 4.2e-32 142.1 105 62.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 4.2e-32 142.1 118 55.9
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 5.5e-32 141.7 93 67.7
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 7.2e-32 141.4 88 70.5
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 9.4e-32 141.0 89 71.9
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 9.4e-32 141.0 145 49.7
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 1.2e-31 140.6 88 73.9
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.2e-31 140.6 98 65.3
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.2e-31 140.6 146 61.0
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 1.2e-31 140.6 89 70.8
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 1.6e-31 140.2 99 65.7
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 1.6e-31 140.2 190 43.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 1.6e-31 140.2 168 45.8
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.1e-31 139.8 102 65.7
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.1e-31 139.8 102 65.7
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.1e-31 139.8 102 65.7
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.1e-31 139.8 88 72.7
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 2.1e-31 139.8 88 71.6
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.7e-31 139.4 89 70.8
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.7e-31 139.4 89 70.8
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 2.7e-31 139.4 183 47.0
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 3.6e-31 139.0 174 46.6
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 3.6e-31 139.0 89 69.7
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 3.6e-31 139.0 149 51.0
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 4.7e-31 138.7 98 65.3
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 4.7e-31 138.7 88 69.3
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 4.7e-31 138.7 88 71.6
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 6.1e-31 138.3 96 68.8
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 8.0e-31 137.9 101 66.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 8.0e-31 137.9 109 58.7
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 1.0e-30 137.5 145 48.3
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 1.0e-30 137.5 145 48.3
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.0e-30 137.5 177 47.5
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 1.0e-30 137.5 101 66.3
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 1.0e-30 137.5 150 52.0
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.4e-30 137.1 172 44.8
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.4e-30 137.1 150 52.0
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 1.4e-30 137.1 109 56.0
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 1.4e-30 137.1 89 70.8
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 1.8e-30 136.7 176 44.3
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.3e-30 136.3 88 71.6
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 2.3e-30 136.3 148 48.0
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 3.0e-30 136.0 95 68.4
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 3.0e-30 136.0 149 48.3
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 3.0e-30 136.0 97 66.0
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 4.0e-30 135.6 88 69.3
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 8.8e-30 134.4 149 47.7
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.5e-29 133.7 101 63.4
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.0e-29 133.3 150 49.3
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 2.6e-29 132.9 88 68.2
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 3.4e-29 132.5 95 66.3
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 5.7e-29 131.7 102 61.8
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 5.7e-29 131.7 149 48.3
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.7e-28 130.2 181 44.2
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.8e-28 129.4 89 65.2
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 1.1e-27 127.5 103 62.1
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.1e-27 127.5 151 46.4
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 4.1e-27 125.6 89 62.9
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.2e-26 124.0 171 43.3
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 2.0e-26 123.2 87 64.4
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.7e-25 120.2 190 42.1
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 2.3e-25 119.8 241 34.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 2.3e-25 119.8 110 53.6
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 8.6e-25 117.9 170 41.2
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 8.6e-25 117.9 170 41.2
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.1e-24 117.5 93 60.2
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.9e-24 116.7 81 64.2
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 1.9e-24 116.7 89 59.6
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 6.1e-23 111.7 107 54.2
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 1.4e-22 110.5 104 52.9
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 3.4e-21 105.9 153 42.5
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 3.4e-21 105.9 88 58.0
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 4.4e-21 105.5 70 67.1
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 7.5e-21 104.8 89 58.4
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-20 103.2 72 63.9
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.2e-20 103.2 72 63.9
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 4.9e-20 102.1 298 29.9
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 5.9e-18 95.1 102 49.0
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.9e-17 92.4 123 40.7
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 4.3e-16 89.0 93 51.6
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.0e-14 84.3 57 73.7
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 1.4e-14 84.0 125 40.0
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 5.8e-13 78.6 57 63.2
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 7.5e-13 78.2 73 56.2
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 1.7e-12 77.0 114 40.4
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 2.2e-12 76.6 117 51.3
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.9e-12 75.5 46 73.9
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 9.2e-11 71.2 44 72.7
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.6e-10 70.5 118 39.0
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.0e-09 67.8 46 60.9
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.0e-09 67.8 44 63.6
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 1.0e-09 67.8 44 63.6
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.3e-09 67.4 84 41.7
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 1.5e-08 63.9 52 51.9


User provided reference genes

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