Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G265 Amborella trichopoda HOM05D001647 ORTHO05D017173 5.5e-78 294.3 154 100.0
Aqoxy6G01582 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 6.6e-23 111.3 148 53.4
Aqoxy6G01579 Aquilegia oxysepala HOM05D001647 ORTHO05D001191 8.7e-23 110.9 148 53.4
CSS0009907 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 1.4e-20 103.6 154 51.3
Dinv22746 Davidia involucrata HOM05D001647 ORTHO05D001191 2.4e-20 102.8 154 50.6
CSS0045042 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 3.1e-20 102.4 154 50.6
MBI08_g20601_MAGBIO Magnolia biondii HOM05D001647 ORTHO05D001191 9.0e-20 100.9 116 56.0
Atru.chr4.2956 Acer truncatum HOM05D001647 ORTHO05D001191 1.2e-19 100.5 132 50.8
ClCG10G015540 Citrullus lanatus HOM05D001647 ORTHO05D001191 2.6e-19 99.4 154 48.7
Lj3A10G10 Lonicera japonica HOM05D001647 ORTHO05D001191 3.4e-19 99.0 105 60.0
Duzib212G0802 Durio zibethinus HOM05D001647 ORTHO05D001191 4.4e-19 98.6 154 46.8
CSS0014342 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 9.9e-19 97.4 108 59.3
QL01p055435 Quercus lobata HOM05D001647 ORTHO05D017173 1.3e-18 97.1 102 58.8
QL10p050116 Quercus lobata HOM05D001647 ORTHO05D001191 1.3e-18 97.1 102 58.8
Nn1g09609 Nelumbo nucifera HOM05D001647 ORTHO05D001191 2.9e-18 95.9 107 55.1
Thecc.04G177300 Theobroma cacao HOM05D001647 ORTHO05D001191 3.8e-18 95.5 135 50.4
Ca_20792_v3 Cicer arietinum L. HOM05D001647 ORTHO05D001191 1.9e-17 93.2 123 52.0
Phvul.011G053900 Phaseolus vulgaris HOM05D001647 ORTHO05D001191 1.9e-17 93.2 106 54.7
Potri.007G129600 Populus trichocarpa HOM05D001647 ORTHO05D001191 3.2e-17 92.4 88 61.4
Lj3g0005963 Lotus japonicus HOM05D001647 ORTHO05D001191 4.2e-17 92.0 92 62.0
VMungo1127G2188 Vigna mungo HOM05D001647 ORTHO05D001191 1.2e-16 90.5 107 53.3
CiPaw.02G054100 Carya illinoinensis HOM05D001647 ORTHO05D001191 1.6e-16 90.1 87 60.9
Rhsim02G0081300 Rhododendron simsii HOM05D001647 ORTHO05D001191 1.6e-16 90.1 81 61.7
MD04G1042300 Malus domestica HOM05D001647 ORTHO05D001191 2.1e-16 89.7 88 59.1
Prupe.1G196500 Prunus persica HOM05D001647 ORTHO05D001191 6.0e-16 88.2 88 59.1
Sabra07G0105500 Salix brachista HOM05D001647 ORTHO05D001191 6.0e-16 88.2 88 58.0
Ciclev10020228m.g Citrus clementina HOM05D001647 ORTHO05D001191 7.9e-16 87.8 123 48.8
Manes.04G043600 Manihot esculenta HOM05D001647 ORTHO05D001191 1.3e-15 87.0 142 47.9
Lj6C11T4 Lonicera japonica HOM05D001647 ORTHO05D017173 1.7e-15 86.7 122 54.9
Psat7g209920 Pisum sativum HOM05D001647 ORTHO05D001191 1.7e-15 86.7 88 56.8
AUR62023863 Chenopodium quinoa HOM05D001647 ORTHO05D001191 3.9e-15 85.5 82 59.8
Ah.07g202130 Amaranthus hybridus HOM05D001647 ORTHO05D001191 5.1e-15 85.1 81 61.7
CARHR121430 Cardamine hirsuta HOM05D001647 ORTHO05D001191 5.1e-15 85.1 131 48.9
Gorai.006G229000 Gossypium raimondii HOM05D001647 ORTHO05D001191 5.1e-15 85.1 130 47.7
RcHm_v2.0_Chr4g0406531 Rosa chinensis HOM05D001647 ORTHO05D001191 5.1e-15 85.1 87 58.6
TWI15G0581 Tripterygium wilfordii HOM05D001647 ORTHO05D001191 5.1e-15 85.1 147 44.9
MELO3C009824.2 Cucumis melo HOM05D001647 ORTHO05D001191 6.6e-15 84.7 154 43.5
Hund03168 Selenicereus undatus HOM05D001647 ORTHO05D017173 8.7e-15 84.3 85 57.6
AL4G21530 Arabidopsis lyrata HOM05D001647 ORTHO05D001191 1.1e-14 84.0 132 47.7
Lalb_Chr03g0026081 Lupinus albus HOM05D001647 ORTHO05D001191 1.1e-14 84.0 155 44.5
A03p26360 Brassica napus HOM05D001647 ORTHO05D001191 1.5e-14 83.6 81 59.3
Gohir.A09G211500 Gossypium hirsutum HOM05D001647 ORTHO05D001191 1.5e-14 83.6 130 46.9
Gohir.D09G205000 Gossypium hirsutum HOM05D001647 ORTHO05D001191 1.5e-14 83.6 130 46.9
Aa31LG5G7750 Aethionema arabicum HOM05D001528 ORTHO05D002760 1.9e-14 83.2 146 47.3
BcaC01g04968 Brassica carinata HOM05D001647 ORTHO05D001191 2.5e-14 82.8 132 45.5
BolC3t15505H Brassica oleracea HOM05D001647 ORTHO05D001191 2.5e-14 82.8 132 45.5
Sp4g11300 Schrenkiella parvula HOM05D001647 ORTHO05D001191 3.3e-14 82.4 81 59.3
THA.LOC104815857 Tarenaya hassleriana HOM05D001647 ORTHO05D001191 3.3e-14 82.4 146 43.8
COL.COLO4_16174 Corchorus olitorius HOM05D001647 ORTHO05D001191 4.3e-14 82.0 154 44.8
C03p31620 Brassica napus HOM05D001647 ORTHO05D001191 5.6e-14 81.6 132 45.5
C04p22880 Brassica napus HOM05D001647 ORTHO05D001191 5.6e-14 81.6 127 45.7
AUR62002323 Chenopodium quinoa HOM05D001647 ORTHO05D001191 5.6e-14 81.6 82 57.3
DCAR_009853 Daucus carota HOM05D001647 ORTHO05D001191 5.6e-14 81.6 88 55.7
SGA_v2.0_scaffold221G42702 Striga asiatica HOM05D001647 ORTHO05D001191 5.6e-14 81.6 78 64.1
Cc04_g16720 Coffea canephora HOM05D001647 ORTHO05D001191 7.3e-14 81.3 112 51.8
ECA248G3160 Erigeron canadensis HOM05D001647 ORTHO05D001191 7.3e-14 81.3 123 49.6
AT2G28480 Arabidopsis thaliana HOM05D001647 ORTHO05D001191 1.3e-13 80.5 80 60.0
CsaV3_3G040890 Cucumis sativus L. HOM05D001647 ORTHO05D001191 1.3e-13 80.5 153 45.8
Medtr4g067300 Medicago truncatula HOM05D001647 ORTHO05D001191 1.3e-13 80.5 87 55.2
Cfa015176 Carpinus fangiana HOM05D001647 ORTHO05D001191 1.6e-13 80.1 102 52.9
Lsat_1_v5_gn_1_77501 Lactuca sativa HOM05D001647 ORTHO05D001191 1.6e-13 80.1 141 47.5
BcaB01g03105 Brassica carinata HOM05D001647 ORTHO05D001191 2.1e-13 79.7 134 44.0
CSS0046209 Camellia sinensis var. sinensis HOM05D001647 ORTHO05D017173 2.8e-13 79.3 70 70.0
Sc19g0002950 Simmondsia chinensis HOM05D001647 ORTHO05D001191 2.8e-13 79.3 117 50.4
EL10Ac3g05979 Beta vulgaris HOM05D001647 ORTHO05D001191 3.6e-13 79.0 124 50.8
Thhalv10016829m.g Eutrema salsugineum HOM05D001647 ORTHO05D001191 3.6e-13 79.0 81 56.8
Cpa.g.sc9.296 Carica papaya HOM05D001647 ORTHO05D001191 8.1e-13 77.8 103 49.5
Carub.0004s0942 Capsella rubella HOM05D001647 ORTHO05D001191 1.1e-12 77.4 81 58.0
MSTRG.27406 Avicennia marina HOM05D001647 ORTHO05D001191 1.4e-12 77.0 148 43.2
Glyma.12G051900 Glycine max HOM05D001647 ORTHO05D001191 1.4e-12 77.0 93 50.5
Peaxi162Scf00141g00924 Petunia axillaris HOM05D001647 ORTHO05D001191 2.4e-12 76.3 87 57.5
FvH4_4g10890 Fragaria vesca HOM05D001647 ORTHO05D001191 6.9e-12 74.7 107 47.7
FAN07G0844 Fragaria x ananassa HOM05D001647 ORTHO05D001191 9.0e-12 74.3 133 42.1
FAN17G2196 Fragaria x ananassa HOM05D001647 ORTHO05D001191 9.0e-12 74.3 107 46.7
BolC4t23784H Brassica oleracea HOM05D001647 ORTHO05D001191 2.0e-11 73.2 127 43.3
unitig_37.g12021 Utricularia gibba HOM05D001647 ORTHO05D001191 2.6e-11 72.8 88 53.4
FAN12G2494 Fragaria x ananassa HOM05D001647 ORTHO05D001191 3.4e-11 72.4 107 45.8
Sed0028231 Sechium edule HOM05D001647 ORTHO05D001191 4.5e-11 72.0 130 46.2
Cc03_g11950 Coffea canephora HOM05D001647 ORTHO05D001191 5.8e-11 71.6 112 48.2
Migut.D01562 Erythranthe guttata HOM05D001647 ORTHO05D001191 5.8e-11 71.6 83 57.8
Os01g0958400 Oryza sativa ssp. japonica HOM05D001647 ORTHO05D001191 1.3e-10 70.5 147 40.1
Oeu053823.2 Olea europaea HOM05D001647 ORTHO05D001191 3.8e-10 68.9 83 54.2
HanXRQChr01g0023811 Helianthus annuus HOM05D001647 ORTHO05D001191 4.9e-10 68.6 78 55.1
SalBow3G2902 Salvia bowleyana HOM05D001647 ORTHO05D001191 1.1e-09 67.4 83 51.8
Zm00001eb140480 Zea mays HOM05D001647 ORTHO05D001191 1.9e-09 66.6 133 40.6
arahy.Tifrunner.gnm1.ann1.G4MAIF Arachis hypogaea HOM05D001647 ORTHO05D001191 2.4e-09 66.2 87 49.4
TPR.G34241 Trifolium pratense HOM05D001647 ORTHO05D001191 5.5e-09 65.1 141 41.1
Solyc09g005270.3 Solanum lycopersicum HOM05D001647 ORTHO05D001191 3.5e-08 62.4 112 44.6
PGSC0003DMG400011786 Solanum tuberosum HOM05D001647 ORTHO05D001191 4.6e-08 62.0 61 59.0
Actinidia34598 Actinidia chinensis HOM05D001647 ORTHO05D017173 6.0e-08 61.6 123 38.2
arahy.Tifrunner.gnm1.ann1.0Q1I8G Arachis hypogaea HOM05D001647 ORTHO05D001191 7.9e-08 61.2 142 41.5
Eucgr.A00093 Eucalyptus grandis HOM05D001647 ORTHO05D001191 1.0e-07 60.8 107 45.8
CDE02G4217 Ceratophyllum demersum HOM05D001647 ORTHO05D001191 5.1e-07 58.5 61 62.3
PGR083G0602 Punica granatum HOM05D001647 ORTHO05D001191 6.7e-07 58.2 154 37.0
BcaB02g10162 Brassica carinata HOM05D001647 ORTHO05D001191 3.3e-06 55.8 123 40.7
PSO732G0352 Papaver somniferum HOM05D000793 ORTHO05D001191 4.3e-06 55.5 129 39.5
Rhsim05G0023400 Rhododendron simsii HOM05D010576 ORTHO05D012109 4.3e-06 55.5 79 45.6
Sopen09g001240 Solanum pennellii HOM05D001647 ORTHO05D001191 9.6e-06 54.3 113 45.1


User provided reference genes

Program Settings