Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.0e-124 449.1 230 100.0
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.9e-34 150.2 203 44.3
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.3e-34 149.4 164 50.0
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.3e-34 148.3 183 45.4
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.2e-33 147.5 248 40.3
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 3.6e-33 146.0 229 37.6
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.4e-32 144.1 202 43.6
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.8e-32 143.7 175 42.3
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 8.9e-32 141.4 222 38.3
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 1.5e-31 140.6 175 43.4
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.0e-31 140.2 231 39.4
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.4e-31 139.0 230 35.7
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.3e-30 137.5 230 37.0
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 6.4e-30 135.2 235 39.1
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.4e-30 135.2 230 37.8
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.4e-29 134.0 244 38.9
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 1.4e-29 134.0 166 42.8
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 1.9e-29 133.7 204 40.2
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.9e-29 133.7 208 41.8
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 3.2e-29 132.9 216 41.2
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 4.2e-29 132.5 171 43.3
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 5.4e-29 132.1 201 42.3
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 7.1e-29 131.7 128 47.7
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.2e-28 131.0 186 40.9
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.6e-28 130.6 154 44.2
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 3.5e-28 129.4 186 39.2
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 4.6e-28 129.0 195 38.5
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 7.8e-28 128.3 235 34.9
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 1.0e-27 127.9 206 37.4
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.0e-27 127.9 231 38.5
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 1.3e-27 127.5 230 39.6
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 1.7e-27 127.1 193 40.9
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 1.7e-27 127.1 199 40.2
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.7e-27 127.1 197 38.1
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.7e-27 127.1 209 38.3
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.0e-27 126.3 231 37.2
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 6.6e-27 125.2 229 37.1
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 6.6e-27 125.2 129 45.7
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 6.6e-27 125.2 177 38.4
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 8.7e-27 124.8 155 43.2
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 2.5e-26 123.2 169 39.1
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.5e-26 123.2 252 35.7
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 4.3e-26 122.5 161 41.6
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 7.3e-26 121.7 225 37.8
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 7.3e-26 121.7 189 37.6
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 9.6e-26 121.3 237 33.3
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 1.3e-25 120.9 239 31.4
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 1.3e-25 120.9 189 38.6
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 1.6e-25 120.6 226 38.1
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 2.1e-25 120.2 183 39.9
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.1e-25 120.2 240 35.0
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.8e-25 119.8 168 38.7
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 2.8e-25 119.8 200 39.5
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 4.8e-25 119.0 134 42.5
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 4.8e-25 119.0 148 41.2
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 4.8e-25 119.0 175 38.9
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 6.2e-25 118.6 169 39.1
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 6.2e-25 118.6 246 35.0
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 8.1e-25 118.2 170 40.0
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 8.1e-25 118.2 247 34.4
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.1e-24 117.9 152 42.8
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.1e-24 117.9 184 38.0
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 1.4e-24 117.5 190 39.5
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.8e-24 117.1 213 35.2
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 1.8e-24 117.1 176 38.1
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 2.4e-24 116.7 205 34.6
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.1e-24 116.3 171 39.8
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 4.0e-24 115.9 234 35.0
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 5.3e-24 115.5 147 39.5
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 6.9e-24 115.2 175 38.9
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 9.0e-24 114.8 132 43.9
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 9.0e-24 114.8 175 38.3
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.2e-23 114.4 175 38.9
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-23 114.4 175 38.9
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-23 114.0 175 38.9
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 3.4e-23 112.8 173 40.5
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 3.4e-23 112.8 132 43.2
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 3.4e-23 112.8 151 38.4
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.7e-22 110.5 174 36.2
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.7e-22 110.5 174 36.2
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 2.2e-22 110.2 170 37.1
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.9e-22 109.8 152 39.5
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.9e-22 109.0 164 36.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 4.9e-22 109.0 161 37.3
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 8.4e-22 108.2 141 40.4
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.1e-21 107.8 142 38.7
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 1.1e-21 107.8 143 41.3
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.1e-21 107.8 171 38.0
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.4e-21 107.5 168 38.1
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.4e-21 107.5 153 38.6
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.9e-21 107.1 190 33.7
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.9e-21 107.1 212 34.4
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.9e-21 107.1 172 33.7
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 5.4e-21 105.5 164 37.2
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 7.1e-21 105.1 190 34.2
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.1e-21 105.1 164 37.2
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 7.1e-21 105.1 235 32.3
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 1.6e-20 104.0 133 39.1
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.5e-20 102.8 186 34.9
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 3.5e-20 102.8 149 39.6
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 4.6e-20 102.4 148 37.8
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 4.6e-20 102.4 148 37.8
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 4.6e-20 102.4 156 39.7
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 7.8e-20 101.7 136 39.0
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 1.7e-19 100.5 136 37.5
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.7e-19 100.5 155 36.1
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.7e-19 100.5 165 36.4
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 2.3e-19 100.1 153 37.3
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 5.1e-19 99.0 173 35.8
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 5.1e-19 99.0 152 36.8
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 8.7e-19 98.2 155 37.4
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.5e-18 97.4 149 36.2
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 1.9e-18 97.1 160 34.4
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.3e-18 96.3 216 34.3
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.3e-18 96.3 130 40.8
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-17 94.4 137 38.7
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.3e-17 94.4 140 35.0
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.1e-17 93.6 169 34.3
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 4.8e-17 92.4 148 35.1
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 6.2e-17 92.0 126 38.9
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 8.1e-17 91.7 161 34.2
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 1.4e-16 90.9 149 34.9
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 1.4e-16 90.9 149 34.9
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.4e-16 90.9 123 38.2
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 9.0e-16 88.2 149 34.2
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 1.2e-15 87.8 149 33.6
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-15 87.0 149 33.6
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.0e-15 87.0 116 38.8
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 2.0e-15 87.0 129 34.9
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 4.5e-15 85.9 145 33.8
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 4.5e-15 85.9 131 35.1
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 5.8e-15 85.5 92 42.4
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 6.4e-14 82.0 115 35.7
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 6.4e-14 82.0 139 28.8
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 8.4e-14 81.6 130 34.6
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 8.4e-14 81.6 212 34.9
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 2.4e-13 80.1 130 33.8
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 3.2e-13 79.7 165 31.5
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 4.2e-13 79.3 151 33.8
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 7.1e-13 78.6 130 33.1
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 7.1e-13 78.6 130 33.1
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.2e-12 77.8 131 32.1
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.7e-12 76.6 129 32.6
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 3.5e-12 76.3 115 40.0
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 6.7e-11 72.0 134 34.3
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 6.7e-11 72.0 134 34.3
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 6.7e-11 72.0 134 34.3
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 6.7e-11 72.0 87 41.4
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-10 71.2 148 31.1
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-10 70.9 134 33.6
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.5e-10 70.9 134 33.6
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.5e-10 70.9 104 39.4
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.3e-10 69.7 99 32.3
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 4.3e-10 69.3 118 32.2
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.1e-08 64.7 70 44.3
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-08 64.7 90 36.7
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.4e-08 64.3 146 27.4


User provided reference genes

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