Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 1.6e-219 765.8 383 100.0
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 1.8e-117 426.8 246 78.9
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 5.7e-116 421.8 257 72.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 1.3e-115 420.6 226 81.4
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 2.8e-115 419.5 226 81.9
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.2e-115 417.9 238 74.8
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.1e-114 416.0 226 77.4
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 7.0e-114 414.8 229 77.7
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 1.6e-113 413.7 235 76.2
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 3.5e-113 412.5 226 79.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 3.5e-113 412.5 226 77.4
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 4.5e-113 412.1 226 77.9
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 4.5e-113 412.1 234 75.6
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 4.5e-113 412.1 224 80.4
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 5.9e-113 411.8 228 77.2
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.9e-113 411.8 226 77.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 7.7e-113 411.4 263 70.3
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.0e-112 411.0 226 77.9
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.0e-112 411.0 234 76.5
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.0e-112 411.0 250 72.4
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.0e-112 411.0 226 77.0
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.3e-112 410.6 276 68.5
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 1.3e-112 410.6 281 67.3
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 1.7e-112 410.2 224 79.0
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.7e-112 410.2 226 78.8
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 2.2e-112 409.8 225 80.0
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.2e-112 409.8 226 79.6
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 2.2e-112 409.8 224 79.9
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 2.2e-112 409.8 224 80.4
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 3.8e-112 409.1 244 74.6
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.8e-112 409.1 226 77.9
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 3.8e-112 409.1 233 74.2
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 5.0e-112 408.7 226 78.8
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 5.0e-112 408.7 226 79.2
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.0e-112 408.7 223 78.5
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 6.5e-112 408.3 226 78.3
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 6.5e-112 408.3 226 76.1
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 8.5e-112 407.9 229 77.7
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 8.5e-112 407.9 222 80.2
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.1e-111 407.5 243 71.2
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.1e-111 407.5 223 80.7
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 1.1e-111 407.5 224 79.9
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.5e-111 407.1 226 78.8
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 1.5e-111 407.1 233 76.8
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.9e-111 406.8 225 79.6
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 1.9e-111 406.8 230 74.8
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.9e-111 406.8 224 77.2
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 2.5e-111 406.4 226 75.2
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 2.5e-111 406.4 230 74.8
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.2e-111 406.0 226 77.4
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.2e-111 406.0 233 76.0
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 3.2e-111 406.0 229 74.7
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 4.2e-111 405.6 226 75.2
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 4.2e-111 405.6 224 79.0
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.2e-111 405.6 225 79.1
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 5.5e-111 405.2 229 75.1
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 5.5e-111 405.2 228 78.5
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 7.2e-111 404.8 235 76.2
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 7.2e-111 404.8 233 75.5
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 9.4e-111 404.4 226 77.9
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 9.4e-111 404.4 233 75.5
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 1.2e-110 404.1 224 78.6
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.6e-110 403.7 233 75.5
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.1e-110 403.3 261 69.3
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.1e-110 403.3 223 78.5
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.7e-110 402.9 224 77.7
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 2.7e-110 402.9 224 77.7
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.7e-110 402.9 226 75.2
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 2.7e-110 402.9 223 78.0
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.7e-110 402.9 223 79.4
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 2.7e-110 402.9 237 74.7
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 3.6e-110 402.5 224 79.0
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 3.6e-110 402.5 226 74.3
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 3.6e-110 402.5 229 76.0
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 3.6e-110 402.5 230 75.2
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 4.7e-110 402.1 276 66.7
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 4.7e-110 402.1 235 74.0
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.7e-110 402.1 234 73.1
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 4.7e-110 402.1 230 77.0
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 6.1e-110 401.7 226 77.9
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 6.1e-110 401.7 268 67.5
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 8.0e-110 401.4 226 77.4
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 8.0e-110 401.4 225 76.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 8.0e-110 401.4 226 74.3
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.0e-109 401.0 226 77.0
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.0e-109 401.0 239 74.9
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.0e-109 401.0 226 76.1
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.4e-109 400.6 238 73.9
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 1.4e-109 400.6 235 74.9
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 1.4e-109 400.6 247 73.7
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.4e-109 400.6 223 78.0
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 1.8e-109 400.2 226 76.5
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 1.8e-109 400.2 229 75.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.8e-109 400.2 226 77.0
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.3e-109 399.8 226 74.3
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-109 399.8 224 78.6
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-109 399.8 222 78.8
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.3e-109 399.8 226 74.3
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.0e-109 399.4 226 76.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 4.0e-109 399.1 226 76.5
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 4.0e-109 399.1 226 76.1
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.2e-109 398.7 226 75.7
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 5.2e-109 398.7 233 73.8
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 5.2e-109 398.7 262 69.5
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 6.8e-109 398.3 224 76.8
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 6.8e-109 398.3 224 76.8
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 6.8e-109 398.3 247 73.3
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.8e-109 398.3 249 69.9
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 6.8e-109 398.3 249 69.9
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 6.8e-109 398.3 229 74.7
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.2e-108 397.5 224 75.4
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.2e-108 397.5 262 69.1
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 1.5e-108 397.1 236 70.8
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.5e-108 397.1 224 76.3
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.5e-108 397.1 262 69.1
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.5e-108 397.1 237 71.7
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 2.0e-108 396.7 232 71.6
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.0e-108 396.7 226 75.7
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 3.4e-108 396.0 226 75.2
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 3.4e-108 396.0 224 76.3
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 3.4e-108 396.0 229 75.5
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 4.4e-108 395.6 224 76.3
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 5.7e-108 395.2 226 75.2
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 5.7e-108 395.2 226 75.2
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 5.7e-108 395.2 226 75.7
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 9.8e-108 394.4 224 75.4
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.7e-107 393.7 226 74.8
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.7e-107 393.7 227 74.4
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.7e-107 393.7 236 72.0
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.2e-107 393.3 224 76.8
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 2.8e-107 392.9 226 73.5
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.8e-107 392.9 227 74.9
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 6.3e-107 391.7 224 75.9
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 6.3e-107 391.7 226 73.9
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 8.3e-107 391.3 223 75.8
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.8e-106 390.2 236 69.9
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.9e-105 385.2 240 71.2
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 7.7e-105 384.8 226 73.5
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.2e-104 383.3 210 79.5
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 9.4e-103 377.9 224 72.8
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.1e-102 376.7 224 72.3
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.6e-102 375.9 276 61.6
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.3e-99 367.5 246 67.1
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.4e-98 364.0 234 69.7
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 1.3e-96 357.5 230 66.1
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.3e-96 357.5 230 65.7
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 2.3e-96 356.7 226 66.8
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 1.2e-94 350.9 238 63.9
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 3.0e-93 346.3 237 65.0
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 2.0e-92 343.6 194 78.4
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.1e-79 301.2 234 59.8
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 6.8e-77 292.0 226 60.6
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.2e-75 287.0 164 77.4
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.4e-74 284.3 152 77.6
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 7.8e-73 278.5 152 75.0
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.4e-66 257.7 163 69.9
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.1e-54 217.2 224 46.9
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.7e-48 197.6 226 44.7
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.0e-40 171.8 206 45.1
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 3.4e-36 156.8 96 71.9
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 3.4e-28 130.2 107 57.9
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 9.3e-26 122.1 116 50.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 4.5e-20 103.2 63 71.4
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 8.2e-14 82.4 51 58.8
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 2.2e-11 74.3 64 56.2


User provided reference genes

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