Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G203 Amborella trichopoda HOM05D004963 ORTHO05D006638 0.0e+00 3893.2 1989 100.0
TAR629G0020 Trochodendron aralioides HOM05D004963 ORTHO05D006638 0.0e+00 2145.2 1973 56.5
Nn4g22627 Nelumbo nucifera HOM05D004963 ORTHO05D006638 0.0e+00 2054.6 1880 55.9
Dinv35107 Davidia involucrata HOM05D004963 ORTHO05D006638 0.0e+00 2021.9 1978 54.0
GSVIVG01032403001 Vitis vinifera HOM05D004963 ORTHO05D006638 0.0e+00 2007.3 1974 53.5
Cfa007367 Carpinus fangiana HOM05D004963 ORTHO05D006638 0.0e+00 1985.7 1976 53.1
PSO063G6295 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1985.7 1990 53.0
PSO067G0032 Papaver somniferum HOM05D004963 ORTHO05D006638 0.0e+00 1961.8 1989 52.5
CiPaw.03G043900 Carya illinoinensis HOM05D004963 ORTHO05D006638 0.0e+00 1952.6 1986 51.7
Prupe.3G292000 Prunus persica HOM05D004963 ORTHO05D006638 0.0e+00 1951.8 2001 51.7
PGR083G0595 Punica granatum HOM05D004963 ORTHO05D006638 0.0e+00 1920.2 1978 50.9
Aqoxy5G03770 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 0.0e+00 1917.1 1986 51.3
MD17G1026700 Malus domestica HOM05D004963 ORTHO05D006638 0.0e+00 1906.0 2006 50.9
Haze_14742 Corylus avellana HOM05D004963 ORTHO05D006638 0.0e+00 1891.3 2007 50.7
CSS0016229 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 0.0e+00 1885.2 2073 49.6
Thecc.04G017500 Theobroma cacao HOM05D004963 ORTHO05D006638 0.0e+00 1884.4 1982 51.2
Manes.17G112100 Manihot esculenta HOM05D004963 ORTHO05D006638 0.0e+00 1874.8 1979 50.6
RcHm_v2.0_Chr2g0173101 Rosa chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1866.7 1977 50.4
FvH4_6g51430 Fragaria vesca HOM05D004963 ORTHO05D006638 0.0e+00 1860.1 1979 50.4
Lju41A42T102 Lonicera japonica HOM05D004963 ORTHO05D006638 0.0e+00 1854.0 1981 51.1
CANSAT64G0570 Cannabis sativa HOM05D004963 ORTHO05D006638 0.0e+00 1851.3 1971 50.4
Potri.001G345100 Populus trichocarpa HOM05D004963 ORTHO05D006638 0.0e+00 1848.2 2010 49.1
TWI56G0249 Tripterygium wilfordii HOM05D004963 ORTHO05D006638 0.0e+00 1846.2 1979 49.3
Glyma.05G003500 Glycine max HOM05D004963 ORTHO05D006638 0.0e+00 1835.1 1984 49.2
Lj2g0007459 Lotus japonicus HOM05D004963 ORTHO05D006638 0.0e+00 1834.3 2010 49.4
MELO3C026582.2 Cucumis melo HOM05D004963 ORTHO05D006638 0.0e+00 1812.0 1980 48.8
Ca_04160_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 0.0e+00 1810.0 1981 48.9
THA.LOC104805370 Tarenaya hassleriana HOM05D004963 ORTHO05D006638 0.0e+00 1797.7 1976 48.7
Phvul.004G006800 Phaseolus vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1797.3 1979 48.1
Medtr6g004840 Medicago truncatula HOM05D004963 ORTHO05D006638 0.0e+00 1796.2 1992 48.3
Rhsim10G0016800 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1795.4 2182 45.8
Psat1g054400 Pisum sativum HOM05D004963 ORTHO05D006638 0.0e+00 1787.7 2009 47.8
CsaV3_3G042810 Cucumis sativus L. HOM05D004963 ORTHO05D006638 0.0e+00 1784.6 1980 48.4
TPR.G33247 Trifolium pratense HOM05D004963 ORTHO05D006638 0.0e+00 1784.2 1985 48.2
vmacro05867 Vaccinium macrocarpon HOM05D004963 ORTHO05D006638 0.0e+00 1782.3 2167 46.2
arahy.Tifrunner.gnm1.ann1.8578L4 Arachis hypogaea HOM05D004963 ORTHO05D006638 0.0e+00 1779.6 2027 48.3
AT5G40480 Arabidopsis thaliana HOM05D004963 ORTHO05D006638 0.0e+00 1779.2 1986 47.8
MSTRG.3144 Avicennia marina HOM05D004963 ORTHO05D006638 0.0e+00 1778.1 1991 48.4
Cc07_g01650 Coffea canephora HOM05D004963 ORTHO05D006638 0.0e+00 1775.0 1974 48.3
CAN.G257.2 Capsicum annuum HOM05D004963 ORTHO05D006638 0.0e+00 1772.7 1979 47.7
Lalb_Chr06g0175731 Lupinus albus HOM05D004963 ORTHO05D006638 0.0e+00 1771.5 1981 48.2
BcaC08g44458 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1769.6 1973 47.5
PGSC0003DMG400008314 Solanum tuberosum HOM05D004963 ORTHO05D006638 0.0e+00 1768.8 1997 46.9
BolC6t37108H Brassica oleracea HOM05D004963 ORTHO05D006638 0.0e+00 1767.3 1991 47.2
Nitab4.5_0001040g0180 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1766.5 2010 47.8
BraA07t29729Z Brassica rapa HOM05D004963 ORTHO05D006638 0.0e+00 1766.1 1977 47.4
AL7G49340 Arabidopsis lyrata HOM05D004963 ORTHO05D006638 0.0e+00 1764.2 1994 47.5
Sc03g0007420 Simmondsia chinensis HOM05D004963 ORTHO05D006638 0.0e+00 1761.5 1854 50.3
C06p19070 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1761.1 1998 46.9
Carub.0007s3510 Capsella rubella HOM05D004963 ORTHO05D006638 0.0e+00 1761.1 1988 47.5
Sopen02g019920 Solanum pennellii HOM05D004963 ORTHO05D006638 0.0e+00 1761.1 1997 46.9
Sed0022939 Sechium edule HOM05D004963 ORTHO05D006638 0.0e+00 1760.3 1981 47.7
A07p20280 Brassica napus HOM05D004963 ORTHO05D006638 0.0e+00 1759.2 1998 46.9
Solyc02g070810.4 Solanum lycopersicum HOM05D004963 ORTHO05D006638 0.0e+00 1757.3 1993 46.8
Nitab4.5_0001655g0190 Nicotiana tabacum HOM05D004963 ORTHO05D006638 0.0e+00 1756.9 2006 48.0
CARHR261510 Cardamine hirsuta HOM05D004963 ORTHO05D006638 0.0e+00 1756.1 1992 46.9
Peaxi162Scf00796g00213 Petunia axillaris HOM05D004963 ORTHO05D006638 0.0e+00 1752.3 1986 47.8
Thhalv10027618m.g Eutrema salsugineum HOM05D004963 ORTHO05D006638 0.0e+00 1750.3 1977 47.2
COL.COLO4_29124 Corchorus olitorius HOM05D004963 ORTHO05D006638 0.0e+00 1743.0 1978 48.2
Sp7g01430 Schrenkiella parvula HOM05D004963 ORTHO05D006638 0.0e+00 1729.9 1985 46.2
Ah.03g137060 Amaranthus hybridus HOM05D004963 ORTHO05D006638 0.0e+00 1728.4 1976 46.8
Rhsim10G0015700 Rhododendron simsii HOM05D004963 ORTHO05D006638 0.0e+00 1725.3 1969 48.1
Sabra16G0224100 Salix brachista HOM05D004963 ORTHO05D006638 0.0e+00 1714.9 2198 45.0
VMungo0464G1605 Vigna mungo HOM05D004963 ORTHO05D006638 0.0e+00 1711.4 2278 42.4
Aa31LG9G1130 Aethionema arabicum HOM05D004963 ORTHO05D006638 0.0e+00 1706.0 2018 45.3
DCAR_001439 Daucus carota HOM05D004963 ORTHO05D006638 0.0e+00 1697.6 1986 47.6
SalBow1G1005 Salvia bowleyana HOM05D004963 ORTHO05D006638 0.0e+00 1696.4 1981 46.7
Duzib147G0997 Durio zibethinus HOM05D004963 ORTHO05D006638 0.0e+00 1673.3 1978 46.6
Gohir.A09G029300 Gossypium hirsutum HOM05D004963 ORTHO05D006638 0.0e+00 1671.4 1851 48.7
Migut.H00075 Erythranthe guttata HOM05D004963 ORTHO05D006638 0.0e+00 1660.2 1978 46.3
AUR62043498 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1657.5 1980 46.3
SGA_v2.0_scaffold18G08276 Striga asiatica HOM05D004963 ORTHO05D006638 0.0e+00 1654.8 2005 45.8
Atru.chr6.2399 Acer truncatum HOM05D004963 ORTHO05D006638 0.0e+00 1639.4 1610 54.0
EL10Ac6g14083 Beta vulgaris HOM05D004963 ORTHO05D006638 0.0e+00 1600.1 1972 44.6
AUR62028465 Chenopodium quinoa HOM05D004963 ORTHO05D006638 0.0e+00 1593.6 2016 44.8
BcaB02g07947 Brassica carinata HOM05D004963 ORTHO05D006638 0.0e+00 1579.7 1862 45.9
FAN14G4225 Fragaria x ananassa HOM05D004963 ORTHO05D006638 0.0e+00 1565.1 1977 44.8
Zm00001eb096130 Zea mays HOM05D004963 ORTHO05D006638 0.0e+00 1398.3 1849 42.1
SMO145G0002 Selaginella moellendorffii HOM05D004963 ORTHO05D006638 0.0e+00 1387.9 2003 40.3
Mapoly0043s0050 Marchantia polymorpha HOM05D004963 ORTHO05D006638 0.0e+00 1368.6 2069 39.6
Pp3c27_1470 Physcomitrium patens HOM05D004963 ORTHO05D006638 0.0e+00 1289.6 2024 38.1
Oeu046826.1 Olea europaea HOM05D004963 ORTHO05D006638 0.0e+00 1276.9 1303 51.6
Ciclev10018026m.g Citrus clementina HOM05D004963 ORTHO05D006638 0.0e+00 1271.1 1192 54.9
Eucgr.J02245 Eucalyptus grandis HOM05D004963 ORTHO05D006638 0.0e+00 1192.6 1280 49.3
CBR_g4853 Chara braunii HOM05D004963 ORTHO05D006638 0.0e+00 1094.7 2124 33.9
ClCG10G013880 Citrullus lanatus HOM05D004963 ORTHO05D006638 1.3e-288 997.7 1073 49.5
unitig_748.g6983 Utricularia gibba HOM05D004963 ORTHO05D006638 1.9e-287 993.8 1468 40.4
SEGI_19244 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 8.0e-278 961.8 991 51.3
Migut.J01521 Erythranthe guttata HOM05D004963 ORTHO05D006638 3.1e-274 949.9 1167 45.8
Gohir.D09G029000 Gossypium hirsutum HOM05D004963 ORTHO05D006638 1.9e-263 914.1 1022 48.9
CDE07G0232 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 4.2e-255 886.3 985 49.7
Gorai.006G033800 Gossypium raimondii HOM05D004963 ORTHO05D006638 1.3e-211 741.9 771 50.3
Migut.J01523 Erythranthe guttata HOM05D004963 ORTHO05D006638 5.4e-210 736.5 977 44.4
ClCG10G013870 Citrullus lanatus HOM05D004963 ORTHO05D006638 5.3e-197 693.3 907 42.8
Ciclev10014326m.g Citrus clementina HOM05D004963 ORTHO05D006638 1.1e-186 659.1 799 46.2
Cpa.g.sc108.69 Carica papaya HOM05D004963 ORTHO05D006638 7.9e-177 626.3 1141 36.0
MBI06_g10159_MAGBIO Magnolia biondii HOM05D004963 ORTHO05D006638 3.7e-142 511.1 395 62.8
unitig_748.g6984 Utricularia gibba HOM05D004963 ORTHO05D006638 3.5e-140 504.6 505 53.3
CARHR149540 Cardamine hirsuta HOM05D004963 ORTHO05D006638 4.1e-133 481.1 525 49.5
arahy.Tifrunner.gnm1.ann1.WBLX3G Arachis hypogaea HOM05D004963 ORTHO05D006638 1.9e-130 472.2 679 40.8
Os09g0565500 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 5.6e-130 470.7 662 40.5
DCAR_003836 Daucus carota HOM05D004963 ORTHO05D006638 4.7e-129 467.6 537 45.1
Hma1.2p1_0999F.1_g246170 Hydrangea macrophylla HOM05D004963 ORTHO05D006638 6.8e-128 463.8 543 50.5
Psat5g189920 Pisum sativum HOM05D004963 ORTHO05D006638 6.4e-110 404.1 296 65.2
HPP92_013426 Vanilla planifolia HOM05D004963 ORTHO05D006638 3.2e-109 401.7 874 31.0
Gohir.D09G029066 Gossypium hirsutum HOM05D004963 ORTHO05D006638 5.4e-101 374.4 475 42.7
Gorai.006G033900 Gossypium raimondii HOM05D004963 ORTHO05D006638 4.8e-97 361.3 447 43.2
Os09g0565450 Oryza sativa ssp. japonica HOM05D004963 ORTHO05D006638 9.9e-95 353.6 260 63.1
CDE07G2050 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 8.4e-94 350.5 383 48.3
Cpa.g.sc108.68 Carica papaya HOM05D004963 ORTHO05D006638 6.7e-83 314.3 219 69.4
Carub.0007s0778 Capsella rubella HOM05D004963 ORTHO05D006638 5.3e-72 278.1 335 47.8
Atru.chr6.2400 Acer truncatum HOM05D004963 ORTHO05D006638 1.1e-61 243.8 345 40.6
CDE07G1094 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 6.5e-54 218.0 319 39.5
FAN11G1562 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.2e-52 213.8 242 48.8
CBR_g4854 Chara braunii HOM05D004963 ORTHO05D006638 7.9e-52 211.1 524 29.8
CSS0027009 Camellia sinensis var. sinensis HOM05D004963 ORTHO05D006638 1.4e-51 210.3 375 36.5
SEGI_28921 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 1.4e-48 200.3 294 37.1
FvH4_3g31750 Fragaria vesca HOM05D004963 ORTHO05D006638 2.1e-44 186.4 203 49.3
FvH4_4g00580 Fragaria vesca HOM05D004963 ORTHO05D006638 4.4e-42 178.7 203 48.3
VMungo1383G2035 Vigna mungo HOM05D004963 ORTHO05D006638 7.2e-37 161.4 373 32.4
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.2e-33 149.8 165 43.6
SEGI_35499 Sequoiadendron giganteum HOM05D004963 ORTHO05D006638 2.5e-29 136.3 140 47.9
FAN09G2859 Fragaria x ananassa HOM05D004963 ORTHO05D006638 1.2e-28 134.0 229 38.4
Psat5g189840 Pisum sativum HOM05D001849 ORTHO05D004075 5.6e-21 108.6 93 55.9
Psat2g110360 Pisum sativum HOM05D002628 ORTHO05D002785 7.3e-21 108.2 283 26.9
Glyma.15G246500 Glycine max HOM05D004963 ORTHO05D006638 2.6e-18 99.8 104 48.1
C06p05790 Brassica napus HOM05D004963 ORTHO05D021908 4.4e-18 99.0 127 37.0
C06p05800 Brassica napus HOM05D004963 ORTHO05D021908 1.3e-17 97.4 124 40.3
Zm00001eb027130 Zea mays HOM05D004963 ORTHO05D006638 2.7e-15 89.7 239 30.5
Psat5g059840 Pisum sativum HOM05D000434 ORTHO05D007220 3.5e-15 89.4 196 27.6
FvH4_1g22462 Fragaria vesca HOM05D004963 ORTHO05D006638 3.0e-14 86.3 127 40.2
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.9e-14 85.9 189 28.0
Zm00001eb387740 Zea mays HOM05D004963 ORTHO05D006638 6.6e-14 85.1 84 51.2
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.1e-13 84.3 92 46.7
PGR083G1349 Punica granatum HOM05D004963 ORTHO05D006638 3.3e-13 82.8 157 34.4
Actinidia36871 Actinidia chinensis HOM05D004963 ORTHO05D006638 5.6e-13 82.0 100 45.0
Ca_06838_v3 Cicer arietinum L. HOM05D004963 ORTHO05D006638 1.6e-12 80.5 297 26.9
CDE07G0302 Ceratophyllum demersum HOM05D004963 ORTHO05D006638 2.8e-12 79.7 161 32.9
BcaC08g43235 Brassica carinata HOM05D004963 ORTHO05D021908 8.9e-11 74.7 96 39.6
Thhalv10017260m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.4e-10 72.4 74 45.9
Thhalv10017271m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 4.4e-10 72.4 74 45.9
Thhalv10017254m.g Eutrema salsugineum HOM05D015603 ORTHO05D017573 9.8e-10 71.2 74 44.6
A02p14020 Brassica napus HOM05D015603 ORTHO05D017573 4.9e-09 68.9 140 34.3
BraA02t06462Z Brassica rapa HOM05D015603 ORTHO05D017573 4.1e-08 65.9 140 33.6
Aqoxy5G03772 Aquilegia oxysepala HOM05D004963 ORTHO05D006638 2.0e-07 63.5 149 36.2
Zm00001eb119700 Zea mays HOM05D004963 ORTHO05D006638 3.5e-07 62.8 69 46.4
Psat4g170200 Pisum sativum HOM05D003662 ORTHO05D001824 4.6e-07 62.4 54 48.1
SMO144G0155 Selaginella moellendorffii HOM05D004963 ORTHO05D379285 7.8e-07 61.6 169 32.5
Psat7g026160 Pisum sativum HOM05D004963 ORTHO05D001824 1.3e-06 60.8 54 46.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 3.0e-06 59.7 113 34.5
Cpa.g.c33664.1 Carica papaya HOM05D004963 ORTHO05D006638 3.9e-06 59.3 31 77.4
Hund10088 Selenicereus undatus HOM05D004963 ORTHO05D006638 5.0e-06 58.9 96 39.6


User provided reference genes

Program Settings