Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G074 Amborella trichopoda HOM05D004688 ORTHO05D005490 1.4e-190 669.5 337 100.0
CDE11G1120 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 2.2e-71 273.5 350 49.4
Cfa016079 Carpinus fangiana HOM05D004688 ORTHO05D005490 1.1e-70 271.2 341 49.3
Haze_00366 Corylus avellana HOM05D004688 ORTHO05D005490 1.9e-70 270.4 340 49.4
QL09p020531 Quercus lobata HOM05D004688 ORTHO05D005490 7.1e-70 268.5 341 46.9
CDE02G1754 Ceratophyllum demersum HOM05D004688 ORTHO05D005490 1.6e-69 267.3 350 48.0
CiPaw.05G212300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.7e-69 266.5 340 48.8
TAR629G2324 Trochodendron aralioides HOM05D004688 ORTHO05D005490 4.6e-69 265.8 339 48.4
COL.COLO4_15125 Corchorus olitorius HOM05D004688 ORTHO05D005490 7.9e-69 265.0 339 48.4
Manes.08G160300 Manihot esculenta HOM05D004688 ORTHO05D005490 1.0e-68 264.6 339 47.8
MBI04_g30768_MAGBIO Magnolia biondii HOM05D004688 ORTHO05D005490 3.9e-68 262.7 343 48.1
Gohir.A13G158100 Gossypium hirsutum HOM05D004688 ORTHO05D005490 6.6e-68 261.9 344 47.7
TAR636G2823 Trochodendron aralioides HOM05D004688 ORTHO05D005490 7.4e-67 258.5 339 49.9
Aqoxy1G03166 Aquilegia oxysepala HOM05D004688 ORTHO05D005490 9.6e-67 258.1 339 48.1
Atru.chr12.1856 Acer truncatum HOM05D004688 ORTHO05D005490 1.6e-66 257.3 343 47.2
Ciclev10032005m.g Citrus clementina HOM05D004688 ORTHO05D005490 1.1e-65 254.6 341 45.7
Thecc.05G223200 Theobroma cacao HOM05D004688 ORTHO05D005490 1.8e-65 253.8 340 47.4
Cc04_g10300 Coffea canephora HOM05D004688 ORTHO05D005490 3.1e-65 253.1 343 47.8
Manes.09G130000 Manihot esculenta HOM05D004688 ORTHO05D005490 3.1e-65 253.1 334 45.8
Potri.019G042700 Populus trichocarpa HOM05D004688 ORTHO05D005490 5.3e-65 252.3 341 47.5
vmacro12865 Vaccinium macrocarpon HOM05D004688 ORTHO05D005490 5.3e-65 252.3 339 47.2
Gorai.003G058400 Gossypium raimondii HOM05D004688 ORTHO05D005490 1.2e-64 251.1 339 48.1
Eucgr.E02431 Eucalyptus grandis HOM05D004688 ORTHO05D005490 4.5e-64 249.2 339 46.3
Gohir.A02G114600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 5.8e-64 248.8 339 47.8
Duzib128G0049 Durio zibethinus HOM05D004688 ORTHO05D005490 9.9e-64 248.1 351 46.4
Gohir.D03G055600 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.9e-64 248.1 339 47.5
Gohir.D13G162400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 9.9e-64 248.1 344 45.3
Gorai.013G184500 Gossypium raimondii HOM05D004688 ORTHO05D005490 9.9e-64 248.1 343 45.8
GSVIVG01024321001 Vitis vinifera HOM05D004688 ORTHO05D005490 9.9e-64 248.1 339 46.3
Hma1.2p1_0528F.1_g173050 Hydrangea macrophylla HOM05D004688 ORTHO05D005490 3.8e-63 246.1 339 45.7
RhsimUnG0132900 Rhododendron simsii HOM05D004688 ORTHO05D005490 3.8e-63 246.1 339 46.0
FAN01G2619 Fragaria x ananassa HOM05D004688 ORTHO05D005490 4.9e-63 245.7 342 46.8
Nn3g21937 Nelumbo nucifera HOM05D004688 ORTHO05D005490 6.4e-63 245.4 348 46.3
CiPaw.06G036300 Carya illinoinensis HOM05D004688 ORTHO05D005490 2.4e-62 243.4 338 46.7
FAN03G0573 Fragaria x ananassa HOM05D004688 ORTHO05D005490 3.2e-62 243.0 342 46.8
FvH4_7g34310 Fragaria vesca HOM05D004688 ORTHO05D005490 4.2e-62 242.7 342 46.5
Nn4g25357 Nelumbo nucifera HOM05D004688 ORTHO05D005490 4.2e-62 242.7 341 48.1
arahy.Tifrunner.gnm1.ann1.N6YK28 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.2e-61 241.1 348 45.1
Nn1g09153 Nelumbo nucifera HOM05D004688 ORTHO05D005490 1.2e-61 241.1 347 46.7
arahy.Tifrunner.gnm1.ann1.8TRX11 Arachis hypogaea HOM05D004688 ORTHO05D005490 1.6e-61 240.7 339 45.7
PSO063G1904 Papaver somniferum HOM05D004688 ORTHO05D005490 2.1e-61 240.4 341 46.0
Prupe.2G329400 Prunus persica HOM05D004688 ORTHO05D005490 2.7e-61 240.0 343 46.1
PSO782G0681 Papaver somniferum HOM05D004688 ORTHO05D005490 3.5e-61 239.6 341 46.0
RcHm_v2.0_Chr1g0384701 Rosa chinensis HOM05D004688 ORTHO05D005490 3.5e-61 239.6 342 44.7
Dinv24334 Davidia involucrata HOM05D004688 ORTHO05D005490 1.3e-60 237.7 340 46.5
Glyma.12G014100 Glycine max HOM05D004688 ORTHO05D005490 1.8e-60 237.3 341 44.9
Actinidia20087 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.0e-60 236.5 339 46.6
Duzib177G0832 Durio zibethinus HOM05D004688 ORTHO05D005490 3.0e-60 236.5 344 45.9
Potri.013G076900 Populus trichocarpa HOM05D004688 ORTHO05D005490 3.0e-60 236.5 340 45.6
CANSAT21G2449 Cannabis sativa HOM05D004688 ORTHO05D005490 3.9e-60 236.1 345 47.2
Gohir.A08G221644 Gossypium hirsutum HOM05D004688 ORTHO05D005490 2.5e-59 233.4 343 45.2
MELO3C014341.2 Cucumis melo HOM05D004688 ORTHO05D005490 4.3e-59 232.6 335 44.2
TWI12G0369 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.3e-59 232.6 339 44.5
TWI18G0476 Tripterygium wilfordii HOM05D004688 ORTHO05D005490 4.3e-59 232.6 339 45.1
SalBow1G7515 Salvia bowleyana HOM05D004688 ORTHO05D005490 5.6e-59 232.3 342 44.4
DCAR_030965 Daucus carota HOM05D004688 ORTHO05D005490 9.6e-59 231.5 342 43.9
Glyma.09G222900 Glycine max HOM05D004688 ORTHO05D005490 9.6e-59 231.5 342 44.4
Sed0013330 Sechium edule HOM05D004688 ORTHO05D005490 9.6e-59 231.5 344 43.9
VMungo1127G1418 Vigna mungo HOM05D004688 ORTHO05D005490 1.6e-58 230.7 346 43.6
Sed0002645 Sechium edule HOM05D004688 ORTHO05D005490 2.8e-58 229.9 344 44.5
SGA_v2.0_scaffold163G38052 Striga asiatica HOM05D004688 ORTHO05D005490 2.8e-58 229.9 342 45.3
Carub.0007s1323 Capsella rubella HOM05D004688 ORTHO05D005490 4.8e-58 229.2 340 44.4
PGR142G2085 Punica granatum HOM05D004688 ORTHO05D005490 4.8e-58 229.2 333 44.7
THA.LOC104823796 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 4.8e-58 229.2 341 44.9
MSTRG.14034 Avicennia marina HOM05D004688 ORTHO05D005490 6.2e-58 228.8 334 44.0
Oeu047689.1 Olea europaea HOM05D004688 ORTHO05D005490 6.2e-58 228.8 342 45.3
Gohir.D08G240400 Gossypium hirsutum HOM05D004688 ORTHO05D005490 1.1e-57 228.0 343 44.6
ECA236G0885 Erigeron canadensis HOM05D004688 ORTHO05D005490 1.4e-57 227.6 340 46.5
Migut.E01543 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.8e-57 227.3 335 45.4
Ca_19600_v3 Cicer arietinum L. HOM05D004688 ORTHO05D005490 2.4e-57 226.9 344 44.8
Os02g0582200 Oryza sativa ssp. japonica HOM05D004688 ORTHO05D005490 2.4e-57 226.9 345 44.9
Sabra13G0065900 Salix brachista HOM05D004688 ORTHO05D005490 2.4e-57 226.9 404 39.9
CsaV3_6G036850 Cucumis sativus L. HOM05D004688 ORTHO05D005490 4.0e-57 226.1 337 43.6
Oeu037809.1 Olea europaea HOM05D004688 ORTHO05D005490 4.0e-57 226.1 339 43.4
Gorai.004G255700 Gossypium raimondii HOM05D004688 ORTHO05D005490 6.9e-57 225.3 343 44.3
Peaxi162Scf00012g01425 Petunia axillaris HOM05D004688 ORTHO05D005490 1.2e-56 224.6 341 44.6
Zm00001eb245400 Zea mays HOM05D004688 ORTHO05D005490 2.0e-56 223.8 344 43.0
Thhalv10025690m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 2.6e-56 223.4 335 44.2
Lj3g0005411 Lotus japonicus HOM05D004688 ORTHO05D005490 2.6e-56 223.4 338 43.8
ClCG09G013160 Citrullus lanatus HOM05D004688 ORTHO05D005490 4.5e-56 222.6 341 42.5
MSTRG.1666 Avicennia marina HOM05D004688 ORTHO05D005490 7.6e-56 221.9 344 43.9
MD07G1032800 Malus domestica HOM05D004688 ORTHO05D005490 7.6e-56 221.9 343 44.6
THA.LOC104805719 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.3e-55 221.1 341 43.1
Lj2A605T63 Lonicera japonica HOM05D004688 ORTHO05D005490 2.9e-55 219.9 385 40.0
CARHR235320 Cardamine hirsuta HOM05D004688 ORTHO05D005490 3.8e-55 219.5 340 43.5
HanXRQChr04g0116531 Helianthus annuus HOM05D004688 ORTHO05D005490 4.9e-55 219.2 339 45.4
EL10Ac6g14347 Beta vulgaris HOM05D004688 ORTHO05D005490 8.4e-55 218.4 339 45.1
Lalb_Chr19g0140091 Lupinus albus HOM05D004688 ORTHO05D005490 8.4e-55 218.4 346 42.8
AT4G27620 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 1.9e-54 217.2 338 42.9
HanXRQChr15g0482031 Helianthus annuus HOM05D004688 ORTHO05D005490 3.2e-54 216.5 338 43.5
AUR62002842 Chenopodium quinoa HOM05D004688 ORTHO05D005490 9.3e-54 214.9 344 41.9
Sabra19G0053300 Salix brachista HOM05D004688 ORTHO05D005490 9.3e-54 214.9 405 39.0
TPR.G9830 Trifolium pratense HOM05D004688 ORTHO05D005490 1.2e-53 214.5 343 44.0
Zm00001eb183340 Zea mays HOM05D004688 ORTHO05D005490 1.2e-53 214.5 343 41.4
Aa31LG5G12060 Aethionema arabicum HOM05D004688 ORTHO05D003121 1.6e-53 214.2 342 43.9
Carub.0007s1324 Capsella rubella HOM05D004688 ORTHO05D005490 2.1e-53 213.8 344 44.5
PGSC0003DMG400028677 Solanum tuberosum HOM05D004688 ORTHO05D005490 2.7e-53 213.4 335 43.9
Sp7g25570 Schrenkiella parvula HOM05D004688 ORTHO05D005490 4.6e-53 212.6 344 43.9
CSS0020442 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.0e-53 212.2 348 43.4
Sc07g0001340 Simmondsia chinensis HOM05D004688 ORTHO05D005490 6.0e-53 212.2 334 42.8
Solyc11g005810.2 Solanum lycopersicum HOM05D004688 ORTHO05D005490 6.0e-53 212.2 336 43.5
Sopen11g001770 Solanum pennellii HOM05D004688 ORTHO05D005490 6.0e-53 212.2 336 43.5
THA.LOC104821693 Tarenaya hassleriana HOM05D004688 ORTHO05D005490 1.8e-52 210.7 342 42.7
Psat0s643g0040 Pisum sativum HOM05D004688 ORTHO05D005490 3.0e-52 209.9 345 42.0
AT4G27610 Arabidopsis thaliana HOM05D004688 ORTHO05D005490 3.9e-52 209.5 340 43.8
Lalb_Chr01g0000741 Lupinus albus HOM05D004688 ORTHO05D005490 3.9e-52 209.5 345 43.5
Sp7g25560 Schrenkiella parvula HOM05D004688 ORTHO05D005490 5.1e-52 209.1 342 43.9
Medtr0004s0230 Medicago truncatula HOM05D004688 ORTHO05D005490 8.7e-52 208.4 341 43.1
MD01G1239500 Malus domestica HOM05D004688 ORTHO05D005490 3.3e-51 206.5 342 43.6
A01p18910 Brassica napus HOM05D004688 ORTHO05D005490 5.7e-51 205.7 335 43.9
BcaC09g50567 Brassica carinata HOM05D004688 ORTHO05D005490 7.4e-51 205.3 337 42.7
BolC1t02331H Brassica oleracea HOM05D004688 ORTHO05D005490 7.4e-51 205.3 337 42.7
Thhalv10025651m.g Eutrema salsugineum HOM05D004688 ORTHO05D005490 1.6e-50 204.1 341 42.5
AL7G25110 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 2.8e-50 203.4 341 42.8
BraA01t01832Z Brassica rapa HOM05D004688 ORTHO05D005490 3.7e-50 203.0 333 43.2
Oeu044132.1 Olea europaea HOM05D004688 ORTHO05D005490 5.3e-49 199.1 332 40.1
BcaNung01654 Brassica carinata HOM05D004688 ORTHO05D005490 6.9e-49 198.7 348 42.2
Dinv03730 Davidia involucrata HOM05D004688 ORTHO05D005490 6.9e-49 198.7 311 44.7
Ah.02g127670 Amaranthus hybridus HOM05D004688 ORTHO05D005490 1.5e-48 197.6 335 41.5
CARHR235310 Cardamine hirsuta HOM05D004688 ORTHO05D005490 2.0e-48 197.2 343 41.7
Lsat_1_v5_gn_7_27441 Lactuca sativa HOM05D005861 ORTHO05D007151 3.4e-48 196.4 299 45.8
Phvul.011G017000 Phaseolus vulgaris HOM05D004688 ORTHO05D005490 5.9e-48 195.7 294 44.9
BcaNung01652 Brassica carinata HOM05D004688 ORTHO05D005490 1.3e-47 194.5 337 41.8
FAN10G2489 Fragaria x ananassa HOM05D004688 ORTHO05D005490 1.7e-47 194.1 379 39.8
Nitab4.5_0000877g0060 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.7e-47 194.1 347 40.3
A03p57380 Brassica napus HOM05D004688 ORTHO05D005490 2.2e-47 193.7 340 40.3
BraA03t14804Z Brassica rapa HOM05D004688 ORTHO05D005490 2.2e-47 193.7 340 40.3
BcaC06g32678 Brassica carinata HOM05D004688 ORTHO05D005490 2.9e-47 193.4 344 40.7
Lalb_Chr03g0024311 Lupinus albus HOM05D004688 ORTHO05D005490 6.5e-47 192.2 338 40.8
AUR62037307 Chenopodium quinoa HOM05D004688 ORTHO05D005490 8.4e-47 191.8 339 40.1
C01p23860 Brassica napus HOM05D004688 ORTHO05D005490 4.2e-46 189.5 336 41.7
Ah.03g138260 Amaranthus hybridus HOM05D004688 ORTHO05D005490 7.2e-46 188.7 335 40.0
C07p55600 Brassica napus HOM05D004688 ORTHO05D005490 3.5e-45 186.4 343 41.4
BolC7t46040H Brassica oleracea HOM05D004688 ORTHO05D005490 6.1e-45 185.7 344 41.0
BolC1t02329H Brassica oleracea HOM05D004688 ORTHO05D005490 1.3e-44 184.5 342 40.1
BcaC09g50575 Brassica carinata HOM05D004688 ORTHO05D005490 1.8e-44 184.1 342 40.6
C01p23780 Brassica napus HOM05D004688 ORTHO05D005490 1.8e-44 184.1 341 40.8
BraA01t01828Z Brassica rapa HOM05D004688 ORTHO05D005490 2.3e-44 183.7 342 40.9
A01p18850 Brassica napus HOM05D004688 ORTHO05D005490 3.9e-44 183.0 342 40.4
Duzib106G1350 Durio zibethinus HOM05D004688 ORTHO05D005490 9.7e-43 178.3 267 43.1
Migut.A00176 Erythranthe guttata HOM05D004688 ORTHO05D005490 1.4e-41 174.5 329 37.4
Actinidia06638 Actinidia chinensis HOM05D004688 ORTHO05D005490 3.1e-41 173.3 203 50.2
AL7G25100 Arabidopsis lyrata HOM05D004688 ORTHO05D005490 9.4e-38 161.8 213 47.9
CSS0035319 Camellia sinensis var. sinensis HOM05D004688 ORTHO05D005490 6.1e-37 159.1 241 44.4
SEGI_37617 Sequoiadendron giganteum HOM05D004688 ORTHO05D005490 2.5e-35 153.7 389 32.9
unitig_578.g16583 Utricularia gibba HOM05D004688 ORTHO05D005490 3.1e-33 146.7 238 43.3
HPP92_004940 Vanilla planifolia HOM05D004688 ORTHO05D005490 4.0e-20 103.2 164 40.2
BcaC06g32679 Brassica carinata HOM05D006163 ORTHO05D007625 8.8e-20 102.1 334 31.1
Nitab4.5_0000805g0040 Nicotiana tabacum HOM05D004688 ORTHO05D005490 1.1e-19 101.7 334 30.8
HPP92_022761 Vanilla planifolia HOM05D004688 ORTHO05D005490 9.7e-19 98.6 222 36.0
unitig_8.g5064 Utricularia gibba HOM05D004688 ORTHO05D005490 4.2e-14 83.2 163 37.4
SMO367G0918 Selaginella moellendorffii HOM05D004688 ORTHO05D005490 4.8e-10 69.7 244 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2972 Anthoceros agrestis HOM05D034434 ORTHO05D019609 1.6e-08 64.7 254 26.8
Pp3c24_15840 Physcomitrium patens HOM05D017133 ORTHO05D005490 2.0e-08 64.3 246 26.8
Pp3c18_2430 Physcomitrium patens HOM05D017133 ORTHO05D019609 5.9e-08 62.8 361 25.2
AagrBONN_evm.TU.Sc2ySwM_228.4062 Anthoceros agrestis HOM05D034434 ORTHO05D002774 1.3e-07 61.6 84 39.3
HPP92_004939 Vanilla planifolia HOM05D004688 ORTHO05D005490 8.5e-07 58.9 145 35.2


User provided reference genes

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