Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 7.7e-245 850.1 455 100.0
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 3.2e-182 642.1 447 76.1
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 7.1e-182 641.0 443 76.7
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 9.3e-182 640.6 443 76.7
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 2.7e-181 639.0 443 76.7
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 3.0e-180 635.6 441 75.3
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 3.9e-180 635.2 443 76.3
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 5.1e-180 634.8 447 75.6
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 8.7e-180 634.0 448 75.0
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 1.9e-179 632.9 452 74.3
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 4.3e-179 631.7 450 74.7
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 7.4e-179 630.9 453 74.2
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 9.6e-179 630.6 442 75.6
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 9.6e-179 630.6 442 75.6
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 9.6e-179 630.6 442 75.6
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.6e-178 629.8 446 75.3
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.6e-178 629.8 429 78.1
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 1.6e-178 629.8 446 74.0
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 3.7e-178 628.6 450 74.0
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 8.1e-178 627.5 435 74.7
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 1.4e-177 626.7 442 75.3
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 1.4e-177 626.7 433 78.1
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.1e-177 625.5 448 73.9
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 5.3e-177 624.8 447 74.5
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 6.9e-177 624.4 441 73.9
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 1.2e-176 623.6 441 74.4
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 1.5e-176 623.2 421 77.2
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 2.0e-176 622.9 442 75.6
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 2.0e-176 622.9 448 73.7
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.0e-176 622.9 448 73.7
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 2.6e-176 622.5 442 74.7
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 4.5e-176 621.7 445 74.4
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 4.5e-176 621.7 448 73.4
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 4.5e-176 621.7 438 75.3
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 7.6e-176 620.9 442 74.2
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 9.9e-176 620.5 442 73.3
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.3e-175 620.2 442 74.4
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 1.3e-175 620.2 441 74.4
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.2e-175 619.4 443 73.8
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.2e-175 619.4 449 73.3
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 2.2e-175 619.4 434 74.9
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 2.9e-175 619.0 422 77.0
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 2.9e-175 619.0 442 74.2
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 3.8e-175 618.6 442 74.2
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 3.8e-175 618.6 426 76.5
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 4.9e-175 618.2 437 74.6
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 6.4e-175 617.8 456 71.7
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 8.4e-175 617.5 445 73.0
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.4e-174 615.9 442 74.2
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 2.4e-174 615.9 422 77.5
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 4.2e-174 615.1 422 76.8
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 7.1e-174 614.4 438 74.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 7.1e-174 614.4 453 73.5
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 9.3e-174 614.0 443 73.6
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 9.3e-174 614.0 441 73.5
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.2e-173 613.6 422 76.5
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.2e-173 613.6 422 76.5
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 1.2e-173 613.6 422 76.8
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.2e-173 613.6 450 72.7
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 1.6e-173 613.2 450 71.3
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.1e-173 612.8 422 76.3
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 2.1e-173 612.8 442 72.9
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 2.1e-173 612.8 420 76.4
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 3.5e-173 612.1 440 74.1
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 6.0e-173 611.3 443 73.4
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 7.9e-173 610.9 435 74.0
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 7.9e-173 610.9 435 74.7
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 1.0e-172 610.5 432 73.8
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 1.0e-172 610.5 436 72.7
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 1.3e-172 610.1 435 73.8
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 2.3e-172 609.4 439 72.9
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 2.3e-172 609.4 425 75.5
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 5.1e-172 608.2 442 73.8
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 8.7e-172 607.4 420 76.0
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 1.9e-171 606.3 437 72.3
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 2.5e-171 605.9 495 67.9
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 2.5e-171 605.9 443 72.7
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 5.6e-171 604.7 412 76.7
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 4.8e-170 601.7 439 72.7
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 6.2e-170 601.3 491 67.2
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 1.1e-169 600.5 437 73.2
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 1.1e-169 600.5 443 71.6
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.1e-169 600.5 446 70.0
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.4e-169 600.1 476 68.1
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 1.8e-169 599.7 432 73.6
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 2.4e-169 599.4 440 72.0
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 1.2e-168 597.0 439 72.9
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.5e-168 596.7 442 70.4
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 2.0e-168 596.3 446 71.1
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.0e-167 594.0 445 71.2
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 1.3e-167 593.6 404 77.0
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 1.7e-167 593.2 422 74.4
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 1.7e-167 593.2 422 74.4
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.7e-167 593.2 424 73.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 1.7e-167 593.2 415 74.0
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 2.2e-167 592.8 422 74.4
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 4.9e-167 591.7 450 70.7
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 6.5e-167 591.3 422 75.1
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 5.5e-166 588.2 454 69.6
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.2e-165 587.0 448 70.5
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.6e-165 586.6 431 71.2
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 7.9e-165 584.3 449 69.9
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 3.9e-164 582.0 470 67.2
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 8.7e-164 580.9 446 69.5
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 1.9e-163 579.7 422 73.0
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 2.5e-163 579.3 421 72.2
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 2.5e-163 579.3 420 72.9
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 3.7e-162 575.5 395 76.5
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 2.1e-157 559.7 450 65.3
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 3.7e-154 548.9 441 67.3
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 3.9e-148 528.9 421 69.4
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 4.5e-144 515.4 452 63.1
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 1.3e-143 513.8 451 63.9
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 3.0e-140 502.7 436 59.6
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.5e-139 500.4 420 64.3
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.5e-139 500.4 420 64.3
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 2.9e-135 486.1 447 58.6
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 2.3e-132 476.5 415 59.8
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 4.1e-121 439.1 367 62.4
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.1e-118 431.0 401 62.8
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 4.1e-105 386.0 296 67.9
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 6.0e-104 382.1 273 70.0
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 2.6e-99 366.7 413 49.4
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 5.8e-99 365.5 229 83.0
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.7e-80 303.5 427 43.8
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 1.1e-73 281.6 446 40.1
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 6.6e-71 272.3 391 39.6
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.9e-70 270.8 169 85.8
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 2.8e-69 266.9 297 54.2
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 2.0e-67 260.8 222 60.8
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 4.2e-65 253.1 155 87.1
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 3.9e-63 246.5 218 61.0
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 6.2e-61 239.2 419 33.2
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.7e-58 231.1 352 38.4
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.6e-53 214.5 454 36.8
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 2.0e-51 207.6 162 67.3
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 1.9e-41 174.5 233 46.8
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 3.7e-37 160.2 126 65.1
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 7.4e-30 136.0 120 65.8
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 8.2e-29 132.5 135 56.3
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 2.2e-26 124.4 106 59.4
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 1.6e-24 118.2 98 70.4
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 1.1e-22 112.1 84 69.0
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 3.2e-17 94.0 403 26.8
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 3.4e-14 84.0 103 47.6
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 7.5e-14 82.8 221 30.8
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 4.5e-11 73.6 425 24.0
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.0e-10 72.4 67 62.7


User provided reference genes

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