Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 9.0e-170 600.1 295 100.0
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 3.5e-89 332.4 290 61.4
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.7e-88 330.1 291 60.1
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.5e-87 326.2 295 58.6
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 4.3e-87 325.5 299 59.9
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 4.4e-84 315.5 299 56.9
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 7.6e-84 314.7 292 60.3
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 9.9e-84 314.3 291 57.7
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 8.4e-83 311.2 295 57.6
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 8.4e-83 311.2 295 57.6
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 1.1e-82 310.8 292 57.5
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 1.4e-82 310.5 277 58.1
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 3.2e-82 309.3 290 57.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.2e-82 309.3 295 55.6
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.2e-82 309.3 286 58.0
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 4.2e-82 308.9 303 56.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 9.2e-82 307.8 294 55.1
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.1e-81 306.6 294 56.5
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 2.7e-81 306.2 294 54.4
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 3.5e-81 305.8 278 57.2
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 6.0e-81 305.1 291 57.0
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.0e-80 304.3 275 59.6
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 1.3e-80 303.9 292 54.5
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.3e-80 303.9 294 55.4
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 2.3e-80 303.1 292 56.5
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 3.9e-80 302.4 281 57.3
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 6.6e-80 301.6 275 58.2
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.5e-79 300.4 294 54.1
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.5e-79 300.4 291 53.6
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 1.9e-79 300.1 292 54.5
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.9e-79 300.1 276 58.3
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 2.5e-79 299.7 292 54.8
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.3e-79 299.3 295 54.6
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 4.3e-79 298.9 291 54.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 5.6e-79 298.5 303 52.8
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 7.3e-79 298.1 294 53.1
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.8e-78 296.2 311 51.4
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.2e-78 295.0 276 57.2
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 6.2e-78 295.0 287 55.7
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 6.2e-78 295.0 307 54.7
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 8.1e-78 294.7 306 53.6
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 1.1e-77 294.3 292 54.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.4e-77 293.9 292 54.1
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.8e-77 293.5 296 53.0
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 2.4e-77 293.1 294 53.1
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.1e-77 292.7 296 53.0
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 3.1e-77 292.7 293 52.6
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 4.0e-77 292.4 315 51.4
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 6.9e-77 291.6 294 52.4
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.2e-76 290.8 302 51.7
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.2e-76 290.8 295 55.3
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.0e-76 290.0 271 58.3
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 2.6e-76 289.7 293 52.2
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 3.8e-75 285.8 294 51.7
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 6.4e-75 285.0 281 55.5
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 1.4e-74 283.9 294 52.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 1.4e-74 283.9 293 52.6
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.4e-74 283.1 278 54.7
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 3.2e-74 282.7 295 51.2
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 7.1e-74 281.6 296 51.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 1.2e-73 280.8 307 50.8
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 2.1e-73 280.0 219 64.4
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 7.8e-73 278.1 294 50.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.3e-72 277.3 294 51.0
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.7e-72 276.9 291 50.5
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 2.3e-72 276.6 294 51.0
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.0e-72 276.2 294 51.0
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 8.7e-72 274.6 268 54.1
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.9e-71 273.5 273 53.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 7.3e-71 271.6 294 50.3
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.1e-70 270.0 281 51.2
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.1e-70 270.0 296 51.0
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 4.8e-70 268.9 313 47.9
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 8.1e-70 268.1 295 49.8
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.4e-69 267.3 297 49.8
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 1.4e-69 267.3 288 50.3
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 1.2e-68 264.2 279 50.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.2e-68 264.2 293 49.8
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 9.9e-68 261.2 281 53.0
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 4.9e-67 258.8 292 50.7
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 4.9e-67 258.8 295 50.5
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 3.5e-65 252.7 317 48.9
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 4.6e-65 252.3 294 50.7
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 6.0e-65 251.9 277 49.5
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 8.1e-62 241.5 285 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 3.1e-61 239.6 294 44.9
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 7.1e-58 228.4 314 46.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 9.3e-58 228.0 347 40.1
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 4.3e-55 219.2 175 65.1
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 4.3e-55 219.2 296 43.9
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 2.1e-54 216.9 175 62.3
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 4.8e-54 215.7 246 47.2
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.4e-53 214.2 306 41.2
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 2.4e-53 213.4 297 44.4
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.3e-53 212.2 285 43.2
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 2.6e-52 209.9 175 64.6
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.0e-51 208.0 278 40.3
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 3.9e-48 196.1 167 60.5
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-47 194.1 162 63.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 1.9e-47 193.7 288 38.9
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 5.7e-47 192.2 282 42.9
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 3.7e-46 189.5 293 38.9
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 8.2e-46 188.3 280 42.1
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.0e-44 183.7 107 80.4
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.8e-43 179.5 103 81.6
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 3.8e-43 179.5 302 38.7
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 3.6e-41 172.9 102 78.4
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-40 171.0 100 83.0
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 5.1e-40 169.1 278 39.9
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 8.8e-40 168.3 327 38.2
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 9.7e-39 164.9 313 39.0
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 6.3e-38 162.2 289 36.0
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.4e-36 156.4 95 77.9
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 8.5e-35 151.8 207 44.0
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.4e-34 151.0 218 41.7
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.2e-33 147.9 187 43.3
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.6e-33 146.4 109 60.6
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 6.7e-32 142.1 310 32.9
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.2e-30 137.1 294 35.4
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 3.7e-30 136.3 177 45.2
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 8.2e-30 135.2 292 34.9
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 2.0e-28 130.6 294 34.7
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.5e-27 125.2 211 38.4
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.0e-23 114.0 97 56.7
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.3e-23 113.2 153 40.5
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.7e-19 100.9 157 37.6
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 2.2e-19 100.5 111 44.1
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 8.5e-19 98.6 205 34.6
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.6e-17 93.2 50 86.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.6e-15 87.0 52 82.7
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.4e-15 86.3 147 36.7
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 5.7e-15 85.9 147 36.7
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 3.5e-12 76.6 116 38.8
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 3.6e-09 66.6 51 68.6
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 5.7e-07 59.3 94 42.6
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.2e-06 57.4 69 46.4


User provided reference genes

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