Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G183 Amborella trichopoda HOM05D003551 ORTHO05D004869 2.6e-245 851.7 448 100.0
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 2.0e-176 622.9 439 73.6
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 1.7e-175 619.8 440 73.2
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.2e-173 613.6 441 71.0
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 7.8e-173 610.9 441 70.7
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.5e-171 605.9 447 71.4
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 5.6e-171 604.7 438 71.9
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 5.6e-171 604.7 441 70.3
Cpa.g.sc33.80 Carica papaya HOM05D003551 ORTHO05D004869 7.3e-171 604.4 438 69.9
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 9.5e-171 604.0 439 69.0
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 1.6e-170 603.2 438 71.7
Nitab4.5_0004725g0020 Nicotiana tabacum HOM05D003551 ORTHO05D004869 3.6e-170 602.1 439 68.8
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 3.6e-170 602.1 437 69.3
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 6.1e-170 601.3 435 70.6
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 1.2e-168 597.0 439 69.2
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 2.0e-168 596.3 437 69.8
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 2.0e-168 596.3 453 68.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 4.4e-168 595.1 467 68.5
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.7e-167 592.0 437 70.0
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 6.4e-167 591.3 462 67.5
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 4.1e-166 588.6 435 69.0
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 5.4e-166 588.2 435 68.7
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 5.4e-166 588.2 439 69.5
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 2.0e-165 586.3 439 68.3
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 5.0e-164 581.6 437 68.9
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 1.9e-163 579.7 438 68.5
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 9.5e-163 577.4 445 67.2
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 3.6e-162 575.5 437 68.6
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 8.0e-162 574.3 428 68.9
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 1.4e-161 573.5 442 68.1
Duzib268G0822 Durio zibethinus HOM05D003551 ORTHO05D004869 6.8e-161 571.2 439 67.4
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.2e-160 570.5 428 68.9
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 2.0e-160 569.7 428 68.9
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 2.6e-160 569.3 449 66.1
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 2.6e-160 569.3 439 68.1
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 4.4e-160 568.5 444 65.3
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 4.9e-159 565.1 438 66.7
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 4.9e-159 565.1 439 67.2
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 1.2e-157 560.5 444 64.6
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 2.7e-157 559.3 439 67.4
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 6.0e-157 558.1 440 68.0
Thecc.02G267000 Theobroma cacao HOM05D003551 ORTHO05D004869 1.3e-156 557.0 448 67.0
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 2.3e-156 556.2 414 69.6
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.1e-156 555.1 428 68.0
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 8.6e-156 554.3 449 65.3
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 8.6e-156 554.3 439 65.4
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 2.5e-155 552.7 447 65.3
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 2.5e-155 552.7 439 65.1
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 5.6e-155 551.6 467 63.0
TWI75G1217 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 2.1e-154 549.7 435 65.3
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 4.7e-154 548.5 445 65.2
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 8.1e-154 547.7 439 66.1
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 1.1e-153 547.4 437 65.4
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.8e-153 546.6 438 65.3
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 4.0e-153 545.4 439 64.5
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 2.6e-152 542.7 437 64.8
Haze_12293 Corylus avellana HOM05D003551 ORTHO05D004869 4.4e-152 542.0 437 65.9
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 9.9e-152 540.8 440 64.8
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 9.9e-152 540.8 446 64.1
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 9.9e-152 540.8 438 63.9
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.6e-149 533.5 442 63.6
FvH4_4g25230 Fragaria vesca HOM05D003551 ORTHO05D004869 3.5e-149 532.3 442 63.6
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 3.5e-149 532.3 442 63.6
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 4.6e-149 531.9 439 64.5
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 5.1e-148 528.5 438 63.5
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 8.6e-148 527.7 442 62.9
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 1.5e-147 526.9 416 65.9
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 2.5e-147 526.2 446 63.9
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.2e-146 523.9 440 63.0
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 6.8e-145 518.1 444 61.9
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 6.8e-145 518.1 440 63.4
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 1.5e-144 516.9 442 61.8
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 2.6e-144 516.2 444 61.7
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 9.9e-144 514.2 434 63.4
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.3e-143 513.8 445 62.2
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-143 513.1 444 61.5
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 3.8e-143 512.3 427 62.1
Lj6C816T3 Lonicera japonica HOM05D003551 ORTHO05D004869 6.0e-141 505.0 437 63.2
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.1e-140 501.9 429 62.5
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 1.1e-139 500.7 440 60.0
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 1.1e-139 500.7 439 61.3
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 1.5e-139 500.4 449 60.8
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 3.3e-139 499.2 439 62.2
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 4.3e-139 498.8 427 63.0
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 2.4e-137 493.0 440 59.5
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 5.3e-137 491.9 437 60.4
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 5.4e-134 481.9 493 55.0
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 9.3e-134 481.1 443 57.8
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 3.0e-132 476.1 480 55.0
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 7.6e-128 461.5 416 60.1
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 2.1e-125 453.4 477 53.9
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 8.7e-124 448.0 444 55.2
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 1.9e-123 446.8 437 59.5
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 2.5e-123 446.4 444 55.0
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 2.5e-123 446.4 444 55.0
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 7.4e-123 444.9 445 55.5
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 9.6e-123 444.5 442 55.0
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 9.6e-123 444.5 444 55.0
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 2.1e-122 443.4 436 52.5
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 4.8e-122 442.2 442 54.8
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 5.3e-121 438.7 343 66.5
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.6e-117 427.2 416 56.2
Actinidia01370 Actinidia chinensis HOM05D003551 ORTHO05D004869 6.0e-117 425.2 436 57.6
Mapoly0084s0017 Marchantia polymorpha HOM05D003551 ORTHO05D004869 2.3e-116 423.3 434 51.6
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 5.1e-116 422.2 280 75.4
AagrBONN_evm.TU.Sc2ySwM_344.4679 Anthoceros agrestis HOM05D003551 ORTHO05D004869 1.6e-114 417.2 345 61.7
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 1.2e-112 411.0 445 51.7
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.5e-112 410.6 442 52.7
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 2.6e-112 409.8 485 47.4
TAR374G0468 Trochodendron aralioides HOM05D003551 ORTHO05D004869 2.6e-112 409.8 309 68.0
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 1.4e-110 404.1 445 51.9
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 5.1e-108 395.6 439 51.3
Atru.chr11.1974 Acer truncatum HOM05D003551 ORTHO05D004869 1.3e-106 391.0 347 60.5
SMO197G0095 Selaginella moellendorffii HOM05D003551 ORTHO05D004869 3.2e-102 376.3 404 50.0
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 7.2e-102 375.2 447 48.1
QL04p087069 Quercus lobata HOM05D003551 ORTHO05D004869 1.5e-99 367.5 240 75.0
CBR_g23824 Chara braunii HOM05D003551 ORTHO05D004869 1.7e-98 364.0 426 48.6
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 9.1e-97 358.2 311 57.6
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 5.7e-91 339.0 441 48.1
SHI17843 Sapria himalayana HOM05D003551 ORTHO05D000023 2.0e-88 330.5 456 42.5
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 5.0e-87 325.9 387 48.1
FAN07G2018 Fragaria x ananassa HOM05D003551 ORTHO05D004869 6.7e-84 315.5 276 60.9
PRCOL_00005223 Prasinoderma coloniale HOM05D003551 ORTHO05D004869 2.4e-81 307.0 426 41.8
Medtr4g005970 Medicago truncatula HOM05D003551 ORTHO05D004869 2.2e-79 300.4 443 44.9
AUR62015661 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.2e-77 294.7 428 44.9
Medtr4g006000 Medicago truncatula HOM05D003551 ORTHO05D004869 4.0e-76 289.7 438 42.2
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 8.3e-74 282.0 255 59.2
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 5.3e-73 279.3 192 73.4
MCO05G293 Micromonas commoda HOM05D003551 ORTHO05D004869 1.7e-71 274.2 424 40.6
TPR.G18550 Trifolium pratense HOM05D003551 ORTHO05D004869 5.0e-71 272.7 437 38.4
Cre06.g277050 Chlamydomonas reinhardtii HOM05D003551 ORTHO05D004869 9.4e-70 268.5 426 37.1
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 4.0e-60 236.5 144 81.2
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.0e-48 197.6 162 63.6
Cfa023305 Carpinus fangiana HOM05D003551 ORTHO05D004869 1.1e-46 191.8 423 30.3
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 5.4e-41 172.9 94 89.4
Actinidia08115 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.3e-31 141.7 94 76.6
unitig_22.g6421 Utricularia gibba HOM05D003551 ORTHO05D004869 1.6e-29 134.8 136 50.7
BcaB04g19498 Brassica carinata HOM05D003551 ORTHO05D004869 7.6e-27 125.9 133 48.1
Actinidia08116 Actinidia chinensis HOM05D003551 ORTHO05D004869 1.1e-22 112.1 124 50.0
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.4e-17 95.1 55 80.0
HPP92_006872 Vanilla planifolia HOM05D003551 ORTHO05D016818 8.7e-15 85.9 82 50.0
Migut.C01140 Erythranthe guttata HOM05D003551 ORTHO05D004869 1.1e-14 85.5 82 56.1
BcaB06g26385 Brassica carinata HOM05D003551 ORTHO05D016818 1.9e-14 84.7 117 42.7
HPP92_006854 Vanilla planifolia HOM05D003551 ORTHO05D016818 2.5e-14 84.3 77 53.2
BcaB07g33803 Brassica carinata HOM05D003551 ORTHO05D032399 7.3e-14 82.8 107 45.8
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 2.6e-11 74.3 170 37.6
Lsat_1_v5_gn_1_12340 Lactuca sativa HOM05D003551 ORTHO05D004869 6.4e-10 69.7 112 39.3
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 1.4e-09 68.6 64 62.5
HPP92_028370 Vanilla planifolia HOM05D003551 ORTHO05D016818 3.2e-09 67.4 69 47.8
HPP92_027078 Vanilla planifolia HOM05D003551 ORTHO05D004869 1.2e-08 65.5 176 30.1
HPP92_026933 Vanilla planifolia HOM05D015067 ORTHO05D427257 4.6e-08 63.5 40 77.5
Lalb_Chr05g0228661 Lupinus albus HOM05D003551 ORTHO05D048508 3.0e-07 60.8 134 38.8
HPP92_006540 Vanilla planifolia HOM05D003551 ORTHO05D016818 7.4e-06 56.2 62 45.2


User provided reference genes

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