Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 0.0e+00 1409.0 700 100.0
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.1e-253 878.2 722 62.9
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 4.5e-252 874.8 687 62.9
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 3.8e-251 871.7 720 60.6
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 1.6e-249 866.3 685 62.6
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 3.6e-249 865.1 719 60.6
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 3.0e-248 862.1 721 60.2
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 6.7e-248 860.9 695 60.9
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 3.3e-247 858.6 686 62.4
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 7.4e-247 857.4 693 61.8
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 1.1e-245 853.6 688 61.8
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 2.4e-245 852.4 687 60.7
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 1.6e-244 849.7 684 61.3
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 5.9e-244 847.8 685 61.3
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 2.2e-243 845.9 668 62.7
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 1.1e-242 843.6 693 60.9
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.1e-242 843.6 693 61.5
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 1.5e-242 843.2 685 61.2
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.5e-242 842.4 712 58.8
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 7.2e-242 840.9 700 60.7
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 1.6e-241 839.7 706 59.1
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 2.1e-241 839.3 685 61.6
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 1.0e-240 837.0 680 62.1
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 8.8e-240 833.9 669 61.1
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 4.4e-239 831.6 685 59.9
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 9.7e-239 830.5 694 59.4
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 2.2e-238 829.3 673 60.0
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 8.2e-238 827.4 685 59.9
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 8.2e-238 827.4 688 60.8
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 3.1e-237 825.5 673 60.5
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 4.1e-237 825.1 712 58.4
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 5.3e-237 824.7 750 55.6
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 5.3e-237 824.7 688 60.3
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 5.3e-237 824.7 689 60.2
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 1.6e-236 823.2 684 60.2
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 7.7e-236 820.8 697 59.1
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 3.8e-235 818.5 706 58.4
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 1.5e-234 816.6 682 58.5
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 1.5e-234 816.6 672 59.8
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 4.2e-234 815.1 684 59.9
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 4.2e-234 815.1 690 59.7
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 4.7e-233 811.6 710 56.3
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 8.0e-233 810.8 700 59.1
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 3.0e-232 808.9 706 57.4
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 7.5e-231 804.3 691 59.3
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 2.2e-230 802.7 669 59.0
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 4.8e-230 801.6 688 58.1
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 6.3e-230 801.2 662 59.2
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.4e-229 800.0 680 58.1
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.8e-229 799.7 687 57.6
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 2.4e-229 799.3 717 57.6
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 2.4e-229 799.3 690 59.0
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 5.4e-229 798.1 688 57.7
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 5.4e-229 798.1 688 57.7
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 1.6e-228 796.6 689 58.5
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 2.7e-228 795.8 689 58.5
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 1.3e-227 793.5 675 59.9
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 1.7e-227 793.1 674 58.0
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.2e-227 792.7 682 58.4
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 2.9e-227 792.3 669 58.3
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 3.8e-227 792.0 669 58.3
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 3.8e-227 792.0 680 57.4
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.0e-227 791.6 688 57.3
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 5.0e-227 791.6 684 59.1
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 3.2e-226 788.9 712 55.8
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 4.2e-226 788.5 680 57.4
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 4.2e-226 788.5 680 57.4
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 1.6e-225 786.6 686 56.1
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 4.7e-225 785.0 711 56.4
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 4.7e-225 785.0 721 56.3
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 6.1e-225 784.6 721 56.3
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 1.4e-224 783.5 675 57.6
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 4.4e-223 778.5 683 58.7
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.1e-221 773.9 622 61.1
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 3.1e-221 772.3 717 55.4
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 5.2e-216 755.0 658 58.5
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 9.8e-215 750.7 716 54.9
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 3.7e-214 748.8 727 54.1
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.4e-213 746.1 682 55.4
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 1.1e-210 737.3 721 54.1
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 2.8e-209 732.6 711 53.6
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 1.4e-205 720.3 624 58.5
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 8.1e-201 704.5 684 53.7
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 1.1e-197 694.1 982 40.8
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 9.2e-197 691.0 710 52.1
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 6.0e-196 688.3 495 68.7
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 1.1e-194 684.1 539 62.3
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 1.1e-192 677.6 682 51.9
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 4.4e-191 672.2 639 54.9
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 4.1e-189 665.6 665 53.5
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 6.0e-188 661.8 500 64.6
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 1.0e-179 634.4 582 55.5
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 6.4e-174 615.1 684 49.4
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 1.7e-171 607.1 520 57.7
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 2.0e-167 593.6 677 46.8
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 6.7e-163 578.6 586 51.5
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 4.3e-162 575.9 643 46.7
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 2.4e-160 570.1 682 46.3
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 7.9e-156 555.1 430 62.8
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 3.2e-141 506.5 354 67.8
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 9.4e-141 505.0 414 58.7
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.4e-135 486.5 394 62.7
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 2.7e-124 450.3 525 45.0
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 4.8e-113 412.9 310 64.2
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 4.2e-109 399.8 351 57.5
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 5.2e-107 392.9 442 47.1
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 1.8e-104 384.4 277 65.3
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 2.2e-97 360.9 391 49.1
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 2.0e-90 337.8 314 55.1
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 7.0e-88 329.3 296 57.8
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 5.0e-86 323.2 333 51.4
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 6.6e-86 322.8 282 54.6
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 6.8e-83 312.8 753 30.8
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 6.2e-76 289.7 241 57.3
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.2e-74 285.4 233 60.1
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 3.5e-71 273.9 379 38.8
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.9e-70 270.4 290 50.3
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 5.4e-56 223.4 580 31.0
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 1.6e-55 221.9 417 34.8
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 2.3e-46 191.4 547 27.4
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 1.2e-39 169.1 334 35.9
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.0e-38 164.5 137 58.4
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 2.5e-37 161.4 111 70.3
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.8e-36 157.1 215 43.3
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.9e-35 153.3 226 40.7
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.0e-33 147.1 219 41.1
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 5.1e-30 137.1 111 64.0
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 6.3e-28 130.2 97 62.9
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 1.8e-27 128.6 277 32.5
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 1.0e-22 112.8 74 70.3
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 2.0e-21 108.6 125 45.6
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 2.5e-16 91.7 94 47.9
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 3.9e-14 84.3 64 60.9
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.5e-13 82.4 97 43.3
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 5.7e-13 80.5 46 71.7
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.4e-13 80.1 65 56.9
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 9.7e-13 79.7 58 63.8
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 1.1e-11 76.3 145 39.3
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.4e-11 75.1 62 58.1
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 2.4e-11 75.1 46 67.4
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 2.6e-10 71.6 68 48.5


User provided reference genes

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