Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 0.0e+00 1318.9 638 100.0
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.1e-225 786.9 650 61.7
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.5e-217 760.0 644 59.6
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.3e-217 758.8 647 58.1
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 3.3e-217 758.8 647 58.1
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 7.3e-217 757.7 653 57.9
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.4e-215 753.4 652 59.4
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 5.8e-214 748.0 672 57.1
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 1.1e-212 743.8 647 57.3
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 4.1e-212 741.9 647 58.4
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 3.5e-211 738.8 651 57.3
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.6e-211 738.4 649 58.4
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.7e-210 736.5 643 57.5
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 6.6e-210 734.6 649 57.3
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 6.6e-210 734.6 649 57.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 8.7e-210 734.2 651 57.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.5e-209 733.4 649 56.5
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.3e-209 732.3 651 55.8
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 2.1e-208 729.6 647 58.1
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 4.7e-208 728.4 641 56.9
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 8.1e-208 727.6 649 57.5
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.8e-207 726.5 642 57.2
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.4e-207 726.1 654 57.3
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.1e-207 725.7 648 56.5
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.2e-207 724.9 648 55.7
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 5.2e-207 724.9 647 57.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 6.9e-207 724.5 647 57.5
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 2.6e-206 722.6 647 57.0
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 3.4e-206 722.2 646 56.8
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 5.8e-206 721.5 647 56.3
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 5.8e-206 721.5 648 56.9
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 1.7e-205 719.9 651 57.0
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 3.8e-205 718.8 644 57.6
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 3.8e-205 718.8 644 57.6
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.8e-205 718.8 642 56.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.9e-205 718.4 641 56.3
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 5.4e-204 714.9 642 56.2
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 7.1e-204 714.5 647 56.4
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 9.3e-204 714.1 648 56.5
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 9.3e-204 714.1 648 57.1
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.3e-202 710.3 647 56.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.7e-202 709.9 644 55.6
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 3.0e-202 709.1 649 55.3
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 3.0e-202 709.1 646 55.7
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 3.9e-202 708.8 648 56.5
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 6.6e-202 708.0 653 56.8
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 8.7e-202 707.6 652 56.3
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.1e-201 707.2 647 55.8
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 1.1e-201 707.2 642 55.6
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.5e-201 706.8 652 55.8
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 1.9e-201 706.4 648 55.9
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 4.3e-201 705.3 644 56.8
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 5.6e-201 704.9 649 55.9
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 9.6e-201 704.1 639 56.7
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.1e-200 703.0 648 56.8
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 4.8e-200 701.8 658 55.3
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.8e-199 699.9 640 55.5
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 4.0e-199 698.7 646 55.7
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.0e-199 697.6 655 55.6
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 9.0e-199 697.6 650 55.2
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 9.0e-199 697.6 645 55.5
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 9.0e-199 697.6 643 56.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.2e-198 697.2 645 55.8
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 2.0e-198 696.4 658 54.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.3e-197 693.7 644 55.4
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 6.4e-197 691.4 658 54.6
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 6.4e-197 691.4 650 55.1
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.9e-196 689.9 654 55.0
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.2e-196 689.1 606 56.6
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 7.1e-196 688.0 651 54.2
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.1e-195 686.4 644 55.0
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.0e-194 684.1 649 55.0
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.3e-194 683.7 615 55.8
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 3.0e-194 682.6 658 53.5
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 3.3e-193 679.1 646 54.0
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 9.6e-193 677.6 649 55.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 3.7e-192 675.6 644 55.0
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 2.0e-190 669.8 651 53.5
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 5.8e-190 668.3 637 53.8
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 7.6e-190 667.9 628 55.9
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 8.4e-189 664.5 623 55.2
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 7.1e-188 661.4 583 57.3
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.6e-187 660.2 652 54.0
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.4e-183 647.1 668 53.1
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 2.4e-183 646.4 542 60.5
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.5e-182 643.7 647 51.5
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.2e-179 634.0 572 56.8
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 3.8e-173 612.5 684 50.1
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 2.3e-154 550.1 647 45.6
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.8e-146 523.9 463 58.1
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 3.1e-143 513.1 640 46.4
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 8.0e-139 498.4 487 53.0
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.3e-138 496.9 619 44.7
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.2e-134 484.6 573 46.9
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 5.9e-134 482.3 655 43.2
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.8e-130 470.7 509 49.7
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 3.1e-114 416.8 400 52.8
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 4.0e-114 416.4 253 77.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 5.2e-114 416.0 593 41.1
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 2.7e-110 403.7 474 46.0
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 4.0e-98 363.2 533 40.3
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 3.2e-95 353.6 639 36.3
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 4.6e-94 349.7 495 43.2
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.1e-87 328.6 178 84.3
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 2.2e-80 304.3 293 54.3
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 1.2e-78 298.5 479 38.8
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 8.7e-77 292.4 197 71.1
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.6e-70 271.6 425 38.1
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 6.7e-61 239.6 359 39.8
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 2.8e-51 207.6 169 62.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.2e-49 202.2 104 87.5
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 1.7e-48 198.4 106 84.0
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.6e-38 165.2 258 38.8
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.0e-37 162.5 178 49.4
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 4.8e-35 153.7 211 37.4
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 7.0e-34 149.8 200 41.0
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 1.5e-28 132.1 136 52.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 3.5e-25 120.9 487 26.7
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.2e-24 118.2 153 43.8
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 6.5e-24 116.7 67 82.1
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.5e-23 115.5 83 68.7
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 6.1e-22 110.2 58 79.3
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.4e-18 97.1 94 50.0
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.0e-16 92.8 74 60.8
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 1.2e-14 85.9 79 54.4
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 2.1e-14 85.1 79 54.4
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 2.8e-14 84.7 79 53.2
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.4e-13 82.4 79 51.9
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 1.4e-13 82.4 79 51.9
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 2.3e-13 81.6 44 77.3
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 3.0e-13 81.3 79 53.2
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 4.4e-12 77.4 124 32.3
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 1.2e-09 69.3 75 49.3
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.2e-09 69.3 75 49.3


User provided reference genes

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