Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 1.3e-111 406.4 201 100.0
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.6e-61 240.0 199 60.8
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.3e-58 230.3 201 58.2
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.4e-57 226.9 205 56.6
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.8e-57 226.5 205 57.6
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 1.8e-57 226.5 197 60.4
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 4.1e-57 225.3 200 59.0
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 5.4e-57 224.9 199 58.3
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 7.0e-57 224.6 201 56.2
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 7.0e-57 224.6 205 56.6
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 9.2e-57 224.2 198 57.1
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 1.6e-56 223.4 205 56.1
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 5.9e-56 221.5 199 58.3
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 7.8e-56 221.1 204 54.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 1.0e-55 220.7 197 57.9
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.3e-55 220.3 201 56.2
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.3e-55 220.3 201 56.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-55 220.3 197 57.4
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.3e-55 219.5 201 56.2
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 2.9e-55 219.2 198 58.1
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 1.1e-54 217.2 203 54.2
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.9e-54 216.5 201 57.7
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 2.5e-54 216.1 197 56.9
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 2.5e-54 216.1 198 55.1
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 3.3e-54 215.7 199 57.8
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 3.3e-54 215.7 197 56.3
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 4.3e-54 215.3 193 53.4
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 5.6e-54 214.9 194 56.7
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 5.6e-54 214.9 196 56.1
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 7.3e-54 214.5 195 57.4
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.2e-53 213.8 193 57.5
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.1e-53 213.0 203 55.2
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 2.8e-53 212.6 197 57.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 2.8e-53 212.6 197 55.3
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 2.8e-53 212.6 201 55.7
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 4.7e-53 211.8 195 56.4
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 1.0e-52 210.7 196 54.6
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-52 210.7 197 55.8
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 1.4e-52 210.3 197 52.3
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 2.3e-52 209.5 197 54.8
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 2.3e-52 209.5 197 54.8
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 2.3e-52 209.5 199 56.3
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 2.3e-52 209.5 203 53.7
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 3.1e-52 209.1 196 55.1
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 3.1e-52 209.1 196 55.1
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 3.1e-52 209.1 202 54.5
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.1e-52 209.1 198 55.6
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.0e-52 208.8 190 57.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 5.2e-52 208.4 199 55.8
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 6.8e-52 208.0 197 52.8
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 6.8e-52 208.0 196 54.6
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 6.8e-52 208.0 196 54.1
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 8.9e-52 207.6 198 54.0
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 8.9e-52 207.6 196 54.6
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 8.9e-52 207.6 196 54.6
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 8.9e-52 207.6 196 55.1
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.2e-51 207.2 196 52.6
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 1.2e-51 207.2 201 53.2
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 1.2e-51 207.2 205 52.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.5e-51 206.8 196 53.1
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 2.0e-51 206.5 196 51.0
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.0e-51 206.5 206 50.5
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 2.0e-51 206.5 197 52.8
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 2.0e-51 206.5 196 54.1
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 2.6e-51 206.1 197 53.8
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 3.4e-51 205.7 197 53.8
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 3.4e-51 205.7 198 52.0
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 9.8e-51 204.1 196 53.1
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 9.8e-51 204.1 196 52.6
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 1.3e-50 203.8 196 53.1
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 1.3e-50 203.8 197 54.3
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 4.9e-50 201.8 197 53.3
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 6.4e-50 201.4 223 48.9
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.4e-50 201.4 201 50.7
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 6.4e-50 201.4 210 51.0
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 8.3e-50 201.1 193 51.8
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 8.3e-50 201.1 197 52.8
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 4.1e-49 198.7 197 51.8
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 4.1e-49 198.7 199 53.3
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 9.2e-49 197.6 201 50.7
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 3.5e-48 195.7 200 50.5
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 3.5e-48 195.7 197 52.3
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 6.0e-48 194.9 179 54.7
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 1.0e-47 194.1 237 45.1
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.3e-47 193.7 193 51.8
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 3.3e-46 189.1 197 47.2
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 4.3e-46 188.7 197 50.8
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 9.5e-46 187.6 195 52.8
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.1e-44 184.1 198 49.5
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.2e-43 180.6 191 48.7
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 1.5e-43 180.3 165 57.6
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.7e-42 176.8 197 47.2
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.9e-42 176.0 194 48.5
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 2.9e-42 176.0 170 51.2
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 8.3e-42 174.5 164 57.3
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.4e-41 172.9 193 50.8
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.1e-41 172.2 209 49.3
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 5.4e-41 171.8 201 47.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 3.9e-39 165.6 206 44.2
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-38 163.7 205 46.3
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 5.2e-36 155.2 212 42.9
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 4.4e-35 152.1 197 45.2
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.7e-34 150.2 208 42.8
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 4.9e-34 148.7 197 42.1
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.2e-32 144.1 205 40.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.6e-32 143.7 164 49.4
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.0e-32 141.7 199 44.2
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.7e-31 140.2 199 43.7
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 1.7e-31 140.2 137 51.1
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 2.3e-31 139.8 149 51.7
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 3.9e-31 139.0 201 41.3
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 6.6e-31 138.3 204 38.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-30 137.1 128 57.8
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 4.3e-30 135.6 203 36.9
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 3.6e-29 132.5 205 39.0
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.1e-28 131.0 208 38.5
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.4e-28 130.6 200 38.0
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.8e-28 130.2 200 38.0
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 3.1e-28 129.4 172 43.6
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 1.3e-26 124.0 98 55.1
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 2.9e-26 122.9 200 41.0
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 6.4e-26 121.7 129 50.4
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 3.2e-25 119.4 229 34.1
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.2e-25 119.4 210 40.5
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 4.2e-25 119.0 199 40.2
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-24 117.5 222 32.9
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.2e-24 117.5 94 59.6
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.1e-24 116.7 181 40.3
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 1.7e-23 113.6 191 36.1
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 7.3e-22 108.2 191 35.6
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 2.1e-21 106.7 208 33.7
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-20 104.0 106 51.9
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 4.0e-20 102.4 196 35.2
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 2.6e-19 99.8 101 50.5
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.8e-19 98.6 73 60.3
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.3e-18 97.4 92 53.3
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.9e-17 93.6 102 51.0
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 5.1e-15 85.5 75 56.0
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 1.9e-14 83.6 63 63.5
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.5e-14 83.2 66 60.6
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 7.3e-14 81.6 93 38.7
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-12 77.4 67 53.7
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 2.0e-11 73.6 72 58.3
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 4.9e-10 68.9 171 31.0
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 2.4e-09 66.6 66 48.5
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 7.9e-08 61.6 42 66.7
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 1.3e-07 60.8 78 44.9


User provided reference genes

Program Settings