Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G179 Amborella trichopoda HOM05D005039 ORTHO05D006145 3.1e-257 891.3 469 100.0
Dinv29126 Davidia involucrata HOM05D005039 ORTHO05D006145 1.0e-239 833.2 469 91.7
Nn3g19238 Nelumbo nucifera HOM05D005039 ORTHO05D006145 1.8e-236 822.4 469 90.6
CANSAT21G2526 Cannabis sativa HOM05D005039 ORTHO05D006145 3.7e-234 814.7 469 89.3
Aqoxy1G03063 Aquilegia oxysepala HOM05D005039 ORTHO05D006145 8.2e-234 813.5 468 89.5
TAR629G1612 Trochodendron aralioides HOM05D005039 ORTHO05D006145 1.1e-233 813.1 469 89.6
MBI04_g12218_MAGBIO Magnolia biondii HOM05D005039 ORTHO05D006145 7.7e-232 807.0 470 88.7
RcHm_v2.0_Chr1g0384591 Rosa chinensis HOM05D005039 ORTHO05D006145 1.3e-231 806.2 469 88.3
MD07G1310900 Malus domestica HOM05D005039 ORTHO05D006145 1.7e-231 805.8 469 88.3
Manes.08G160900 Manihot esculenta HOM05D005039 ORTHO05D006145 1.7e-231 805.8 469 89.1
GSVIVG01024328001 Vitis vinifera HOM05D005039 ORTHO05D006145 3.8e-231 804.7 469 88.5
MELO3C021899.2 Cucumis melo HOM05D005039 ORTHO05D006145 6.5e-231 803.9 469 87.8
TWI79G0887 Tripterygium wilfordii HOM05D005039 ORTHO05D006145 6.5e-231 803.9 469 88.5
FAN10G2688 Fragaria x ananassa HOM05D005039 ORTHO05D006145 1.1e-230 803.1 469 87.6
FvH4_7g34230 Fragaria vesca HOM05D005039 ORTHO05D006145 1.5e-230 802.7 469 87.6
Cfa016075 Carpinus fangiana HOM05D005039 ORTHO05D006145 3.2e-230 801.6 469 88.3
CSS0008859 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 4.2e-230 801.2 469 89.1
Nn1g02122 Nelumbo nucifera HOM05D005039 ORTHO05D006145 5.5e-230 800.8 469 88.5
CsaV3_2G014060 Cucumis sativus L. HOM05D005039 ORTHO05D006145 1.2e-229 799.7 469 88.1
HanXRQChr16g0512151 Helianthus annuus HOM05D005039 ORTHO05D006145 2.1e-229 798.9 469 87.4
FAN01G1789 Fragaria x ananassa HOM05D005039 ORTHO05D006145 3.6e-229 798.1 469 87.0
Potri.013G077700 Populus trichocarpa HOM05D005039 ORTHO05D006145 3.6e-229 798.1 470 87.2
Gohir.A02G125900 Gossypium hirsutum HOM05D005039 ORTHO05D006145 3.0e-228 795.0 469 87.4
Gohir.D03G054700 Gossypium hirsutum HOM05D005039 ORTHO05D006145 3.0e-228 795.0 469 87.4
SGA_v2.0_scaffold188G40301 Striga asiatica HOM05D005039 ORTHO05D006145 3.0e-228 795.0 469 87.4
FAN03G0337 Fragaria x ananassa HOM05D005039 ORTHO05D006145 4.0e-228 794.7 471 87.3
Sed0001134 Sechium edule HOM05D005039 ORTHO05D006145 5.2e-228 794.3 469 86.6
Gorai.003G057600 Gossypium raimondii HOM05D005039 ORTHO05D006145 6.8e-228 793.9 469 87.2
Thecc.05G222600 Theobroma cacao HOM05D005039 ORTHO05D006145 6.8e-228 793.9 469 86.8
Atru.chr12.1876 Acer truncatum HOM05D005039 ORTHO05D006145 2.6e-227 792.0 469 86.6
QL09p020758 Quercus lobata HOM05D005039 ORTHO05D006145 4.4e-227 791.2 468 87.6
Duzib106G2059 Durio zibethinus HOM05D005039 ORTHO05D006145 7.5e-227 790.4 469 86.8
vmacro06372 Vaccinium macrocarpon HOM05D005039 ORTHO05D006145 9.8e-227 790.0 506 82.2
Ciclev10031435m.g Citrus clementina HOM05D005039 ORTHO05D006145 4.8e-226 787.7 469 87.2
PSO782G0889 Papaver somniferum HOM05D005039 ORTHO05D006145 1.1e-225 786.6 470 86.6
Lsat_1_v5_gn_9_47921 Lactuca sativa HOM05D005039 ORTHO05D006145 5.4e-225 784.3 469 86.6
Migut.C00159 Erythranthe guttata HOM05D005039 ORTHO05D006145 1.2e-224 783.1 469 85.7
MSTRG.24939 Avicennia marina HOM05D005039 ORTHO05D006145 2.0e-224 782.3 469 85.5
PSO063G4466 Papaver somniferum HOM05D005039 ORTHO05D006145 2.0e-224 782.3 470 86.2
Hund09811 Selenicereus undatus HOM05D005039 ORTHO05D006145 3.5e-224 781.6 493 83.8
SalBow7G2894 Salvia bowleyana HOM05D005039 ORTHO05D006145 5.9e-224 780.8 469 84.4
Sabra13G0066500 Salix brachista HOM05D005039 ORTHO05D006145 3.8e-223 778.1 506 80.8
Sopen07g023860 Solanum pennellii HOM05D005039 ORTHO05D006145 3.3e-222 775.0 470 85.3
Solyc07g045330.3 Solanum lycopersicum HOM05D005039 ORTHO05D006145 4.2e-222 774.6 470 85.3
Glyma.11G109900 Glycine max HOM05D005039 ORTHO05D006145 1.2e-221 773.1 469 85.3
Glyma.12G014800 Glycine max HOM05D005039 ORTHO05D006145 1.6e-221 772.7 469 85.3
ECA232G0266 Erigeron canadensis HOM05D005039 ORTHO05D006145 2.8e-221 771.9 463 85.5
Lalb_Chr09g0320081 Lupinus albus HOM05D005039 ORTHO05D006145 2.8e-221 771.9 468 84.4
CAN.G437.12 Capsicum annuum HOM05D005039 ORTHO05D006145 3.6e-221 771.5 470 84.9
Ca_26497_v3 Cicer arietinum L. HOM05D005039 ORTHO05D006145 3.6e-221 771.5 469 85.3
Ah.13g072370 Amaranthus hybridus HOM05D005039 ORTHO05D006145 4.7e-221 771.2 469 86.6
THA.LOC104805716 Tarenaya hassleriana HOM05D005039 ORTHO05D006145 1.4e-220 769.6 469 84.2
Lj3g0003232 Lotus japonicus HOM05D005039 ORTHO05D006145 4.0e-220 768.1 468 85.3
Phvul.011G017800 Phaseolus vulgaris HOM05D005039 ORTHO05D006145 9.8e-219 763.5 469 84.6
Os04g0600800 Oryza sativa ssp. japonica HOM05D005039 ORTHO05D006145 1.3e-218 763.1 469 84.4
Medtr5g005440 Medicago truncatula HOM05D005039 ORTHO05D006145 3.7e-218 761.5 468 84.6
Sp7g25580 Schrenkiella parvula HOM05D005039 ORTHO05D006145 3.7e-218 761.5 469 84.2
Carub.0007s1322 Capsella rubella HOM05D005039 ORTHO05D006145 6.3e-218 760.8 469 84.6
AT1G64990 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.8e-217 759.2 469 82.9
Eucgr.K00067 Eucalyptus grandis HOM05D005039 ORTHO05D006145 1.8e-217 759.2 449 88.2
Carub.0002s1015 Capsella rubella HOM05D005039 ORTHO05D006145 2.4e-217 758.8 469 83.4
AL2G19600 Arabidopsis lyrata HOM05D005039 ORTHO05D006145 3.1e-217 758.4 469 82.9
Thhalv10025115m.g Eutrema salsugineum HOM05D005039 ORTHO05D006145 9.2e-217 756.9 469 83.4
AT4G27630 Arabidopsis thaliana HOM05D005039 ORTHO05D006145 1.2e-216 756.5 469 84.0
Aa31LG2G2190 Aethionema arabicum HOM05D005039 ORTHO05D006145 1.6e-216 756.1 469 82.3
CARHR235330 Cardamine hirsuta HOM05D005039 ORTHO05D006145 5.9e-216 754.2 469 83.4
C01p23870 Brassica napus HOM05D005039 ORTHO05D006145 1.0e-215 753.4 469 83.2
Zm00001eb430290 Zea mays HOM05D005039 ORTHO05D006145 1.0e-215 753.4 469 82.9
EL10Ac3g05043 Beta vulgaris HOM05D005039 ORTHO05D006145 2.9e-215 751.9 545 74.9
A01p18920 Brassica napus HOM05D005039 ORTHO05D006145 2.9e-215 751.9 469 82.9
BcaC09g50566 Brassica carinata HOM05D005039 ORTHO05D006145 5.0e-215 751.1 469 82.9
BolC1t02332H Brassica oleracea HOM05D005039 ORTHO05D006145 5.0e-215 751.1 469 82.9
BcaNung01651 Brassica carinata HOM05D005039 ORTHO05D006145 1.1e-214 750.0 469 82.7
AUR62002093 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.1e-214 750.0 469 83.6
CARHR056390 Cardamine hirsuta HOM05D005039 ORTHO05D006145 7.3e-214 747.3 469 82.5
Sp5g19320 Schrenkiella parvula HOM05D005039 ORTHO05D006145 1.2e-213 746.5 469 81.7
C02p21070 Brassica napus HOM05D005039 ORTHO05D006145 1.8e-212 742.7 470 81.9
BraA02t06350Z Brassica rapa HOM05D005039 ORTHO05D006145 1.8e-212 742.7 470 81.9
Duzib128G1855 Durio zibethinus HOM05D005039 ORTHO05D006145 3.0e-212 741.9 469 82.3
A02p12960 Brassica napus HOM05D005039 ORTHO05D006145 9.8e-211 736.9 471 81.5
BraA01t01833Z Brassica rapa HOM05D005039 ORTHO05D006145 6.4e-210 734.2 497 78.1
BolC2t08248H Brassica oleracea HOM05D005039 ORTHO05D006145 8.3e-210 733.8 493 78.1
Peaxi162Scf00802g00029 Petunia axillaris HOM05D005039 ORTHO05D006145 5.4e-209 731.1 470 82.6
PGR142G1194 Punica granatum HOM05D005039 ORTHO05D006145 1.2e-208 729.9 439 85.4
Nitab4.5_0006992g0040 Nicotiana tabacum HOM05D005039 ORTHO05D006145 1.6e-205 719.5 491 78.4
Nitab4.5_0009864g0010 Nicotiana tabacum HOM05D005039 ORTHO05D006145 3.1e-204 715.3 470 80.9
Oeu027894.4 Olea europaea HOM05D005039 ORTHO05D006145 2.9e-202 708.8 492 76.2
Sc13g0011000 Simmondsia chinensis HOM05D005039 ORTHO05D006145 1.0e-199 700.3 418 86.8
Rhsim03G0224300 Rhododendron simsii HOM05D005039 ORTHO05D006145 5.8e-195 684.5 468 79.5
ClCG09G017310 Citrullus lanatus HOM05D005039 ORTHO05D006145 1.7e-194 682.9 397 88.4
Actinidia08765 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.1e-192 676.0 421 85.0
arahy.Tifrunner.gnm1.ann1.GG16T8 Arachis hypogaea HOM05D005039 ORTHO05D006145 7.8e-192 674.1 418 83.7
arahy.Tifrunner.gnm1.ann1.IZT0PT Arachis hypogaea HOM05D005039 ORTHO05D006145 7.8e-192 674.1 418 83.7
Mapoly0094s0006 Marchantia polymorpha HOM05D005039 ORTHO05D006145 2.3e-191 672.5 469 74.2
AUR62028211 Chenopodium quinoa HOM05D005039 ORTHO05D006145 1.1e-188 663.7 423 82.0
unitig_0.g2070 Utricularia gibba HOM05D005039 ORTHO05D006145 4.9e-186 654.8 461 76.1
CSS0032758 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 5.4e-185 651.4 469 75.7
DCAR_020429 Daucus carota HOM05D005039 ORTHO05D006145 5.1e-183 644.8 382 87.4
Cc02_g00100 Coffea canephora HOM05D005039 ORTHO05D006145 4.6e-168 595.1 373 82.6
Prupe.2G329100 Prunus persica HOM05D005039 ORTHO05D006145 3.9e-167 592.0 340 90.9
CiPaw.05G212800 Carya illinoinensis HOM05D005039 ORTHO05D006145 1.1e-166 590.5 350 85.7
HPP92_014410 Vanilla planifolia HOM05D005039 ORTHO05D006145 5.6e-166 588.2 469 69.1
SMO304G0068 Selaginella moellendorffii HOM05D005039 ORTHO05D006145 2.8e-165 585.9 467 64.7
VMungo1127G0275 Vigna mungo HOM05D005039 ORTHO05D006145 1.2e-163 580.5 374 81.8
CBR_g72647 Chara braunii HOM05D005039 ORTHO05D006145 2.5e-161 572.8 470 61.9
Psat7g155320 Pisum sativum HOM05D005039 ORTHO05D006145 2.1e-157 559.7 365 81.4
Lj3A884T54 Lonicera japonica HOM05D005039 ORTHO05D006145 1.5e-155 553.5 324 90.1
BcaB05g25317 Brassica carinata HOM05D005039 ORTHO05D006145 1.3e-138 497.3 320 78.4
Actinidia34332 Actinidia chinensis HOM05D005039 ORTHO05D006145 5.7e-134 481.9 308 84.1
MD01G1239200 Malus domestica HOM05D005039 ORTHO05D006145 1.4e-132 477.2 365 70.1
CDE11G0732 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 4.7e-128 462.2 324 77.8
PGSC0003DMG401017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 5.2e-111 405.6 246 87.0
COL.COLO4_15139 Corchorus olitorius HOM05D005039 ORTHO05D006145 6.6e-90 335.5 312 62.8
Haze_00371 Corylus avellana HOM05D005039 ORTHO05D006145 2.9e-85 320.1 238 74.8
Actinidia24520 Actinidia chinensis HOM05D005039 ORTHO05D006145 2.7e-83 313.5 173 89.6
PGSC0003DMG402017405 Solanum tuberosum HOM05D005039 ORTHO05D006145 8.6e-82 308.5 182 82.4
AagrBONN_evm.TU.Sc2ySwM_369.165 Anthoceros agrestis HOM05D005039 ORTHO05D006145 3.1e-79 300.1 301 55.8
Cre16.g674739 Chlamydomonas reinhardtii HOM05D005039 ORTHO05D006145 2.2e-77 293.9 493 38.5
AagrBONN_evm.TU.Sc2ySwM_117.727 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.1e-72 277.3 210 61.0
AagrBONN_evm.TU.Sc2ySwM_369.410 Anthoceros agrestis HOM05D005039 ORTHO05D006145 2.2e-69 267.3 294 53.4
BcaC03g14670 Brassica carinata HOM05D005039 ORTHO05D006145 6.0e-67 259.2 160 85.6
BcaB05g24073 Brassica carinata HOM05D005039 ORTHO05D006145 5.1e-58 229.6 140 87.1
EL10Ac3g05835 Beta vulgaris HOM05D005039 ORTHO05D006145 8.7e-58 228.8 194 68.6
CARHR057320 Cardamine hirsuta HOM05D005039 ORTHO05D006145 4.8e-56 223.0 407 40.3
Cc02_g00110 Coffea canephora HOM05D005039 ORTHO05D006145 1.6e-51 208.0 119 91.6
MCO06G137 Micromonas commoda HOM05D005039 ORTHO05D006145 2.8e-48 197.2 332 37.7
CDE11G0023 Ceratophyllum demersum HOM05D005039 ORTHO05D006145 5.3e-47 193.0 107 86.0
Cpa.g.sc43.133 Carica papaya HOM05D005039 ORTHO05D006145 1.1e-44 185.3 111 88.3
PRCOL_00000150 Prasinoderma coloniale HOM05D005039 ORTHO05D006145 4.2e-44 183.3 485 30.9
SEGI_13634 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 4.2e-44 183.3 105 83.8
SEGI_29432 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 5.5e-44 183.0 111 87.4
CSS0027952 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 1.1e-36 158.7 91 87.9
CSS0015728 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 6.3e-32 142.9 76 94.7
COL.COLO4_15138 Corchorus olitorius HOM05D005039 ORTHO05D006145 1.2e-27 128.6 72 84.7
Carub.0008s0531 Capsella rubella HOM05D005039 ORTHO05D006145 1.6e-27 128.3 81 82.7
Cpa.g.sc43.132 Carica papaya HOM05D005039 ORTHO05D006145 1.6e-27 128.3 71 85.9
Cpa.g.sc43.136 Carica papaya HOM05D005039 ORTHO05D006145 1.0e-26 125.6 72 84.7
ClCG09G017320 Citrullus lanatus HOM05D005039 ORTHO05D006145 6.7e-26 122.9 72 83.3
CSS0031224 Camellia sinensis var. sinensis HOM05D005039 ORTHO05D006145 3.3e-25 120.6 74 81.1
Oeu028985.2 Olea europaea HOM05D005039 ORTHO05D006145 3.7e-24 117.1 99 65.7
SHI14975 Sapria himalayana HOM05D000023 ORTHO05D000014 2.0e-22 111.3 79 73.4
SEGI_05893 Sequoiadendron giganteum HOM05D005039 ORTHO05D006145 6.1e-19 99.8 57 80.7
Solyc07g045270.2 Solanum lycopersicum HOM05D005039 ORTHO05D006145 7.9e-19 99.4 57 78.9
Carub.0008s0533 Capsella rubella HOM05D005039 ORTHO05D006145 3.7e-16 90.5 52 90.4
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 3.1e-15 87.4 59 79.7
GSVIVG01028619001 Vitis vinifera HOM05D005039 ORTHO05D048867 5.9e-14 83.2 74 60.8
MD01G1239000 Malus domestica HOM05D005039 ORTHO05D006145 2.2e-13 81.3 48 89.6
EL10Ac7g16242 Beta vulgaris HOM05D005039 ORTHO05D006145 2.9e-13 80.9 44 93.2
Potri.019G042201 Populus trichocarpa HOM05D005039 ORTHO05D006145 1.2e-11 75.5 52 78.8
MD01G1239100 Malus domestica HOM05D005039 ORTHO05D006145 4.1e-07 60.5 40 82.5


User provided reference genes

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