Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 5.8e-277 957.2 584 100.0
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 6.8e-52 209.5 639 32.9
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.3e-50 205.3 668 38.6
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.7e-50 203.8 586 42.5
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.0e-48 198.0 174 63.2
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 1.3e-47 195.3 177 60.5
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 3.0e-47 194.1 163 66.3
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 5.0e-47 193.4 164 63.4
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.6e-47 193.0 585 33.8
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 1.5e-46 191.8 171 62.6
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 1.6e-45 188.3 175 65.1
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 2.1e-45 188.0 662 31.0
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 2.8e-45 187.6 164 62.2
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 2.8e-45 187.6 691 30.7
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.7e-45 186.8 691 31.5
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 5.2e-44 183.3 163 60.7
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 6.8e-44 183.0 164 60.4
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 8.9e-44 182.6 653 31.7
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 7.5e-43 179.5 174 62.1
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 9.8e-43 179.1 568 31.9
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.3e-42 178.7 168 64.3
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.3e-42 178.7 600 31.5
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 4.9e-42 176.8 609 30.2
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.9e-42 176.8 674 30.1
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 4.9e-42 176.8 674 30.1
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 8.3e-42 176.0 178 57.3
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 1.1e-41 175.6 175 61.7
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 1.9e-41 174.9 583 29.3
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 4.1e-41 173.7 179 60.9
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 5.4e-41 173.3 181 62.4
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 5.4e-41 173.3 620 31.0
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 7.0e-41 172.9 175 58.3
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 7.0e-41 172.9 655 30.8
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 9.2e-41 172.6 621 33.3
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 3.5e-40 170.6 199 50.8
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 4.6e-40 170.2 444 31.1
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 6.0e-40 169.9 176 57.4
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 3.0e-39 167.5 601 29.8
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 3.0e-39 167.5 178 55.6
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 3.0e-39 167.5 170 57.6
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 3.9e-39 167.2 434 33.4
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 3.9e-39 167.2 166 57.8
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 3.9e-39 167.2 647 29.7
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 5.0e-39 166.8 717 29.7
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 1.1e-38 165.6 177 58.2
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 5.6e-38 163.3 164 60.4
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 5.6e-38 163.3 503 32.2
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 2.1e-37 161.4 168 55.4
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 4.7e-37 160.2 698 27.9
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 4.7e-37 160.2 162 59.3
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 4.0e-36 157.1 453 33.8
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 1.2e-35 155.6 492 31.3
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 1.5e-35 155.2 168 56.5
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.4e-35 154.1 184 55.4
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 3.4e-35 154.1 615 31.1
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 3.4e-35 154.1 596 29.9
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 7.5e-35 152.9 486 30.5
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 7.5e-35 152.9 169 49.7
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 9.8e-35 152.5 167 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.2e-34 151.4 182 50.0
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.2e-34 151.4 173 57.8
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 1.4e-33 148.7 129 66.7
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 3.2e-33 147.5 442 31.7
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.2e-33 147.5 168 56.5
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.2e-32 145.6 167 53.3
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 2.7e-32 144.4 170 55.9
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 4.6e-32 143.7 434 31.8
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 1.0e-31 142.5 169 49.1
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.7e-31 141.7 741 26.3
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 5.1e-31 140.2 616 29.4
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.1e-30 139.0 691 36.2
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 1.9e-30 138.3 628 28.8
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.9e-30 138.3 150 54.7
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 1.9e-30 138.3 645 28.5
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 5.6e-30 136.7 623 28.1
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 5.6e-30 136.7 625 28.5
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 7.3e-30 136.3 178 51.7
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 1.2e-29 135.6 174 48.9
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 3.6e-29 134.0 714 28.3
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 6.2e-29 133.3 611 30.8
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 8.1e-29 132.9 165 46.7
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 3.1e-28 131.0 628 28.0
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 3.1e-28 131.0 144 52.8
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 8.9e-28 129.4 590 28.0
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 8.9e-28 129.4 173 51.4
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 8.9e-28 129.4 599 29.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 1.2e-27 129.0 101 68.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 1.5e-27 128.6 166 52.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 1.5e-27 128.6 596 29.0
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 9.9e-27 125.9 161 52.2
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 1.3e-26 125.6 140 52.9
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 1.3e-26 125.6 165 50.3
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 1.7e-26 125.2 645 27.1
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 1.7e-26 125.2 640 30.0
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-26 124.8 170 47.6
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 2.2e-26 124.8 165 49.1
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 1.1e-25 122.5 603 29.4
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 2.4e-25 121.3 678 28.3
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 2.4e-25 121.3 168 48.2
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.1e-25 120.6 633 30.0
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 5.4e-25 120.2 633 30.0
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 7.1e-25 119.8 600 29.3
Sabra10G0107300 Salix brachista HOM05D005042 ORTHO05D006080 1.2e-24 119.0 633 29.5
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.6e-24 118.6 582 28.0
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 1.6e-24 118.6 158 50.6
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 2.1e-24 118.2 184 46.2
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.1e-24 118.2 173 48.0
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 2.1e-24 118.2 510 30.0
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 2.7e-24 117.9 158 51.3
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 7.8e-24 116.3 173 47.4
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 1.7e-23 115.2 571 29.2
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 3.9e-23 114.0 169 52.1
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 1.9e-22 111.7 173 46.8
Nn3g17525 Nelumbo nucifera HOM05D005042 ORTHO05D006080 1.9e-22 111.7 110 59.1
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.5e-22 111.3 173 46.8
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 5.6e-22 110.2 653 25.9
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 9.6e-22 109.4 153 48.4
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 1.2e-21 109.0 130 56.2
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 1.6e-21 108.6 181 43.1
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 1.6e-21 108.6 101 59.4
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 1.6e-21 108.6 156 43.6
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 8.1e-21 106.3 168 39.3
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 1.8e-20 105.1 475 29.3
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 4.0e-20 104.0 629 26.6
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 8.9e-20 102.8 157 42.7
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 2.0e-19 101.7 91 61.5
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 4.4e-19 100.5 180 43.3
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 9.9e-19 99.4 88 60.2
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 2.2e-18 98.2 104 51.0
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 2.2e-18 98.2 88 59.1
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 3.8e-18 97.4 164 44.5
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 3.8e-18 97.4 164 44.5
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 6.4e-18 96.7 525 27.4
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 6.4e-18 96.7 64 75.0
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 2.7e-16 91.3 164 43.3
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 2.7e-16 91.3 164 43.3
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 4.6e-16 90.5 616 26.5
TAR371G1032 Trochodendron aralioides HOM05D005042 ORTHO05D006080 6.0e-16 90.1 276 31.9
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.7e-15 88.6 600 26.8
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 6.6e-15 86.7 583 24.9
Manes.14G088800 Manihot esculenta HOM05D005042 ORTHO05D006080 8.1e-13 79.7 493 24.5
Sed0017498 Sechium edule HOM05D005042 ORTHO05D006080 1.4e-12 79.0 139 40.3
VMungo0771G0001 Vigna mungo HOM05D005042 ORTHO05D006080 7.4e-06 56.6 55 54.5


User provided reference genes

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