Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G072 Amborella trichopoda HOM05D001237 ORTHO05D009110 1.1e-178 629.8 313 100.0
Nn3g19221 Nelumbo nucifera HOM05D001237 ORTHO05D009110 3.0e-123 445.7 302 72.8
TAR629G2165 Trochodendron aralioides HOM05D001237 ORTHO05D009110 1.5e-122 443.4 284 75.4
GSVIVG01022633001 Vitis vinifera HOM05D001237 ORTHO05D009110 5.7e-122 441.4 263 81.0
Atru.chr6.1547 Acer truncatum HOM05D001237 ORTHO05D009110 3.7e-121 438.7 284 76.1
Psat2g141080 Pisum sativum HOM05D001237 ORTHO05D009110 2.0e-119 433.0 262 78.2
Cpa.g.sc24.66 Carica papaya HOM05D001237 ORTHO05D009110 3.4e-119 432.2 267 77.9
Lalb_Chr05g0215521 Lupinus albus HOM05D001237 ORTHO05D009110 4.5e-119 431.8 313 67.7
TPR.G29137 Trifolium pratense HOM05D001237 ORTHO05D009110 2.9e-118 429.1 325 65.8
Manes.17G008800 Manihot esculenta HOM05D001237 ORTHO05D009110 3.8e-118 428.7 270 77.8
Oeu038592.1 Olea europaea HOM05D001237 ORTHO05D009110 8.5e-118 427.6 263 78.7
Phvul.002G132200 Phaseolus vulgaris HOM05D001237 ORTHO05D009110 8.5e-118 427.6 270 77.0
CiPaw.12G070700 Carya illinoinensis HOM05D001237 ORTHO05D009110 4.2e-117 425.2 286 73.8
Potri.003G100300 Populus trichocarpa HOM05D001237 ORTHO05D009110 5.5e-117 424.9 266 77.4
Actinidia18147 Actinidia chinensis HOM05D001237 ORTHO05D009110 7.2e-117 424.5 279 74.9
PGR042G3955 Punica granatum HOM05D001237 ORTHO05D009110 1.2e-116 423.7 300 70.0
Medtr5g027220 Medicago truncatula HOM05D001237 ORTHO05D009110 1.6e-116 423.3 261 77.8
PSO782G3536 Papaver somniferum HOM05D001237 ORTHO05D009110 2.1e-116 422.9 261 76.6
Aqoxy3G02614 Aquilegia oxysepala HOM05D001237 ORTHO05D009110 2.7e-116 422.5 270 75.9
Zm00001eb208900 Zea mays HOM05D001237 ORTHO05D009110 2.7e-116 422.5 273 75.8
DCAR_024946 Daucus carota HOM05D001577 ORTHO05D009110 3.6e-116 422.2 264 76.5
CAN.G773.2 Capsicum annuum HOM05D001237 ORTHO05D009110 4.7e-116 421.8 263 76.4
Nitab4.5_0002735g0030 Nicotiana tabacum HOM05D001237 ORTHO05D009110 4.7e-116 421.8 265 76.6
Lj8A324T105 Lonicera japonica HOM05D001237 ORTHO05D009110 6.1e-116 421.4 314 67.2
Prupe.5G022700 Prunus persica HOM05D001237 ORTHO05D009110 1.0e-115 420.6 285 71.6
Thecc.03G315000 Theobroma cacao HOM05D001237 ORTHO05D009110 1.0e-115 420.6 262 77.1
CANSAT25G2402 Cannabis sativa HOM05D001237 ORTHO05D009110 1.8e-115 419.9 267 77.2
VMungo1215G0366 Vigna mungo HOM05D001237 ORTHO05D000217 1.8e-115 419.9 263 76.4
Nitab4.5_0001033g0010 Nicotiana tabacum HOM05D001237 ORTHO05D009110 2.3e-115 419.5 265 75.8
Lj2g0015654 Lotus japonicus HOM05D001237 ORTHO05D009110 3.9e-115 418.7 307 68.1
RcHm_v2.0_Chr7g0213081 Rosa chinensis HOM05D001237 ORTHO05D009110 8.8e-115 417.5 267 76.0
Sopen08g024630 Solanum pennellii HOM05D001237 ORTHO05D009110 8.8e-115 417.5 263 76.0
Eucgr.E01249 Eucalyptus grandis HOM05D001237 ORTHO05D009110 1.5e-114 416.8 260 76.2
Solyc08g075990.3 Solanum lycopersicum HOM05D001237 ORTHO05D009110 1.5e-114 416.8 269 74.7
vmacro22924 Vaccinium macrocarpon HOM05D001237 ORTHO05D009110 1.5e-114 416.8 284 71.8
Migut.E01337 Erythranthe guttata HOM05D001237 ORTHO05D009110 2.6e-114 416.0 267 74.9
Gohir.A08G151200 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.6e-114 416.0 270 75.2
Rhsim07G0137000 Rhododendron simsii HOM05D001237 ORTHO05D009110 2.6e-114 416.0 288 71.5
Sed0014021 Sechium edule HOM05D001237 ORTHO05D009110 2.6e-114 416.0 267 75.7
Cfa012569 Carpinus fangiana HOM05D001237 ORTHO05D009110 3.3e-114 415.6 263 75.7
CsaV3_3G001140 Cucumis sativus L. HOM05D001237 ORTHO05D009110 3.3e-114 415.6 265 76.2
FAN18G3541 Fragaria x ananassa HOM05D001237 ORTHO05D009110 3.3e-114 415.6 267 75.3
Sc07g0008510 Simmondsia chinensis HOM05D001237 ORTHO05D009110 3.3e-114 415.6 260 76.5
Gorai.004G179700 Gossypium raimondii HOM05D001237 ORTHO05D009110 5.7e-114 414.8 270 75.2
FAN18G4185 Fragaria x ananassa HOM05D001237 ORTHO05D009110 9.7e-114 414.1 267 74.9
Duzib084G0831 Durio zibethinus HOM05D001237 ORTHO05D009110 1.3e-113 413.7 264 75.8
FvH4_5g23760 Fragaria vesca HOM05D001237 ORTHO05D009110 1.3e-113 413.7 267 74.9
THA.LOC104812764 Tarenaya hassleriana HOM05D001237 ORTHO05D009110 2.2e-113 412.9 263 76.4
COL.COLO4_27340 Corchorus olitorius HOM05D001237 ORTHO05D009110 2.8e-113 412.5 312 67.6
AT5G48790 Arabidopsis thaliana HOM05D001237 ORTHO05D009110 3.7e-113 412.1 267 75.3
MD00G1000600 Malus domestica HOM05D001237 ORTHO05D009110 3.7e-113 412.1 257 77.4
BraA06t26806Z Brassica rapa HOM05D001237 ORTHO05D009110 6.3e-113 411.4 263 75.7
FAN08G1241 Fragaria x ananassa HOM05D001237 ORTHO05D009110 6.3e-113 411.4 267 74.5
Hma1.2p1_0979F.1_g243590 Hydrangea macrophylla HOM05D001237 ORTHO05D009110 6.3e-113 411.4 277 73.6
Cc00_g24190 Coffea canephora HOM05D001237 ORTHO05D009110 1.1e-112 410.6 257 75.9
EL10Ac5g11946 Beta vulgaris HOM05D001237 ORTHO05D009110 3.1e-112 409.1 254 76.0
A06p38920 Brassica napus HOM05D001237 ORTHO05D009110 4.1e-112 408.7 263 75.3
MELO3C013804.2 Cucumis melo HOM05D001237 ORTHO05D009110 4.1e-112 408.7 276 73.6
AUR62007400 Chenopodium quinoa HOM05D001237 ORTHO05D009110 7.0e-112 407.9 273 73.6
ECA233G0844 Erigeron canadensis HOM05D001237 ORTHO05D009110 1.6e-111 406.8 291 70.4
Ah.07g201260 Amaranthus hybridus HOM05D001237 ORTHO05D009110 2.0e-111 406.4 257 76.7
AL8G21880 Arabidopsis lyrata HOM05D001237 ORTHO05D009110 2.0e-111 406.4 267 74.2
C07p39410 Brassica napus HOM05D001237 ORTHO05D009110 2.6e-111 406.0 263 74.5
Carub.0008s0852 Capsella rubella HOM05D001237 ORTHO05D009110 3.5e-111 405.6 263 74.9
Ca_25144_v3 Cicer arietinum L. HOM05D001237 ORTHO05D000217 6.5e-110 401.4 247 78.1
Glyma.01G147700 Glycine max HOM05D001237 ORTHO05D009110 3.2e-109 399.1 307 66.8
Sp2g19180 Schrenkiella parvula HOM05D001237 ORTHO05D009110 3.2e-109 399.1 273 72.2
Thhalv10004626m.g Eutrema salsugineum HOM05D001237 ORTHO05D009110 7.2e-109 397.9 263 73.4
Aa31LG9G15560 Aethionema arabicum HOM05D001237 ORTHO05D009110 9.4e-109 397.5 274 71.5
CSS0010822 Camellia sinensis var. sinensis HOM05D001237 ORTHO05D009110 2.7e-108 396.0 288 69.4
BolC7t44460H Brassica oleracea HOM05D001237 ORTHO05D009110 3.0e-107 392.5 253 73.9
Dinv15842 Davidia involucrata HOM05D001237 ORTHO05D009110 2.8e-105 386.0 245 76.3
CDE02G0540 Ceratophyllum demersum HOM05D001237 ORTHO05D009110 3.5e-103 379.0 226 80.1
Glyma.20G094800 Glycine max HOM05D001237 ORTHO05D009110 4.5e-103 378.6 226 80.5
Peaxi162Scf00408g00416 Petunia axillaris HOM05D001237 ORTHO05D009110 2.7e-100 369.4 283 66.8
Lsat_1_v5_gn_6_17621 Lactuca sativa HOM05D001237 ORTHO05D009110 5.2e-99 365.2 278 66.2
BcaC06g30758 Brassica carinata HOM05D001237 ORTHO05D009110 7.5e-98 361.3 304 61.5
Mapoly0052s0004 Marchantia polymorpha HOM05D001237 ORTHO05D009110 2.5e-93 346.3 251 65.7
Sabra03G0068500 Salix brachista HOM05D001237 ORTHO05D009110 7.2e-93 344.7 252 69.8
CARHR182950 Cardamine hirsuta HOM05D001237 ORTHO05D009110 1.2e-92 344.0 212 77.4
ClCG10G001120 Citrullus lanatus HOM05D001237 ORTHO05D009110 6.1e-92 341.7 265 67.2
SGA_v2.0_scaffold111G31373 Striga asiatica HOM05D001237 ORTHO05D009110 8.0e-92 341.3 203 81.3
HanXRQChr08g0226791 Helianthus annuus HOM05D001237 ORTHO05D009110 6.3e-89 331.6 217 75.1
unitig_747.g21357 Utricularia gibba HOM05D000467 ORTHO05D000379 4.1e-88 328.9 275 63.6
Pp3c12_7180 Physcomitrium patens HOM05D001237 ORTHO05D009110 5.9e-87 325.1 258 60.1
SMO356G0709 Selaginella moellendorffii HOM05D001237 ORTHO05D009110 1.5e-82 310.5 250 56.8
AagrBONN_evm.TU.Sc2ySwM_344.3693 Anthoceros agrestis HOM05D001237 ORTHO05D009110 2.5e-77 293.1 249 56.6
CBR_g18855 Chara braunii HOM05D001237 ORTHO05D009110 1.7e-73 280.4 216 61.1
arahy.Tifrunner.gnm1.ann1.3EKV6C Arachis hypogaea HOM05D001237 ORTHO05D009110 6.8e-67 258.5 233 59.7
arahy.Tifrunner.gnm1.ann1.YIEM7C Arachis hypogaea HOM05D001237 ORTHO05D009110 6.8e-67 258.5 233 59.7
Hund11115 Selenicereus undatus HOM05D001237 ORTHO05D009110 4.6e-63 245.7 152 78.3
QL12p001026 Quercus lobata HOM05D001237 ORTHO05D009110 1.6e-60 237.3 174 68.4
Glyma.09G212000 Glycine max HOM05D001237 ORTHO05D009110 3.6e-60 236.1 173 66.5
SEGI_12758 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 4.0e-59 232.6 135 79.3
RcHm_v2.0_Chr7g0213121 Rosa chinensis HOM05D001237 ORTHO05D009110 1.6e-52 210.7 250 50.0
Cre04.g212500 Chlamydomonas reinhardtii HOM05D001237 ORTHO05D009110 1.9e-48 197.2 283 41.7
PRCOL_00004822 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 2.8e-44 183.3 270 41.5
HPP92_025933 Vanilla planifolia HOM05D001237 ORTHO05D009110 4.9e-41 172.6 135 62.2
Lju2073A0T61 Lonicera japonica HOM05D001237 ORTHO05D009110 4.2e-40 169.5 112 74.1
MCO15G307 Micromonas commoda HOM05D001237 ORTHO05D009110 3.0e-38 163.3 275 34.9
Sopen09g023280 Solanum pennellii HOM05D001237 ORTHO05D009110 2.8e-36 156.8 98 75.5
Gohir.D08G172350 Gossypium hirsutum HOM05D001237 ORTHO05D009110 2.7e-31 140.2 79 78.5
PRCOL_00006184 Prasinoderma coloniale HOM05D001237 ORTHO05D009110 1.1e-24 118.2 270 29.3
MCO12G167 Micromonas commoda HOM05D001237 ORTHO05D009110 9.3e-24 115.2 276 29.3
SEGI_16157 Sequoiadendron giganteum HOM05D001237 ORTHO05D009110 5.7e-21 105.9 142 45.8
SalBow1G6490 Salvia bowleyana HOM05D001237 ORTHO05D009110 8.2e-20 102.1 83 55.4
Gohir.D08G172400 Gossypium hirsutum HOM05D001237 ORTHO05D009110 1.2e-15 88.2 94 53.2
FAN04G3094 Fragaria x ananassa HOM05D001237 ORTHO05D009110 1.4e-14 84.7 72 58.3
HanXRQChr04g0099681 Helianthus annuus HOM05D005969 ORTHO05D007407 1.5e-10 71.2 283 27.2
MELO3C023469.2 Cucumis melo HOM05D005969 ORTHO05D007407 4.5e-10 69.7 341 26.1
arahy.Tifrunner.gnm1.ann1.M9PPGY Arachis hypogaea HOM05D005969 ORTHO05D007407 1.0e-09 68.6 322 23.9
Rhsim08G0203900 Rhododendron simsii HOM05D005969 ORTHO05D007407 1.0e-09 68.6 280 26.1
arahy.Tifrunner.gnm1.ann1.WI8D6W Arachis hypogaea HOM05D005969 ORTHO05D007407 1.7e-09 67.8 283 25.4
Sed0009912 Sechium edule HOM05D005969 ORTHO05D007407 2.2e-09 67.4 343 26.2
Nitab4.5_0008962g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 2.9e-09 67.0 293 24.6
Ciclev10025812m.g Citrus clementina HOM05D005969 ORTHO05D007407 5.0e-09 66.2 283 25.1
Nitab4.5_0000886g0040 Nicotiana tabacum HOM05D005969 ORTHO05D007407 5.0e-09 66.2 293 24.6
PSO541G5031 Papaver somniferum HOM05D005969 ORTHO05D007407 5.0e-09 66.2 338 24.0
Glyma.08G219200 Glycine max HOM05D005969 ORTHO05D007407 6.5e-09 65.9 310 25.8
Gohir.D05G119800 Gossypium hirsutum HOM05D005969 ORTHO05D007407 8.5e-09 65.5 297 24.2
Gorai.009G123400 Gossypium raimondii HOM05D005969 ORTHO05D007407 8.5e-09 65.5 297 24.2
Migut.I00689 Erythranthe guttata HOM05D005969 ORTHO05D007407 1.1e-08 65.1 298 25.5
Mapoly0001s0169 Marchantia polymorpha HOM05D005969 ORTHO05D007407 1.1e-08 65.1 288 26.4
Sc12g0005780 Simmondsia chinensis HOM05D005969 ORTHO05D007407 1.1e-08 65.1 274 27.0
Hma1.2p1_0109F.1_g052610 Hydrangea macrophylla HOM05D005969 ORTHO05D007407 1.4e-08 64.7 298 24.2
Lsat_1_v5_gn_1_31041 Lactuca sativa HOM05D005969 ORTHO05D007407 1.4e-08 64.7 283 26.1
PSO675G4447 Papaver somniferum HOM05D005969 ORTHO05D007407 1.4e-08 64.7 296 24.7
CDE06G0123 Ceratophyllum demersum HOM05D005969 ORTHO05D007407 1.9e-08 64.3 285 24.9
Nn6g31679 Nelumbo nucifera HOM05D005969 ORTHO05D007407 1.9e-08 64.3 348 23.6
Potri.001G044000 Populus trichocarpa HOM05D005969 ORTHO05D007407 1.9e-08 64.3 283 24.7
Sabra01G0030300 Salix brachista HOM05D005969 ORTHO05D007407 1.9e-08 64.3 283 24.7
THA.LOC104814755 Tarenaya hassleriana HOM05D005969 ORTHO05D007407 2.5e-08 63.9 280 26.4
A07p39070 Brassica napus HOM05D005969 ORTHO05D007407 3.2e-08 63.5 278 24.8
C06p47280 Brassica napus HOM05D005969 ORTHO05D007407 3.2e-08 63.5 278 24.8
BolC6t39767H Brassica oleracea HOM05D005969 ORTHO05D007407 3.2e-08 63.5 278 24.8
BraA07t31457Z Brassica rapa HOM05D005969 ORTHO05D007407 3.2e-08 63.5 278 24.8
Cc04_g05150 Coffea canephora HOM05D005969 ORTHO05D007407 3.2e-08 63.5 302 24.8
MBI05_g33301_MAGBIO Magnolia biondii HOM05D005969 ORTHO05D007407 3.2e-08 63.5 295 25.4
Aa31LG4G3330 Aethionema arabicum HOM05D005969 ORTHO05D007407 4.2e-08 63.2 275 26.5
Cpa.g.sc1250.2 Carica papaya HOM05D005969 ORTHO05D007407 4.2e-08 63.2 283 24.7
SGA_v2.0_scaffold37G14696 Striga asiatica HOM05D005969 ORTHO05D007407 4.2e-08 63.2 283 25.4
ECA247G4019 Erigeron canadensis HOM05D005969 ORTHO05D007407 5.5e-08 62.8 283 26.5
MD10G1047600 Malus domestica HOM05D005969 ORTHO05D007407 5.5e-08 62.8 298 25.8
Thecc.06G042200 Theobroma cacao HOM05D005969 ORTHO05D007407 5.5e-08 62.8 283 25.1
Eucgr.F03965 Eucalyptus grandis HOM05D005969 ORTHO05D007407 7.2e-08 62.4 283 26.1
Gohir.A05G118900 Gossypium hirsutum HOM05D005969 ORTHO05D007407 7.2e-08 62.4 297 23.9
Sp5g28020 Schrenkiella parvula HOM05D005969 ORTHO05D007407 7.2e-08 62.4 278 25.9
Actinidia18250 Actinidia chinensis HOM05D005969 ORTHO05D007407 9.4e-08 62.0 280 25.7
Thhalv10018762m.g Eutrema salsugineum HOM05D005969 ORTHO05D007407 9.4e-08 62.0 278 24.8
VMungo0331G0028 Vigna mungo HOM05D005969 ORTHO05D007407 9.4e-08 62.0 277 25.6
PGSC0003DMG402028489 Solanum tuberosum HOM05D005969 ORTHO05D007407 1.2e-07 61.6 279 24.7
COL.COLO4_26714 Corchorus olitorius HOM05D005969 ORTHO05D007407 1.6e-07 61.2 280 24.3
Sopen06g025730 Solanum pennellii HOM05D005969 ORTHO05D007407 1.6e-07 61.2 279 24.7
Dinv23280 Davidia involucrata HOM05D005969 ORTHO05D007407 2.1e-07 60.8 285 24.6
Phvul.010G161700 Phaseolus vulgaris HOM05D005969 ORTHO05D007407 2.1e-07 60.8 290 24.8
CiPaw.01G255000 Carya illinoinensis HOM05D005969 ORTHO05D007407 2.7e-07 60.5 285 25.3
Lalb_Chr01g0012061 Lupinus albus HOM05D005969 ORTHO05D007407 2.7e-07 60.5 286 24.8
CAN.G1932.3 Capsicum annuum HOM05D005969 ORTHO05D007407 3.6e-07 60.1 282 25.9
Duzib235G1247 Durio zibethinus HOM05D005969 ORTHO05D007407 3.6e-07 60.1 280 23.6
FvH4_6g28580 Fragaria vesca HOM05D005969 ORTHO05D007407 3.6e-07 60.1 281 24.9
Cre03.g184550 Chlamydomonas reinhardtii HOM05D005969 ORTHO05D007407 4.7e-07 59.7 267 25.5
TAR628G0900 Trochodendron aralioides HOM05D005969 ORTHO05D007407 4.7e-07 59.7 318 25.2
AUR62027000 Chenopodium quinoa HOM05D005969 ORTHO05D007407 6.1e-07 59.3 275 25.5
FAN02G2588 Fragaria x ananassa HOM05D005969 ORTHO05D007407 1.0e-06 58.5 281 24.6
HanXRQChr14g0426701 Helianthus annuus HOM05D005969 ORTHO05D007407 1.0e-06 58.5 236 27.1
Psat7g262880 Pisum sativum HOM05D005969 ORTHO05D007407 1.8e-06 57.8 281 24.9
TWI12G1191 Tripterygium wilfordii HOM05D005969 ORTHO05D007407 3.0e-06 57.0 285 24.9


User provided reference genes

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