Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 0.0e+00 1952.9 1009 100.0
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1145.2 987 60.6
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1123.2 1020 58.8
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1108.6 992 58.5
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1084.7 1014 56.7
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1080.1 1020 56.5
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1079.7 1011 56.7
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 1.2e-309 1066.6 987 57.5
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 5.8e-309 1064.3 1020 56.6
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 7.5e-309 1063.9 1015 55.5
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 1.7e-308 1062.8 1005 57.4
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 1.9e-307 1059.3 1013 56.3
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 1.6e-306 1056.2 1004 55.6
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 1.6e-306 1056.2 1022 57.1
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 6.6e-305 1050.8 1013 55.4
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 9.5e-304 1047.0 1020 55.8
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 6.2e-303 1044.3 1017 55.0
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 8.1e-303 1043.9 1012 55.4
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 1.1e-302 1043.5 1018 55.7
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 1.4e-302 1043.1 1015 56.3
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 3.1e-302 1042.0 1018 55.6
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 3.4e-301 1038.5 1020 53.7
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 1.7e-300 1036.2 1037 55.0
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 2.2e-300 1035.8 1016 55.5
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 1.4e-299 1033.1 1021 53.9
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.9e-299 1032.7 1015 55.0
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 7.1e-299 1030.8 1015 54.9
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 1.3e-297 1026.5 1015 54.9
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 2.5e-296 1022.3 1020 54.6
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 3.6e-295 1018.5 1063 53.3
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 2.4e-294 1015.8 1020 54.2
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 3.1e-294 1015.4 1011 54.8
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 5.8e-293 1011.1 1025 52.1
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 2.9e-292 1008.8 1023 51.6
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 1.9e-291 1006.1 1016 54.3
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 2.4e-291 1005.7 993 53.0
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 2.1e-290 1002.7 995 53.8
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 7.8e-290 1000.7 1011 53.2
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 1.3e-289 1000.0 1023 52.4
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 3.0e-289 998.8 984 54.4
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 3.9e-289 998.4 1016 52.6
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 6.6e-289 997.7 978 54.1
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 1.1e-288 996.9 991 53.4
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 4.3e-288 995.0 1014 52.6
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 7.3e-288 994.2 978 53.1
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 8.1e-287 990.7 1023 50.6
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 2.4e-286 989.2 990 52.9
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 2.0e-285 986.1 996 52.1
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 3.4e-285 985.3 1013 52.6
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 2.2e-284 982.6 1016 53.9
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 2.9e-284 982.2 988 54.3
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 6.4e-284 981.1 1024 52.8
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 1.4e-283 979.9 1019 51.7
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 1.4e-283 979.9 1012 52.2
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 7.9e-282 974.2 970 52.9
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 7.9e-282 974.2 1011 51.2
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 7.9e-282 974.2 1017 51.5
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.1e-280 970.3 1024 50.7
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 4.0e-278 961.8 1018 51.5
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 4.0e-278 961.8 982 52.7
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 4.5e-277 958.4 1025 52.1
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 1.3e-276 956.8 979 52.4
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.7e-276 956.4 1010 50.9
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 9.3e-275 950.7 1017 51.2
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 1.2e-274 950.3 1027 50.1
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.5e-274 948.7 985 51.5
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 2.3e-273 946.0 988 51.4
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 3.9e-273 945.3 897 56.3
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 8.7e-273 944.1 1001 50.0
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 1.9e-272 943.0 1034 50.2
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 3.7e-271 938.7 1011 49.9
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 5.3e-270 934.9 1012 49.6
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 9.0e-270 934.1 983 50.4
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.5e-269 933.3 924 54.1
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.0e-268 930.6 1017 49.7
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 1.1e-267 927.2 983 51.6
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 3.0e-265 919.1 1017 48.6
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.3e-264 915.6 1017 48.6
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.4e-262 910.2 1013 48.7
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 2.2e-260 902.9 1008 48.5
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 4.2e-259 898.7 998 49.3
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 4.6e-258 895.2 1029 49.6
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 1.3e-257 893.6 1028 50.7
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 1.8e-257 893.3 1037 47.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.1e-254 884.0 1041 48.8
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 3.1e-254 882.5 906 51.7
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 4.8e-247 858.6 965 49.3
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 6.9e-246 854.7 827 56.0
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 1.6e-242 843.6 993 47.3
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 7.9e-242 841.3 841 53.5
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 3.4e-224 782.7 775 55.4
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 2.1e-218 763.5 766 53.4
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 5.6e-211 738.8 1030 43.7
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.6e-197 692.6 668 56.6
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.6e-197 692.6 668 56.4
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 2.3e-172 610.5 1052 36.1
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 6.0e-165 585.9 641 52.9
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 4.0e-161 573.2 1096 34.5
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 4.3e-155 553.1 628 49.4
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 5.1e-148 529.6 587 49.6
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 2.5e-147 527.3 938 36.6
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.5e-136 491.5 552 51.8
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.6e-133 481.5 517 51.3
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 2.7e-117 427.6 352 62.5
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.8e-105 388.3 1115 27.9
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.5e-102 378.6 1132 28.2
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.5e-83 315.5 388 45.1
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.6e-80 305.4 437 39.6
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 4.4e-75 287.3 321 52.3
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.2e-61 242.7 214 59.3
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.9e-54 218.8 348 39.4
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.4e-49 202.6 261 45.2
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.9e-42 177.6 145 62.8
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.8e-39 169.1 214 43.0
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.3e-37 162.9 568 27.3
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 8.4e-34 150.2 172 50.6
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 6.7e-31 140.6 150 44.7
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 3.8e-26 124.8 223 38.1
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 8.5e-26 123.6 426 26.8
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.8e-23 115.9 134 44.0
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.0e-22 112.5 88 56.8
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.1e-20 106.7 106 53.8
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.5e-19 102.8 182 38.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.9e-18 98.6 113 39.8
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.1e-17 96.7 103 43.7
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.1e-16 92.4 208 32.7
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.0e-15 88.6 127 40.2
PRCOL_00001784 Prasinoderma coloniale HOM05D005223 ORTHO05D006449 1.1e-14 86.7 376 28.5
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.3e-14 85.1 77 49.4
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.2e-13 82.4 66 60.6
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.5e-11 76.3 224 28.1
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 2.0e-11 75.9 1004 22.1
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 5.9e-11 74.3 98 43.9
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 8.5e-10 70.5 55 56.4
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 8.5e-10 70.5 55 56.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 8.5e-10 70.5 143 35.0
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 7.2e-09 67.4 65 58.5
Os02g0600000 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 5.2e-07 61.2 48 58.3
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 6.7e-07 60.8 65 53.8
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 1.1e-06 60.1 40 62.5


User provided reference genes

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