Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 0.0e+00 2457.6 1252 100.0
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 0.0e+00 1663.3 1262 67.7
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 0.0e+00 1653.3 1260 69.0
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 0.0e+00 1651.3 1258 68.0
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1636.7 1254 67.0
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 0.0e+00 1627.5 1255 66.4
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 0.0e+00 1622.4 1253 66.2
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1621.3 1262 66.1
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 0.0e+00 1616.3 1250 67.0
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 0.0e+00 1615.9 1257 65.7
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1612.4 1257 66.0
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1610.1 1285 64.7
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 0.0e+00 1609.7 1261 65.6
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 0.0e+00 1607.8 1267 66.4
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 0.0e+00 1600.1 1257 65.6
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 0.0e+00 1597.8 1259 65.8
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 0.0e+00 1594.3 1257 65.2
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1588.9 1263 64.4
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 0.0e+00 1588.5 1263 64.5
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1584.7 1265 65.5
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 0.0e+00 1583.2 1263 64.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 0.0e+00 1582.4 1256 64.8
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1577.8 1259 65.1
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 0.0e+00 1569.3 1258 65.0
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 0.0e+00 1566.6 1259 65.1
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 0.0e+00 1558.9 1266 64.1
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 0.0e+00 1557.7 1258 64.0
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 0.0e+00 1553.1 1256 64.4
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 0.0e+00 1552.7 1272 63.8
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1550.4 1259 63.9
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 0.0e+00 1545.0 1269 63.8
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 0.0e+00 1543.1 1262 63.9
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 0.0e+00 1542.7 1295 62.8
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 0.0e+00 1541.9 1259 63.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 0.0e+00 1539.6 1257 63.9
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1537.3 1256 63.3
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1534.2 1257 63.2
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 0.0e+00 1533.5 1262 63.5
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 0.0e+00 1530.8 1263 63.3
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 0.0e+00 1530.0 1267 63.1
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 0.0e+00 1529.2 1248 63.9
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 0.0e+00 1526.1 1253 64.1
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 0.0e+00 1525.0 1255 64.1
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 0.0e+00 1524.2 1257 62.5
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 0.0e+00 1523.5 1255 62.6
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1522.7 1255 63.2
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 0.0e+00 1521.1 1259 62.4
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1270 62.0
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1520.8 1259 63.2
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1520.4 1328 60.6
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 0.0e+00 1520.0 1252 62.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 0.0e+00 1517.7 1322 61.2
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 0.0e+00 1517.7 1257 62.8
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 0.0e+00 1517.3 1259 62.8
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 0.0e+00 1516.9 1257 62.7
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 0.0e+00 1515.7 1259 62.3
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 0.0e+00 1515.7 1306 61.8
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 0.0e+00 1511.5 1256 62.7
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 0.0e+00 1510.0 1258 62.6
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 0.0e+00 1509.6 1259 62.0
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1508.8 1257 62.9
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 0.0e+00 1506.9 1254 62.7
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 0.0e+00 1499.6 1258 62.2
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 0.0e+00 1498.0 1256 62.6
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1489.6 1251 62.0
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 0.0e+00 1487.6 1249 62.6
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1486.9 1251 62.4
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 0.0e+00 1485.3 1251 62.4
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 0.0e+00 1483.0 1254 62.4
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 0.0e+00 1478.4 1307 60.1
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 0.0e+00 1477.2 1258 61.7
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 0.0e+00 1474.1 1258 61.1
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 0.0e+00 1469.5 1253 61.6
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1253 61.6
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 0.0e+00 1469.1 1252 61.8
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 0.0e+00 1464.5 1181 64.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 0.0e+00 1460.3 1263 61.3
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 0.0e+00 1452.6 1186 64.5
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 0.0e+00 1451.8 1316 59.3
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 0.0e+00 1449.5 1220 62.7
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 0.0e+00 1446.4 1302 60.0
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 0.0e+00 1432.9 1253 60.7
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 0.0e+00 1418.7 1267 60.5
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1414.4 1280 59.8
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 0.0e+00 1409.0 1186 62.1
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 0.0e+00 1407.1 1257 59.9
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 0.0e+00 1403.3 1258 59.1
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 0.0e+00 1401.0 1206 61.1
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 0.0e+00 1393.6 1167 62.8
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 0.0e+00 1379.0 1170 62.8
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 0.0e+00 1339.3 1285 56.3
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 0.0e+00 1325.5 1255 57.0
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 0.0e+00 1323.9 1010 66.9
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 0.0e+00 1318.5 1258 57.3
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 0.0e+00 1277.3 1023 64.5
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 0.0e+00 1174.1 1042 60.6
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 0.0e+00 1167.5 1267 50.7
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 0.0e+00 1152.1 1251 49.7
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 0.0e+00 1096.3 965 60.5
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 4.3e-311 1071.6 891 62.7
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 7.9e-308 1060.8 1255 49.1
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 7.7e-287 991.1 955 56.9
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 1.5e-285 986.9 1286 44.9
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 1.2e-282 977.2 655 75.1
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 5.9e-271 938.3 1205 45.7
Haze_02653 Corylus avellana HOM05D004478 ORTHO05D007440 1.8e-267 926.8 889 56.5
Solyc01g091080.3 Solanum lycopersicum HOM05D004478 ORTHO05D007440 1.8e-264 916.8 799 60.2
Peaxi162Scf00013g02923 Petunia axillaris HOM05D004478 ORTHO05D007440 1.4e-256 890.6 817 58.3
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 4.8e-212 742.7 1346 36.3
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 2.1e-204 717.2 544 67.3
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 1.9e-184 651.0 1402 34.2
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 7.2e-176 622.5 1282 33.6
Os10g0508500 Oryza sativa ssp. japonica HOM05D004478 ORTHO05D007440 1.2e-175 621.7 605 55.7
Carub.0002s1114 Capsella rubella HOM05D004478 ORTHO05D007440 2.0e-173 614.4 623 53.0
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 5.7e-165 586.3 468 64.7
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 1.3e-153 548.5 494 58.9
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 4.1e-139 500.4 644 46.4
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 9.5e-136 489.2 328 75.9
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 2.3e-129 468.0 1153 31.9
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 6.2e-111 406.8 696 40.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 4.9e-108 397.1 276 71.4
SEGI_40120 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 2.4e-102 378.3 338 58.3
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 1.3e-89 335.9 232 71.1
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 1.3e-81 309.3 237 66.7
TWI14G0271 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.1e-80 306.2 268 57.5
TWI14G1129 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 1.1e-80 306.2 268 57.5
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 7.7e-77 293.5 241 61.8
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 5.7e-72 277.3 201 68.2
CARHR186420 Cardamine hirsuta HOM05D004478 ORTHO05D007440 2.6e-40 172.2 160 55.6
GSVIVG01021441001 Vitis vinifera HOM05D001329 ORTHO05D018875 4.4e-40 171.4 193 51.8
TWI14G0849 Tripterygium wilfordii HOM05D004478 ORTHO05D018875 9.2e-38 163.7 175 54.9
CARHR186410 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.6e-37 162.9 104 75.0
GSVIVG01003802001 Vitis vinifera HOM05D004478 ORTHO05D018875 7.7e-37 160.6 155 57.4
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 2.8e-34 152.1 1204 21.8
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 2.2e-31 142.5 119 58.0
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 1.5e-27 129.8 99 65.7
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 5.6e-27 127.9 113 61.1
SHI25190 Sapria himalayana HOM05D004478 ORTHO05D037525 2.4e-22 112.5 131 45.0
CAN.G433.8 Capsicum annuum HOM05D004478 ORTHO05D018875 3.2e-22 112.1 221 38.5
SHI07794 Sapria himalayana HOM05D004478 ORTHO05D037525 5.6e-19 101.3 159 39.0
SHI33403 Sapria himalayana HOM05D004478 ORTHO05D037525 1.1e-17 97.1 124 45.2
CARHR186540 Cardamine hirsuta HOM05D004478 ORTHO05D018875 5.8e-16 91.3 154 37.0
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 9.8e-16 90.5 93 51.6
Peaxi162Scf00003g02046 Petunia axillaris HOM05D004478 ORTHO05D018875 3.9e-12 78.6 105 41.0
Peaxi162Scf00003g02040 Petunia axillaris HOM05D004478 ORTHO05D018875 1.9e-11 76.3 105 39.0
SHI43043 Sapria himalayana HOM05D000957 ORTHO05D000754 5.6e-11 74.7 105 39.0
Psat5g194480 Pisum sativum HOM05D016864 ORTHO05D321521 7.3e-11 74.3 91 48.4
GSVIVG01029808001 Vitis vinifera HOM05D004478 ORTHO05D018875 3.6e-10 72.0 63 57.1
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 1.2e-08 67.0 49 57.1
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 4.4e-08 65.1 269 25.7
SGA_v2.0_scaffold295G47511 Striga asiatica HOM05D004964 ORTHO05D005918 1.1e-06 60.5 153 37.3
AagrBONN_evm.TU.Sc2ySwM_228.35 Anthoceros agrestis HOM05D004478 ORTHO05D072883 2.4e-06 59.3 68 42.6
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 5.4e-06 58.2 119 36.1


User provided reference genes

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