Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 1.1e-53 213.0 100 100.0
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 7.6e-20 100.5 87 57.5
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 7.6e-20 100.5 88 58.0
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 9.9e-20 100.1 86 57.0
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 2.2e-19 99.0 80 55.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.9e-19 98.6 86 54.7
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.4e-19 97.4 82 57.3
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.4e-19 97.4 89 53.9
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 6.4e-19 97.4 88 53.4
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-18 96.7 81 58.0
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.1e-18 96.7 88 53.4
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.1e-18 96.7 83 54.2
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.1e-18 96.7 83 54.2
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.1e-18 96.7 93 50.5
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.1e-18 96.7 79 58.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 1.1e-18 96.7 85 51.8
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.4e-18 96.3 89 52.8
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 2.4e-18 95.5 87 54.0
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.4e-18 95.5 81 58.0
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.2e-18 95.1 93 50.5
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.2e-18 95.1 88 54.5
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.2e-18 95.1 90 50.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 3.2e-18 95.1 90 51.1
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 5.4e-18 94.4 88 53.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 5.4e-18 94.4 83 50.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 5.4e-18 94.4 91 51.6
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 85 52.9
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 85 52.9
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 85 52.9
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.1e-18 94.0 85 52.9
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 9.3e-18 93.6 82 53.7
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 9.3e-18 93.6 88 55.7
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.2e-17 93.2 86 51.2
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 1.6e-17 92.8 85 56.5
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 2.1e-17 92.4 80 51.2
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.7e-17 92.0 84 52.4
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 3.5e-17 91.7 87 52.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 3.5e-17 91.7 85 51.8
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 3.5e-17 91.7 90 52.2
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 3.5e-17 91.7 103 48.5
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 4.6e-17 91.3 87 52.9
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 6.0e-17 90.9 90 52.2
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 6.0e-17 90.9 82 51.2
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 6.0e-17 90.9 84 52.4
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 7.9e-17 90.5 87 51.7
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 7.9e-17 90.5 86 51.2
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 7.9e-17 90.5 91 49.5
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.9e-17 90.5 88 52.3
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 7.9e-17 90.5 86 48.8
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.0e-16 90.1 86 51.2
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.0e-16 90.1 86 51.2
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.0e-16 90.1 85 48.2
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 1.0e-16 90.1 82 53.7
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.3e-16 89.7 85 49.4
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.3e-16 89.7 81 53.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.8e-16 89.4 80 55.0
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 1.8e-16 89.4 88 50.0
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 2.3e-16 89.0 87 51.7
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.3e-16 89.0 85 49.4
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.0e-16 88.6 81 51.9
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 3.0e-16 88.6 85 51.8
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 3.0e-16 88.6 92 48.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 3.0e-16 88.6 91 49.5
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.9e-16 88.2 91 47.3
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 3.9e-16 88.2 90 52.2
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.9e-16 88.2 84 51.2
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 5.1e-16 87.8 82 52.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 5.1e-16 87.8 88 48.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 5.1e-16 87.8 88 48.9
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 5.1e-16 87.8 86 50.0
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 6.7e-16 87.4 84 52.4
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 6.7e-16 87.4 84 52.4
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.7e-16 87.4 88 51.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 6.7e-16 87.4 92 48.9
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.7e-16 87.4 80 53.8
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.7e-16 87.4 74 56.8
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 8.7e-16 87.0 86 50.0
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-15 86.7 86 48.8
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-15 86.7 86 48.8
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-15 86.7 86 48.8
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.1e-15 86.7 86 50.0
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.1e-15 86.7 89 47.2
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.5e-15 86.3 86 53.5
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 1.5e-15 86.3 86 47.7
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 1.5e-15 86.3 86 47.7
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 1.5e-15 86.3 90 46.7
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.5e-15 86.3 87 48.3
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.5e-15 86.3 86 51.2
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.5e-15 86.3 93 48.4
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.5e-15 86.3 84 48.8
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.9e-15 85.9 83 49.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.9e-15 85.9 93 49.5
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.5e-15 85.5 87 49.4
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 2.5e-15 85.5 89 49.4
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 4.3e-15 84.7 83 49.4
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 4.3e-15 84.7 83 49.4
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 4.3e-15 84.7 83 49.4
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.3e-15 84.7 87 47.1
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.3e-15 84.7 87 47.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.3e-15 84.7 87 47.1
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 4.3e-15 84.7 90 47.8
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.6e-15 84.3 81 49.4
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 5.6e-15 84.3 83 49.4
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 9.6e-15 83.6 83 44.6
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 9.6e-15 83.6 93 48.4
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 9.6e-15 83.6 90 51.1
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.6e-15 83.6 83 47.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-14 83.2 83 48.2
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.3e-14 83.2 83 48.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-14 83.2 82 53.7
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.3e-14 83.2 80 56.2
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.6e-14 82.8 87 47.1
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.6e-14 82.8 84 51.2
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 1.6e-14 82.8 79 55.7
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.6e-14 82.8 89 49.4
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.6e-14 82.8 84 46.4
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.1e-14 82.4 91 48.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 2.1e-14 82.4 91 46.2
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.1e-14 82.4 79 54.4
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 2.1e-14 82.4 93 49.5
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.8e-14 82.0 83 49.4
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.8e-14 82.0 87 48.3
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 3.7e-14 81.6 85 49.4
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 3.7e-14 81.6 79 45.6
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 6.2e-14 80.9 92 45.7
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.2e-14 80.9 89 47.2
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 8.1e-14 80.5 93 46.2
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 8.1e-14 80.5 87 46.0
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.1e-14 80.5 87 44.8
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 8.1e-14 80.5 88 46.6
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.1e-13 80.1 77 49.4
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 1.1e-13 80.1 77 51.9
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 1.1e-13 80.1 79 46.8
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.4e-13 79.7 93 47.3
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.8e-13 79.3 84 46.4
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.4e-13 79.0 86 43.0
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 2.4e-13 79.0 84 51.2
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 3.1e-13 78.6 94 41.5
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 3.1e-13 78.6 80 46.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 5.3e-13 77.8 86 44.2
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 6.9e-13 77.4 94 43.6
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 6.9e-13 77.4 88 43.2
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 6.9e-13 77.4 83 49.4
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 6.9e-13 77.4 84 50.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.0e-13 77.0 88 48.9
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 9.0e-13 77.0 89 48.3
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.5e-12 76.3 91 47.3
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.5e-12 76.3 97 44.3
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.5e-12 76.3 63 54.0
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.0e-12 75.9 84 52.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 2.0e-12 75.9 86 44.2
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.0e-12 75.9 80 47.5
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.6e-12 75.5 89 48.3
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 3.4e-12 75.1 78 51.3
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 5.8e-12 74.3 80 43.8
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 5.8e-12 74.3 78 46.2
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 7.6e-12 73.9 85 48.2
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.3e-11 73.2 86 43.0
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.7e-11 72.8 62 53.2
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 1.7e-11 72.8 88 44.3
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.7e-11 72.8 79 45.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 2.2e-11 72.4 89 42.7
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 2.2e-11 72.4 81 44.4
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.9e-11 72.0 88 44.3
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 2.9e-11 72.0 81 44.4
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.4e-10 69.7 83 47.0
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-10 69.7 81 45.7
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 5.5e-10 67.8 85 45.9
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-09 66.6 101 40.6
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 1.2e-09 66.6 78 42.3
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.6e-09 66.2 89 41.6
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.6e-09 66.2 86 40.7
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.7e-09 65.5 82 43.9
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.7e-09 65.5 73 49.3
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.7e-09 65.5 79 40.5
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 4.6e-09 64.7 92 42.4
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 1.0e-08 63.5 80 38.8
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.0e-08 63.5 87 40.2
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 3.0e-08 62.0 88 35.2
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 6.7e-08 60.8 90 38.9
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.1e-07 60.1 77 39.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 7.4e-07 57.4 85 37.6
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.3e-06 56.6 85 37.6
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 1.6e-06 56.2 80 36.2
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 6.2e-06 54.3 86 36.0


User provided reference genes

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